Wall clock time and date at job start Tue Mar 31 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00344 * 2 1 4 4 H 1.48493 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46888 * 299.99825 * 3 2 1 6 6 H 1.48502 * 109.46998 * 59.99760 * 3 2 1 7 7 C 1.37883 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00051 * 165.31914 * 7 2 1 9 9 C 1.50698 * 119.99628 * 345.32302 * 7 2 1 10 10 C 1.52993 * 115.55439 * 324.81906 * 9 7 2 11 11 O 1.45202 * 109.47533 * 306.36370 * 10 9 7 12 12 C 1.34857 * 117.00500 * 183.78763 * 11 10 9 13 13 O 1.21583 * 119.99401 * 4.86446 * 12 11 10 14 14 C 1.46798 * 120.00153 * 184.86294 * 12 11 10 15 15 C 1.35897 * 125.14146 * 175.22953 * 14 12 11 16 16 C 1.46216 * 106.07429 * 179.97438 * 15 14 12 17 17 C 1.39725 * 134.17856 * 179.97438 * 16 15 14 18 18 C 1.36615 * 119.70897 * 180.02562 * 17 16 15 19 19 C 1.38846 * 120.44168 * 359.97438 * 18 17 16 20 20 C 1.37794 * 120.75139 * 0.02562 * 19 18 17 21 21 C 1.39027 * 119.85479 * 359.97438 * 20 19 18 22 22 O 1.34717 * 133.23093 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.49809 * 110.49496 * 9 7 2 24 24 C 1.53008 * 117.49486 * 179.15320 * 9 7 2 25 25 H 0.97005 * 119.99377 * 5.03566 * 1 2 3 26 26 H 1.08998 * 109.47712 * 186.35981 * 10 9 7 27 27 H 1.09000 * 109.47245 * 66.36201 * 10 9 7 28 28 H 1.08001 * 126.96163 * 359.96738 * 15 14 12 29 29 H 1.07995 * 120.14620 * 359.97438 * 17 16 15 30 30 H 1.07997 * 119.77653 * 180.02562 * 18 17 16 31 31 H 1.07997 * 119.62385 * 180.27757 * 19 18 17 32 32 H 1.07994 * 120.07553 * 179.97438 * 20 19 18 33 33 H 1.09004 * 117.50241 * 214.99691 * 23 9 7 34 34 H 1.08998 * 117.50131 * 0.02562 * 23 9 7 35 35 H 1.09001 * 117.50054 * 359.97401 * 24 9 7 36 36 H 1.08999 * 117.49637 * 144.97111 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0580 -1.2095 -0.2365 9 6 1.2878 -2.4777 0.3318 10 6 0.1874 -2.3653 1.3888 11 8 0.7267 -1.7432 2.5848 12 6 -0.0981 -1.6406 3.6468 13 8 -1.2068 -2.1379 3.6055 14 6 0.3426 -0.9285 4.8524 15 6 -0.4307 -0.6830 5.9426 16 6 0.4177 0.0444 6.8854 17 6 0.2216 0.5739 8.1634 18 6 1.2483 1.2172 8.7947 19 6 2.4840 1.3472 8.1749 20 6 2.6979 0.8321 6.9149 21 6 1.6682 0.1734 6.2525 22 8 1.5776 -0.4196 5.0463 23 6 1.0776 -3.4825 -0.8027 24 6 2.1035 -3.7717 0.2961 25 1 -0.4849 0.8369 -0.0737 26 1 -0.1849 -3.3602 1.6330 27 1 -0.6293 -1.7572 0.9998 28 1 -1.4630 -0.9676 6.0839 29 1 -0.7376 0.4759 8.6498 30 1 1.0981 1.6265 9.7827 31 1 3.2878 1.8543 8.6878 32 1 3.6632 0.9399 6.4428 33 1 0.1554 -4.0635 -0.7961 34 1 1.4582 -3.2154 -1.7886 35 1 3.1584 -3.6947 0.0325 36 1 1.8563 -4.5427 1.0259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174745308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:36 Heat of formation + Delta-G solvation = -22.520668 kcal Electronic energy + Delta-G solvation = -21835.821654 eV Core-core repulsion = 18445.904898 eV Total energy + Delta-G solvation = -3389.916757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.45221 -39.54173 -37.92619 -36.82872 -35.23934 -32.83721 -32.17716 -30.54331 -29.82827 -26.89321 -25.46872 -24.16680 -22.72501 -21.70731 -21.25393 -20.44539 -19.23485 -17.97013 -17.46234 -16.77233 -16.41403 -16.05612 -15.74185 -15.24722 -14.64986 -14.56431 -14.14018 -13.82278 -13.39400 -13.16555 -12.95551 -12.43443 -12.17613 -12.13023 -12.09036 -11.66333 -11.09807 -10.97749 -10.87128 -10.52403 -10.40859 -10.33707 -10.28224 -9.66401 -9.53045 -9.16949 -8.79211 -8.75567 -8.34484 -8.12834 -6.09961 -4.09697 0.50423 1.23674 1.79557 2.47232 3.17658 3.26882 3.36529 3.39747 3.40468 3.57349 4.36398 4.47260 4.60302 4.75982 4.94055 4.98374 5.08549 5.19358 5.35603 5.47131 5.54264 5.70542 5.95786 6.00724 6.10624 6.14228 6.23912 6.26385 6.37962 6.46730 6.54479 6.62392 6.71054 6.91247 7.03422 7.19685 7.28928 7.31398 7.86970 8.26154 8.37085 8.84172 9.49473 10.93796 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.005049 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.776435 B = 5544.299945 C = 6328.134413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.076 3.924 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.483 4.483 8 H 0.064 0.936 9 C 0.046 3.954 10 C 0.113 3.887 11 O -0.308 6.308 12 C 0.537 3.463 13 O -0.497 6.497 14 C 0.017 3.983 15 C -0.122 4.122 16 C -0.144 4.144 17 C -0.061 4.061 18 C -0.142 4.142 19 C -0.087 4.087 20 C -0.108 4.108 21 C 0.070 3.930 22 O -0.164 6.164 23 C -0.190 4.190 24 C -0.209 4.209 25 H 0.263 0.737 26 H 0.035 0.965 27 H 0.114 0.886 28 H 0.172 0.828 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 1.584 15.532 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.127 4.127 3 Si 0.721 3.279 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.520 4.520 8 H 0.082 0.918 9 C 0.046 3.954 10 C 0.041 3.959 11 O -0.221 6.221 12 C 0.380 3.620 13 O -0.389 6.389 14 C -0.032 4.032 15 C -0.142 4.142 16 C -0.145 4.145 17 C -0.079 4.079 18 C -0.161 4.161 19 C -0.105 4.105 20 C -0.126 4.126 21 C 0.021 3.979 22 O -0.064 6.064 23 C -0.228 4.228 24 C -0.246 4.246 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.132 0.868 28 H 0.190 0.810 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.130 1.526 15.313 15.430 hybrid contribution 0.211 0.770 -0.113 0.806 sum 1.341 2.296 15.200 15.431 Atomic orbital electron populations 1.69818 1.06181 1.26998 1.49037 1.24918 0.94727 0.99228 0.93813 0.86512 0.80471 0.83350 0.77617 1.19482 1.21062 1.20716 1.20437 0.95383 0.89132 1.47079 0.91776 1.18863 0.94425 0.89562 0.92554 1.22963 0.98773 0.94623 0.79589 1.86692 1.42048 1.71847 1.21528 1.19333 0.83114 0.77112 0.82421 1.90875 1.20664 1.45067 1.82307 1.21065 0.83924 1.02414 0.95753 1.22689 1.00586 0.99916 0.90990 1.19909 0.93753 1.04060 0.96776 1.20338 0.99550 0.95950 0.92036 1.20766 0.93202 1.01409 1.00682 1.20981 0.97630 0.98396 0.93526 1.20053 0.97655 0.99992 0.94924 1.19876 0.96207 0.97375 0.84415 1.84227 1.30888 1.59274 1.31990 1.22974 0.98778 1.05865 0.95136 1.22981 0.96810 1.02251 1.02572 0.92693 0.94691 0.86826 0.81016 0.85223 0.85232 0.84647 0.84550 0.91397 0.89660 0.90198 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 10.95 55.43 0.61 -24.09 16 2 C 0.08 2.09 5.13 -17.82 -0.09 2.00 16 3 Si 0.89 21.44 29.57 -169.99 -5.03 16.41 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.48 -13.24 8.75 -34.44 -0.30 -13.54 16 8 H 0.06 1.75 7.86 -52.49 -0.41 1.34 16 9 C 0.05 1.16 2.10 -155.66 -0.33 0.84 16 10 C 0.11 2.79 4.66 37.15 0.17 2.97 16 11 O -0.31 -7.59 9.88 -42.71 -0.42 -8.01 16 12 C 0.54 11.84 7.93 34.19 0.27 12.11 16 13 O -0.50 -11.24 16.55 -19.33 -0.32 -11.56 16 14 C 0.02 0.33 7.10 -36.96 -0.26 0.07 16 15 C -0.12 -1.93 10.81 -37.22 -0.40 -2.33 16 16 C -0.14 -2.08 6.38 -105.19 -0.67 -2.75 16 17 C -0.06 -0.67 10.06 -39.61 -0.40 -1.06 16 18 C -0.14 -1.32 9.98 -39.94 -0.40 -1.72 16 19 C -0.09 -0.84 10.01 -39.52 -0.40 -1.23 16 20 C -0.11 -1.34 10.07 -39.45 -0.40 -1.73 16 21 C 0.07 1.11 7.41 -38.34 -0.28 0.83 16 22 O -0.16 -3.15 10.60 2.00 0.02 -3.13 16 23 C -0.19 -4.22 9.96 -26.69 -0.27 -4.49 16 24 C -0.21 -4.54 9.92 -26.69 -0.26 -4.81 16 25 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 26 H 0.03 0.80 7.95 -51.93 -0.41 0.39 16 27 H 0.11 3.06 6.12 -51.93 -0.32 2.74 16 28 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 35 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -30.45 322.23 -8.38 -38.83 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.08 Total: 1.55 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -4.02 Total: -14.86 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.61 Total: -24.09 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.72 Total: -22.69 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.45 -8.38 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174745308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.309 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds