Wall clock time and date at job start Tue Mar 31 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30213 * 126.79305 * 2 1 4 4 O 1.20923 * 111.64864 * 179.97438 * 3 2 1 5 5 C 1.34061 * 111.55027 * 0.02562 * 4 3 2 6 6 Cl 1.73600 * 126.79752 * 179.97438 * 5 4 3 7 7 C 1.35676 * 106.40782 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.01454 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47425 * 90.01905 * 8 7 5 10 10 O 1.21289 * 119.99917 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99940 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99535 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46599 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47075 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47113 * 180.02562 * 14 13 12 16 16 H 1.07988 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99600 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99876 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99585 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47329 * 89.99805 * 19 17 15 21 21 H 1.48505 * 109.46774 * 209.99709 * 19 17 15 22 22 H 1.48502 * 109.47226 * 329.99510 * 19 17 15 23 23 H 1.08997 * 109.47781 * 90.01477 * 1 2 3 24 24 H 1.09000 * 109.47426 * 210.02529 * 1 2 3 25 25 H 1.09005 * 109.46928 * 330.01776 * 1 2 3 26 26 H 1.09002 * 109.47001 * 210.02490 * 8 7 5 27 27 H 1.09007 * 109.46954 * 330.02154 * 8 7 5 28 28 H 0.96998 * 120.00432 * 0.02562 * 11 9 8 29 29 H 1.08997 * 109.46852 * 299.99594 * 12 11 9 30 30 H 1.08990 * 109.47424 * 60.00236 * 12 11 9 31 31 H 1.08997 * 109.47190 * 299.99390 * 13 12 11 32 32 H 1.09007 * 109.47279 * 59.99794 * 13 12 11 33 33 H 1.09002 * 109.47255 * 300.00022 * 14 13 12 34 34 H 1.08999 * 109.47179 * 59.99606 * 14 13 12 35 35 H 0.96998 * 119.99197 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4540 0.7268 0.0005 5 6 3.6036 -0.6054 0.0004 6 17 5.1011 -1.4837 0.0003 7 6 2.3530 -1.1315 0.0003 8 6 1.9578 -2.5858 -0.0005 9 6 1.8259 -3.0712 1.4201 10 8 2.0319 -2.3109 2.3424 11 7 1.4789 -4.3502 1.6656 12 6 1.3500 -4.8219 3.0467 13 6 0.9490 -6.2984 3.0458 14 6 0.8150 -6.7913 4.4881 15 6 0.4206 -8.2458 4.4873 16 1 0.2792 -8.7664 3.5518 17 6 0.2393 -8.9115 5.6811 18 7 0.4110 -8.2773 6.8203 19 14 -0.2503 -10.7142 5.6801 20 1 0.9711 -11.5589 5.6803 21 1 -1.0562 -11.0089 6.8921 22 1 -1.0550 -11.0079 4.4670 23 1 -0.3634 -0.0003 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5136 26 1 1.0039 -2.7028 -0.5146 27 1 2.7216 -3.1695 -0.5144 28 1 1.3145 -4.9583 0.9281 29 1 2.3037 -4.7043 3.5612 30 1 0.5858 -4.2385 3.5601 31 1 -0.0048 -6.4155 2.5315 32 1 1.7129 -6.8822 2.5322 33 1 1.7690 -6.6742 5.0022 34 1 0.0514 -6.2076 5.0021 35 1 0.2838 -8.7458 7.6601 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171592775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:55 Heat of formation + Delta-G solvation = -21.763087 kcal Electronic energy + Delta-G solvation = -19485.494789 eV Core-core repulsion = 16125.470785 eV Total energy + Delta-G solvation = -3360.024004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.15530 -40.73281 -38.30127 -37.07529 -36.32109 -35.17037 -33.62181 -32.94495 -30.33494 -29.64191 -28.20411 -25.08183 -23.29284 -22.56696 -22.28407 -21.21416 -19.04718 -18.86405 -18.51180 -17.84373 -17.02893 -16.84616 -16.46710 -16.22725 -15.53831 -14.83964 -14.72065 -14.28309 -14.20470 -14.13410 -13.75418 -13.67254 -13.58502 -13.48082 -13.14212 -12.86728 -12.71242 -12.52720 -12.35559 -11.97425 -11.64369 -11.58535 -11.24738 -11.15673 -10.84541 -10.54354 -10.29577 -10.06984 -8.18537 -6.29924 -0.05796 0.11923 0.94651 1.43024 1.44073 1.55035 1.63800 2.25451 2.43524 2.52419 2.98157 3.15558 3.45692 3.73422 3.75320 4.02409 4.23866 4.24627 4.41671 4.57939 4.58541 4.65651 4.67312 4.73852 4.97645 5.03891 5.14497 5.20241 5.46233 5.55377 5.73048 5.86081 6.23480 6.61156 6.88431 6.94917 7.29236 7.39971 8.93575 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.031192 B = 0.002739 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.447583 B =10220.137080 C =10645.327426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.041 3.959 3 N -0.375 5.375 4 O 0.093 5.907 5 C 0.004 3.996 6 Cl 0.061 6.939 7 C -0.156 4.156 8 C -0.060 4.060 9 C 0.509 3.491 10 O -0.585 6.585 11 N -0.711 5.711 12 C 0.131 3.869 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.258 1.258 23 H 0.113 0.887 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.420 0.580 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.069 0.931 33 H -0.011 1.011 34 H -0.009 1.009 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 12.626 -21.167 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 N -0.085 5.085 4 O 0.030 5.970 5 C -0.086 4.086 6 Cl 0.089 6.911 7 C -0.162 4.162 8 C -0.099 4.099 9 C 0.296 3.704 10 O -0.465 6.465 11 N -0.363 5.363 12 C 0.006 3.994 13 C -0.139 4.139 14 C -0.016 4.016 15 C -0.578 4.578 16 H 0.087 0.913 17 C -0.202 4.202 18 N -0.577 5.577 19 Si 0.791 3.209 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.182 1.182 23 H 0.131 0.869 24 H 0.109 0.891 25 H 0.098 0.902 26 H 0.172 0.828 27 H 0.156 0.844 28 H 0.257 0.743 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.008 0.992 34 H 0.009 0.991 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.385 14.365 -20.336 25.127 hybrid contribution 0.167 -1.738 0.622 1.854 sum 3.552 12.627 -19.714 23.679 Atomic orbital electron populations 1.20399 0.83117 1.04725 1.05350 1.23847 1.00507 0.87461 0.99952 1.73910 0.88814 1.23945 1.21785 1.84861 1.22261 1.21193 1.68709 1.24797 0.91798 0.84879 1.07110 1.98460 1.27577 1.68467 1.96573 1.20428 0.89771 0.97866 1.08089 1.20125 1.08084 0.88315 0.93421 1.21015 0.75814 0.81683 0.91880 1.90736 1.51539 1.56183 1.48058 1.45902 1.69755 1.11533 1.09120 1.21193 1.00061 0.95285 0.82827 1.21592 1.01611 0.92437 0.98267 1.18956 0.94930 0.95146 0.92535 1.21702 1.46329 0.96859 0.92862 0.91350 1.26032 0.95488 1.03371 0.95305 1.70117 1.50878 1.38611 0.98066 0.85426 0.78423 0.79136 0.77930 1.19907 1.21219 1.18223 0.86908 0.89081 0.90235 0.82834 0.84356 0.74291 0.93628 0.93358 0.91036 0.91219 0.99209 0.99075 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.39 71.23 0.74 -0.38 16 2 C 0.04 0.88 7.32 43.54 0.32 1.20 16 3 N -0.37 -9.59 12.07 -49.42 -0.60 -10.18 16 4 O 0.09 2.33 11.20 71.44 0.80 3.13 16 5 C 0.00 0.09 8.12 67.23 0.55 0.64 16 6 Cl 0.06 1.12 29.23 -2.72 -0.08 1.04 16 7 C -0.16 -3.18 4.82 -19.71 -0.10 -3.28 16 8 C -0.06 -0.86 6.10 29.10 0.18 -0.68 16 9 C 0.51 12.36 7.82 87.66 0.69 13.05 16 10 O -0.59 -20.62 16.03 -3.06 -0.05 -20.67 16 11 N -0.71 -16.33 5.56 -463.05 -2.57 -18.90 16 12 C 0.13 4.27 5.67 86.38 0.49 4.76 16 13 C -0.10 -3.64 5.27 30.60 0.16 -3.48 16 14 C 0.02 1.12 4.97 29.85 0.15 1.26 16 15 C -0.54 -29.41 9.11 25.60 0.23 -29.17 16 16 H 0.07 3.47 7.74 -2.92 -0.02 3.45 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.94 -56.74 13.29 21.45 0.28 -56.45 16 19 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.14 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.42 6.31 8.47 -92.71 -0.79 5.52 16 29 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 33 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -74.37 327.38 4.01 -70.36 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 0.33 Total: 2.49 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 3.87 Total: -15.86 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -2.88 Total: -85.54 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.75 Total: -17.54 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 17 Polarization: 1.12 SS G_CDS: -0.08 Total: 1.04 kcal Total: -74.37 4.01 -70.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171592775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.592 kcal (2) G-P(sol) polarization free energy of solvation -74.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds