Wall clock time and date at job start Tue Mar 31 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 120.00494 * 2 1 4 4 H 1.48502 * 109.46924 * 272.52763 * 3 2 1 5 5 H 1.48495 * 109.46874 * 32.52206 * 3 2 1 6 6 H 1.48494 * 109.47070 * 152.52736 * 3 2 1 7 7 C 1.39946 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99428 * 347.51265 * 7 2 1 9 9 C 1.41435 * 119.99922 * 167.51611 * 7 2 1 10 10 C 1.40795 * 120.17550 * 328.65412 * 9 7 2 11 11 C 1.37711 * 120.04034 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41814 * 359.74446 * 11 10 9 13 13 C 1.39896 * 120.35140 * 0.51363 * 12 11 10 14 14 C 1.47847 * 120.02644 * 179.76180 * 13 12 11 15 15 O 1.21548 * 120.00154 * 179.72655 * 14 13 12 16 16 N 1.34776 * 119.99904 * 359.45292 * 14 13 12 17 17 C 1.39310 * 120.00386 * 175.35699 * 16 14 13 18 18 C 1.38994 * 119.68669 * 185.21931 * 17 16 14 19 19 C 1.38424 * 119.15914 * 179.79490 * 18 17 16 20 20 C 1.38713 * 118.52938 * 0.46906 * 19 18 17 21 21 C 1.38417 * 119.29183 * 359.75392 * 20 19 18 22 22 F 1.35102 * 119.61150 * 180.02562 * 21 20 19 23 23 N 1.32109 * 120.78468 * 0.02562 * 21 20 19 24 24 C 1.39047 * 119.94845 * 359.48936 * 13 12 11 25 25 H 0.97005 * 119.99392 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.97602 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.78968 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.82420 * 180.27849 * 12 11 10 29 29 H 0.97006 * 120.00320 * 355.35713 * 16 14 13 30 30 H 1.08005 * 120.41654 * 0.02562 * 18 17 16 31 31 H 1.08008 * 120.73153 * 180.20049 * 19 18 17 32 32 H 1.08002 * 120.35628 * 179.76856 * 20 19 18 33 33 H 1.08006 * 120.20499 * 180.22510 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4365 2.0772 -1.3987 5 1 1.4677 2.6366 0.7527 6 1 3.5656 1.4251 0.6459 7 6 2.0080 -1.2120 0.0005 8 1 1.4870 -2.1361 0.2032 9 6 3.3973 -1.2267 -0.2642 10 6 3.9633 -0.2694 -1.1277 11 6 5.3162 -0.2865 -1.3839 12 6 6.1291 -1.2378 -0.7933 13 6 5.5838 -2.2002 0.0632 14 6 6.4582 -3.2165 0.6863 15 8 5.9848 -4.0495 1.4343 16 7 7.7795 -3.2228 0.4207 17 6 8.6186 -4.1176 1.0811 18 6 9.9927 -4.0462 0.8841 19 6 10.8166 -4.9378 1.5491 20 6 10.2353 -5.8806 2.3842 21 6 8.8591 -5.8985 2.5309 22 9 8.2861 -6.8136 3.3431 23 7 8.0990 -5.0314 1.8862 24 6 4.2196 -2.1967 0.3324 25 1 -0.4849 0.8401 -0.0004 26 1 3.3360 0.4788 -1.5893 27 1 5.7462 0.4499 -2.0466 28 1 7.1896 -1.2396 -0.9975 29 1 8.1464 -2.6043 -0.2304 30 1 10.4124 -3.3020 0.2234 31 1 11.8880 -4.9030 1.4172 32 1 10.8500 -6.5929 2.9145 33 1 3.7948 -2.9356 0.9958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160750326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:05 Heat of formation + Delta-G solvation = -4.540146 kcal Electronic energy + Delta-G solvation = -20840.518434 eV Core-core repulsion = 17360.213817 eV Total energy + Delta-G solvation = -3480.304617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.00727 -40.78819 -39.05413 -37.38849 -34.80223 -33.73380 -32.68957 -31.04741 -30.21984 -29.52619 -25.44325 -24.49001 -23.68700 -22.56717 -20.79971 -20.26868 -18.81253 -17.84626 -17.03503 -16.47656 -16.31299 -16.16217 -15.82673 -15.52848 -14.85641 -14.75282 -14.08598 -13.88220 -13.62877 -13.26214 -13.17468 -12.86784 -12.82220 -12.55775 -12.12771 -11.73470 -11.16581 -10.88378 -10.73731 -10.61527 -10.20722 -9.98140 -9.96825 -9.78530 -9.36053 -9.02811 -8.39995 -7.96876 -7.84737 -7.03156 -4.62910 0.76328 1.01875 1.82003 2.42747 2.76907 3.00241 3.13653 3.19658 3.31668 3.64308 3.72928 3.87903 4.34822 4.42546 4.64211 4.81525 4.91706 5.20334 5.26483 5.46767 5.57380 5.74499 5.84445 5.89150 6.15349 6.25221 6.52476 6.55943 6.66683 6.87766 7.02086 7.18962 7.30508 7.37698 7.66588 7.77448 7.90415 8.22024 8.43532 8.48547 8.64528 9.98990 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.032340 B = 0.003652 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.597975 B = 7664.246116 C = 8300.883623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.080 3.920 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.439 4.439 8 H 0.095 0.905 9 C 0.082 3.918 10 C -0.220 4.220 11 C -0.081 4.081 12 C -0.218 4.218 13 C -0.109 4.109 14 C 0.552 3.448 15 O -0.471 6.471 16 N -0.659 5.659 17 C 0.411 3.589 18 C -0.227 4.227 19 C -0.020 4.020 20 C -0.238 4.238 21 C 0.343 3.657 22 F -0.111 7.111 23 N -0.511 5.511 24 C -0.131 4.131 25 H 0.287 0.713 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.421 0.579 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.837 -3.350 -0.161 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.139 4.139 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.166 1.166 7 C -0.467 4.467 8 H 0.113 0.887 9 C 0.079 3.921 10 C -0.240 4.240 11 C -0.099 4.099 12 C -0.238 4.238 13 C -0.112 4.112 14 C 0.341 3.659 15 O -0.341 6.341 16 N -0.306 5.306 17 C 0.178 3.822 18 C -0.251 4.251 19 C -0.045 4.045 20 C -0.261 4.261 21 C 0.188 3.812 22 F -0.089 7.089 23 N -0.232 5.232 24 C -0.151 4.151 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.114 0.886 29 H 0.260 0.740 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 18.140 -3.864 0.525 18.555 hybrid contribution 1.088 0.966 -0.356 1.498 sum 19.228 -2.898 0.169 19.446 Atomic orbital electron populations 1.69651 1.08009 1.30430 1.34879 1.26186 0.94891 1.01724 0.91069 0.86277 0.81041 0.79558 0.78991 1.19544 1.21766 1.16613 1.19564 0.91070 0.95908 1.40175 0.88714 1.17710 0.93520 0.90995 0.89874 1.21219 0.95016 1.03956 1.03760 1.20497 0.93734 0.97276 0.98421 1.20364 0.97464 1.00295 1.05662 1.19324 0.94005 0.96587 1.01303 1.19113 0.80683 0.84927 0.81147 1.90846 1.73157 1.36743 1.33369 1.43884 1.08273 1.36197 1.42288 1.18066 0.87479 0.87551 0.89124 1.21509 0.91711 1.04857 1.06981 1.21174 1.00407 0.91242 0.91696 1.21660 0.93469 1.04798 1.06217 1.17924 0.87380 0.86835 0.89107 1.91638 1.86187 1.62276 1.68848 1.66855 1.40209 1.05428 1.10685 1.21304 0.90785 1.01787 1.01211 0.90218 0.87717 0.88055 0.88570 0.73974 0.83796 0.83487 0.83691 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.11 13.93 55.55 0.77 -20.34 16 2 C 0.08 2.06 5.46 -17.34 -0.09 1.96 16 3 Si 0.91 20.04 24.41 -169.99 -4.15 15.89 16 4 H -0.27 -5.63 6.66 56.52 0.38 -5.25 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.24 -5.42 6.69 56.52 0.38 -5.04 16 7 C -0.44 -11.66 9.60 -37.73 -0.36 -12.02 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 C 0.08 2.02 5.12 -106.87 -0.55 1.48 16 10 C -0.22 -4.96 7.00 -38.81 -0.27 -5.23 16 11 C -0.08 -1.57 10.01 -39.73 -0.40 -1.97 16 12 C -0.22 -3.96 9.54 -38.91 -0.37 -4.33 16 13 C -0.11 -2.25 5.87 -105.04 -0.62 -2.87 16 14 C 0.55 10.84 7.73 -12.33 -0.10 10.75 16 15 O -0.47 -10.97 14.59 5.32 0.08 -10.90 16 16 N -0.66 -9.79 5.33 -12.30 -0.07 -9.85 16 17 C 0.41 5.93 7.42 -154.76 -1.15 4.78 16 18 C -0.23 -2.19 9.94 -39.23 -0.39 -2.58 16 19 C -0.02 -0.16 10.16 -39.34 -0.40 -0.56 16 20 C -0.24 -2.36 10.08 -39.34 -0.40 -2.76 16 21 C 0.34 4.94 8.41 -17.37 -0.15 4.80 16 22 F -0.11 -1.66 17.29 2.25 0.04 -1.62 16 23 N -0.51 -8.92 7.90 -12.72 -0.10 -9.02 16 24 C -0.13 -3.09 9.34 -38.44 -0.36 -3.45 16 25 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 26 H 0.11 2.34 4.43 -52.49 -0.23 2.11 16 27 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.10 1.32 6.39 -52.49 -0.34 0.99 16 29 H 0.42 4.65 6.73 -40.82 -0.27 4.38 16 30 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.12 2.86 7.64 -52.48 -0.40 2.46 16 LS Contribution 293.36 15.07 4.42 4.42 Total: -1.00 -31.24 293.36 -7.14 -38.38 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -2.54 Total: 5.02 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -5.60 Total: -11.99 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.61 Total: -39.21 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.90 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.15 Total: 15.89 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.24 -7.14 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160750326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.839 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds