Wall clock time and date at job start Tue Mar 31 2020 05:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 120.00494 * 2 1 4 4 H 1.48502 * 109.46924 * 272.52763 * 3 2 1 5 5 H 1.48495 * 109.46874 * 32.52206 * 3 2 1 6 6 H 1.48494 * 109.47070 * 152.52736 * 3 2 1 7 7 C 1.39946 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99428 * 347.51265 * 7 2 1 9 9 C 1.41435 * 119.99922 * 167.51611 * 7 2 1 10 10 C 1.40795 * 120.17550 * 328.65412 * 9 7 2 11 11 C 1.37711 * 120.04034 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41814 * 359.74446 * 11 10 9 13 13 C 1.39896 * 120.35140 * 0.51363 * 12 11 10 14 14 C 1.47847 * 120.02644 * 179.76180 * 13 12 11 15 15 O 1.21548 * 120.00154 * 179.72655 * 14 13 12 16 16 N 1.34776 * 119.99904 * 359.45292 * 14 13 12 17 17 C 1.39310 * 120.00386 * 175.35699 * 16 14 13 18 18 C 1.38994 * 119.68669 * 185.21931 * 17 16 14 19 19 C 1.38424 * 119.15914 * 179.79490 * 18 17 16 20 20 C 1.38713 * 118.52938 * 0.46906 * 19 18 17 21 21 C 1.38417 * 119.29183 * 359.75392 * 20 19 18 22 22 F 1.35102 * 119.61150 * 180.02562 * 21 20 19 23 23 N 1.32109 * 120.78468 * 0.02562 * 21 20 19 24 24 C 1.39047 * 119.94845 * 359.48936 * 13 12 11 25 25 H 0.97005 * 119.99392 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.97602 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.78968 * 180.02562 * 11 10 9 28 28 H 1.08001 * 119.82420 * 180.27849 * 12 11 10 29 29 H 0.97006 * 120.00320 * 355.35713 * 16 14 13 30 30 H 1.08005 * 120.41654 * 0.02562 * 18 17 16 31 31 H 1.08008 * 120.73153 * 180.20049 * 19 18 17 32 32 H 1.08002 * 120.35628 * 179.76856 * 20 19 18 33 33 H 1.08006 * 120.20499 * 180.22510 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4365 2.0772 -1.3987 5 1 1.4677 2.6366 0.7527 6 1 3.5656 1.4251 0.6459 7 6 2.0080 -1.2120 0.0005 8 1 1.4870 -2.1361 0.2032 9 6 3.3973 -1.2267 -0.2642 10 6 3.9633 -0.2694 -1.1277 11 6 5.3162 -0.2865 -1.3839 12 6 6.1291 -1.2378 -0.7933 13 6 5.5838 -2.2002 0.0632 14 6 6.4582 -3.2165 0.6863 15 8 5.9848 -4.0495 1.4343 16 7 7.7795 -3.2228 0.4207 17 6 8.6186 -4.1176 1.0811 18 6 9.9927 -4.0462 0.8841 19 6 10.8166 -4.9378 1.5491 20 6 10.2353 -5.8806 2.3842 21 6 8.8591 -5.8985 2.5309 22 9 8.2861 -6.8136 3.3431 23 7 8.0990 -5.0314 1.8862 24 6 4.2196 -2.1967 0.3324 25 1 -0.4849 0.8401 -0.0004 26 1 3.3360 0.4788 -1.5893 27 1 5.7462 0.4499 -2.0466 28 1 7.1896 -1.2396 -0.9975 29 1 8.1464 -2.6043 -0.2304 30 1 10.4124 -3.3020 0.2234 31 1 11.8880 -4.9030 1.4172 32 1 10.8500 -6.5929 2.9145 33 1 3.7948 -2.9356 0.9958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160750326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:05 Heat of formation + Delta-G solvation = -26.000536 kcal Electronic energy + Delta-G solvation = -20841.449026 eV Core-core repulsion = 17360.213817 eV Total energy + Delta-G solvation = -3481.235209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.03778 -41.93421 -40.39475 -39.02420 -36.11377 -35.53932 -33.60220 -32.68085 -31.87353 -30.66011 -27.22488 -25.79981 -24.64297 -23.86025 -22.50226 -21.71839 -20.08552 -19.28163 -18.28220 -18.03516 -17.27220 -17.20427 -17.02105 -16.84837 -16.48611 -16.21282 -15.62209 -15.47139 -14.70612 -14.60229 -14.52743 -14.36568 -14.05342 -13.86608 -13.40137 -13.22726 -12.91382 -12.67314 -12.35547 -11.83652 -11.75144 -11.64067 -11.47392 -11.06703 -10.90667 -10.29597 -9.70616 -9.64200 -9.32441 -8.90551 -6.60210 -0.23578 0.11588 0.34837 0.71508 1.24081 1.41057 1.48138 1.68395 1.86879 2.10633 2.57172 2.63544 2.75041 3.40229 3.52632 3.78855 3.88517 4.14388 4.22567 4.23369 4.37010 4.52100 4.70248 4.82749 4.87762 4.92397 5.09858 5.11154 5.19254 5.37589 5.57623 5.64778 5.72668 5.80810 5.95488 6.15557 6.27637 6.61140 6.70581 6.77426 7.17094 8.18917 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.032340 B = 0.003652 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.597975 B = 7664.246116 C = 8300.883623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.039 3.961 3 Si 0.974 3.026 4 H -0.242 1.242 5 H -0.281 1.281 6 H -0.247 1.247 7 C -0.490 4.490 8 H 0.045 0.955 9 C 0.066 3.934 10 C -0.221 4.221 11 C -0.080 4.080 12 C -0.175 4.175 13 C -0.114 4.114 14 C 0.552 3.448 15 O -0.524 6.524 16 N -0.641 5.641 17 C 0.369 3.631 18 C -0.195 4.195 19 C -0.007 4.007 20 C -0.211 4.211 21 C 0.295 3.705 22 F -0.131 7.131 23 N -0.573 5.573 24 C -0.166 4.166 25 H 0.295 0.705 26 H 0.110 0.890 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.440 0.560 30 H 0.191 0.809 31 H 0.204 0.796 32 H 0.177 0.823 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.676 -1.124 -2.229 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.174 4.174 3 Si 0.796 3.204 4 H -0.167 1.167 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.063 3.937 10 C -0.240 4.240 11 C -0.097 4.097 12 C -0.194 4.194 13 C -0.117 4.117 14 C 0.341 3.659 15 O -0.398 6.398 16 N -0.290 5.290 17 C 0.138 3.862 18 C -0.218 4.218 19 C -0.032 4.032 20 C -0.233 4.233 21 C 0.141 3.859 22 F -0.111 7.111 23 N -0.295 5.295 24 C -0.187 4.187 25 H 0.105 0.895 26 H 0.127 0.873 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.283 0.717 30 H 0.208 0.792 31 H 0.221 0.779 32 H 0.195 0.805 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 25.048 -1.654 -1.566 25.151 hybrid contribution -0.624 0.080 0.265 0.683 sum 24.423 -1.575 -1.301 24.509 Atomic orbital electron populations 1.69702 1.09381 1.31615 1.37719 1.26990 0.95603 1.04586 0.90260 0.85403 0.79328 0.75369 0.80329 1.16679 1.20803 1.17055 1.19490 0.92722 0.95049 1.44719 0.93659 1.17757 0.92659 0.92390 0.90855 1.21467 0.97026 1.02837 1.02655 1.21096 0.92144 0.98162 0.98342 1.21093 1.00451 0.96754 1.01097 1.19584 0.92882 0.97621 1.01594 1.18963 0.82377 0.84006 0.80509 1.90834 1.74620 1.38602 1.35757 1.43429 1.06368 1.36732 1.42498 1.18487 0.89212 0.88058 0.90474 1.22039 0.89091 1.04871 1.05760 1.21887 1.02792 0.89108 0.89451 1.22123 0.91291 1.04883 1.05028 1.18431 0.89129 0.87582 0.90721 1.91578 1.86812 1.63036 1.69649 1.66513 1.43393 1.07191 1.12353 1.21192 0.92853 1.02134 1.02505 0.89473 0.87269 0.82689 0.82277 0.71688 0.79150 0.77894 0.80511 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.27 13.93 21.83 0.30 -47.96 16 2 C 0.04 2.11 5.46 85.26 0.47 2.58 16 3 Si 0.97 41.50 24.41 68.60 1.67 43.17 16 4 H -0.24 -9.20 6.66 99.48 0.66 -8.54 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.25 -10.54 6.69 99.48 0.67 -9.87 16 7 C -0.49 -28.63 9.60 23.47 0.23 -28.41 16 8 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 9 C 0.07 3.40 5.12 -21.32 -0.11 3.29 16 10 C -0.22 -9.56 7.00 22.77 0.16 -9.40 16 11 C -0.08 -2.66 10.01 22.18 0.22 -2.44 16 12 C -0.17 -5.44 9.54 22.70 0.22 -5.22 16 13 C -0.11 -4.61 5.87 -20.14 -0.12 -4.73 16 14 C 0.55 21.70 7.73 86.79 0.67 22.38 16 15 O -0.52 -26.00 14.59 -3.87 -0.06 -26.05 16 16 N -0.64 -17.17 5.33 -311.09 -1.66 -18.83 16 17 C 0.37 9.73 7.42 132.92 0.99 10.71 16 18 C -0.19 -2.60 9.94 22.50 0.22 -2.38 16 19 C -0.01 -0.07 10.16 22.43 0.23 0.16 16 20 C -0.21 -3.38 10.08 22.43 0.23 -3.16 16 21 C 0.29 8.45 8.41 84.69 0.71 9.16 16 22 F -0.13 -4.18 17.29 44.97 0.78 -3.40 16 23 N -0.57 -20.21 7.90 -194.15 -1.53 -21.74 16 24 C -0.17 -8.38 9.34 23.01 0.21 -8.17 16 25 H 0.29 14.78 8.30 -92.70 -0.77 14.01 16 26 H 0.11 4.62 4.43 -2.91 -0.01 4.61 16 27 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 28 H 0.16 3.01 6.39 -2.91 -0.02 2.99 16 29 H 0.44 7.22 6.73 -92.70 -0.62 6.60 16 30 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 31 H 0.20 -0.17 8.06 -2.91 -0.02 -0.20 16 32 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.08 4.65 7.64 -2.91 -0.02 4.63 16 Total: -1.00 -82.34 293.36 4.30 -78.03 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.47 Total: 12.42 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 4.32 Total: -15.63 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.89 Total: -88.54 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.06 Total: -26.05 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.67 Total: 43.17 kcal Total: -82.34 4.30 -78.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160750326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.032 kcal (2) G-P(sol) polarization free energy of solvation -82.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds