Wall clock time and date at job start Tue Mar 31 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86803 * 119.99946 * 2 1 4 4 H 1.48496 * 109.46630 * 272.52295 * 3 2 1 5 5 H 1.48495 * 109.47121 * 32.51862 * 3 2 1 6 6 H 1.48502 * 109.46980 * 152.52437 * 3 2 1 7 7 C 1.39936 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00387 * 347.52473 * 7 2 1 9 9 C 1.41439 * 119.99403 * 167.53175 * 7 2 1 10 10 C 1.40786 * 120.18047 * 328.64110 * 9 7 2 11 11 C 1.37711 * 120.04800 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41105 * 359.70500 * 11 10 9 13 13 C 1.39897 * 120.35536 * 0.55671 * 12 11 10 14 14 C 1.47853 * 120.02285 * 179.74300 * 13 12 11 15 15 O 1.21552 * 119.99298 * 179.71790 * 14 13 12 16 16 N 1.34767 * 120.00285 * 359.44726 * 14 13 12 17 17 C 1.39424 * 119.99964 * 175.34292 * 16 14 13 18 18 C 1.39046 * 119.67051 * 185.17985 * 17 16 14 19 19 C 1.38351 * 119.12334 * 180.02562 * 18 17 16 20 20 C 1.39007 * 118.47976 * 0.02562 * 19 18 17 21 21 F 1.35102 * 120.36804 * 179.97438 * 20 19 18 22 22 C 1.38283 * 119.26569 * 359.97438 * 20 19 18 23 23 N 1.31946 * 120.81386 * 359.72606 * 22 20 19 24 24 C 1.39049 * 119.94654 * 359.46440 * 13 12 11 25 25 H 0.96995 * 119.99992 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.97459 * 0.02829 * 10 9 7 27 27 H 1.07995 * 119.79367 * 180.02562 * 11 10 9 28 28 H 1.08003 * 119.82187 * 180.27586 * 12 11 10 29 29 H 0.97000 * 120.00095 * 355.34247 * 16 14 13 30 30 H 1.07997 * 120.43550 * 359.97438 * 18 17 16 31 31 H 1.08001 * 120.75423 * 180.02562 * 19 18 17 32 32 H 1.07997 * 119.59198 * 180.02562 * 22 20 19 33 33 H 1.07996 * 120.20422 * 180.23167 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4364 2.0772 -1.3987 5 1 1.4675 2.6367 0.7526 6 1 3.5656 1.4254 0.6460 7 6 2.0079 -1.2119 0.0005 8 1 1.4871 -2.1361 0.2030 9 6 3.3973 -1.2264 -0.2639 10 6 3.9635 -0.2693 -1.1273 11 6 5.3165 -0.2863 -1.3832 12 6 6.1294 -1.2369 -0.7916 13 6 5.5840 -2.1994 0.0647 14 6 6.4586 -3.2153 0.6885 15 8 5.9849 -4.0481 1.4365 16 7 7.7799 -3.2212 0.4234 17 6 8.6197 -4.1161 1.0853 18 6 9.9942 -4.0446 0.8879 19 6 10.8169 -4.9385 1.5499 20 6 10.2331 -5.8789 2.3909 21 9 11.0003 -6.7703 3.0557 22 6 8.8583 -5.8918 2.5395 23 7 8.1010 -5.0219 1.8987 24 6 4.2197 -2.1962 0.3333 25 1 -0.4850 0.8400 -0.0004 26 1 3.3362 0.4789 -1.5891 27 1 5.7465 0.4502 -2.0458 28 1 7.1900 -1.2387 -0.9956 29 1 8.1468 -2.6029 -0.2277 30 1 10.4139 -3.3017 0.2260 31 1 11.8881 -4.9064 1.4163 32 1 8.3993 -6.6199 3.1919 33 1 3.7949 -2.9350 0.9967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171179893.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:08 Heat of formation + Delta-G solvation = -28.741824 kcal Electronic energy + Delta-G solvation = -20695.092110 eV Core-core repulsion = 17213.738030 eV Total energy + Delta-G solvation = -3481.354080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.89787 -41.91777 -40.39193 -38.99678 -36.06446 -35.51682 -33.52960 -32.69403 -31.85810 -30.49504 -27.18578 -25.79583 -24.93897 -23.67869 -22.48017 -21.70081 -19.98296 -19.02110 -18.53341 -18.23001 -17.83473 -17.02930 -16.85838 -16.49568 -16.22793 -16.02152 -15.45454 -15.29414 -14.82275 -14.62080 -14.53017 -14.50213 -14.34089 -13.85953 -13.57934 -13.36486 -12.89461 -12.65089 -12.33378 -11.77966 -11.72229 -11.60937 -11.36204 -11.02891 -10.98471 -10.23605 -9.68131 -9.62178 -9.22581 -8.89195 -6.58411 -0.26284 0.11469 0.28036 0.73203 1.25088 1.41839 1.48815 1.76248 1.88671 2.11416 2.58079 2.75930 3.06492 3.29119 3.42991 3.75876 3.80328 3.88273 4.09960 4.24648 4.38307 4.52231 4.57745 4.78680 4.85625 4.87814 4.89950 5.12615 5.20006 5.39543 5.58961 5.66014 5.69813 5.82784 6.00883 6.19882 6.29945 6.62829 6.72580 6.85539 7.22680 8.20178 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.039868 B = 0.003334 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.144275 B = 8395.394649 C = 8856.521455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.039 3.961 3 Si 0.973 3.027 4 H -0.244 1.244 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.489 4.489 8 H 0.047 0.953 9 C 0.065 3.935 10 C -0.222 4.222 11 C -0.081 4.081 12 C -0.176 4.176 13 C -0.113 4.113 14 C 0.554 3.446 15 O -0.521 6.521 16 N -0.640 5.640 17 C 0.330 3.670 18 C -0.157 4.157 19 C -0.069 4.069 20 C 0.008 3.992 21 F -0.135 7.135 22 C 0.091 3.909 23 N -0.503 5.503 24 C -0.164 4.164 25 H 0.294 0.706 26 H 0.108 0.892 27 H 0.153 0.847 28 H 0.158 0.842 29 H 0.438 0.562 30 H 0.193 0.807 31 H 0.190 0.810 32 H 0.171 0.829 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.327 -1.380 -1.853 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.174 4.174 3 Si 0.795 3.205 4 H -0.169 1.169 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.519 4.519 8 H 0.065 0.935 9 C 0.063 3.937 10 C -0.241 4.241 11 C -0.099 4.099 12 C -0.195 4.195 13 C -0.116 4.116 14 C 0.343 3.657 15 O -0.394 6.394 16 N -0.289 5.289 17 C 0.099 3.901 18 C -0.180 4.180 19 C -0.095 4.095 20 C -0.015 4.015 21 F -0.114 7.114 22 C -0.068 4.068 23 N -0.218 5.218 24 C -0.184 4.184 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.171 0.829 28 H 0.176 0.824 29 H 0.280 0.720 30 H 0.210 0.790 31 H 0.207 0.793 32 H 0.188 0.812 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 22.736 -1.879 -1.204 22.845 hybrid contribution 0.040 0.153 0.149 0.217 sum 22.776 -1.726 -1.055 22.866 Atomic orbital electron populations 1.69699 1.09356 1.31573 1.37847 1.26967 0.95577 1.04538 0.90315 0.85417 0.79374 0.75505 0.80223 1.16889 1.20884 1.17003 1.19488 0.92705 0.95042 1.44625 0.93482 1.17763 0.92689 0.92410 0.90841 1.21462 0.96989 1.02914 1.02769 1.21079 0.92190 0.98203 0.98390 1.21090 1.00381 0.96857 1.01199 1.19589 0.92938 0.97603 1.01501 1.18876 0.82215 0.84020 0.80574 1.90816 1.74532 1.38439 1.35638 1.43367 1.06369 1.36772 1.42439 1.18992 0.89096 0.89877 0.92120 1.21798 0.89260 1.02970 1.03973 1.21829 1.03221 0.91622 0.92801 1.18798 0.89830 0.93601 0.99282 1.91503 1.74808 1.66158 1.78922 1.22943 0.89335 0.96787 0.97739 1.67652 1.40108 1.04933 1.09059 1.21201 0.92766 1.02055 1.02396 0.89518 0.87409 0.82922 0.82430 0.71980 0.79029 0.79254 0.81152 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.87 13.93 21.83 0.30 -47.57 16 2 C 0.04 2.11 5.46 85.25 0.47 2.57 16 3 Si 0.97 41.19 24.41 68.60 1.67 42.86 16 4 H -0.24 -9.27 6.66 99.48 0.66 -8.61 16 5 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.25 -10.43 6.69 99.48 0.67 -9.76 16 7 C -0.49 -28.12 9.60 23.47 0.23 -27.90 16 8 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 9 C 0.07 3.32 5.12 -21.32 -0.11 3.21 16 10 C -0.22 -9.53 7.00 22.77 0.16 -9.37 16 11 C -0.08 -2.67 10.01 22.18 0.22 -2.45 16 12 C -0.18 -5.38 9.54 22.70 0.22 -5.16 16 13 C -0.11 -4.45 5.87 -20.14 -0.12 -4.57 16 14 C 0.55 20.72 7.73 86.79 0.67 21.39 16 15 O -0.52 -24.20 14.59 -3.88 -0.06 -24.26 16 16 N -0.64 -16.37 5.33 -311.02 -1.66 -18.03 16 17 C 0.33 8.29 7.42 132.92 0.99 9.28 16 18 C -0.16 -2.22 9.94 22.49 0.22 -2.00 16 19 C -0.07 -0.90 10.15 22.48 0.23 -0.67 16 20 C 0.01 0.15 7.34 22.46 0.16 0.32 16 21 F -0.14 -2.60 17.28 44.97 0.78 -1.83 16 22 C 0.09 2.27 11.16 84.69 0.95 3.22 16 23 N -0.50 -16.00 7.88 -192.86 -1.52 -17.52 16 24 C -0.16 -8.02 9.34 23.01 0.21 -7.80 16 25 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 26 H 0.11 4.54 4.43 -2.91 -0.01 4.53 16 27 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 28 H 0.16 2.93 6.39 -2.91 -0.02 2.91 16 29 H 0.44 6.93 6.73 -92.71 -0.62 6.30 16 30 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.19 0.99 8.06 -2.91 -0.02 0.96 16 32 H 0.17 3.79 8.06 -2.91 -0.02 3.76 16 33 H 0.09 4.67 7.64 -2.91 -0.02 4.64 16 Total: -1.00 -75.36 293.36 4.49 -70.87 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.47 Total: 15.40 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 4.50 Total: -19.93 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.88 Total: -83.11 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.26 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.67 Total: 42.86 kcal Total: -75.36 4.49 -70.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171179893.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.128 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds