Wall clock time and date at job start Tue Mar 31 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00344 * 2 1 4 4 H 1.48493 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46888 * 299.99825 * 3 2 1 6 6 H 1.48502 * 109.46998 * 59.99760 * 3 2 1 7 7 C 1.37883 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00051 * 165.31914 * 7 2 1 9 9 C 1.50698 * 119.99628 * 345.32302 * 7 2 1 10 10 C 1.52993 * 115.55439 * 324.81906 * 9 7 2 11 11 O 1.45202 * 109.47533 * 306.36370 * 10 9 7 12 12 C 1.34857 * 117.00500 * 183.78763 * 11 10 9 13 13 O 1.21583 * 119.99401 * 4.86446 * 12 11 10 14 14 C 1.46798 * 120.00153 * 184.86294 * 12 11 10 15 15 C 1.35897 * 125.14146 * 175.22953 * 14 12 11 16 16 C 1.46216 * 106.07429 * 179.97438 * 15 14 12 17 17 C 1.39725 * 134.17856 * 179.97438 * 16 15 14 18 18 C 1.36615 * 119.70897 * 180.02562 * 17 16 15 19 19 C 1.38846 * 120.44168 * 359.97438 * 18 17 16 20 20 C 1.37794 * 120.75139 * 0.02562 * 19 18 17 21 21 C 1.39027 * 119.85479 * 359.97438 * 20 19 18 22 22 O 1.34717 * 133.23093 * 179.97438 * 21 20 19 23 23 C 1.53000 * 117.49809 * 110.49496 * 9 7 2 24 24 C 1.53008 * 117.49486 * 179.15320 * 9 7 2 25 25 H 0.97005 * 119.99377 * 5.03566 * 1 2 3 26 26 H 1.08998 * 109.47712 * 186.35981 * 10 9 7 27 27 H 1.09000 * 109.47245 * 66.36201 * 10 9 7 28 28 H 1.08001 * 126.96163 * 359.96738 * 15 14 12 29 29 H 1.07995 * 120.14620 * 359.97438 * 17 16 15 30 30 H 1.07997 * 119.77653 * 180.02562 * 18 17 16 31 31 H 1.07997 * 119.62385 * 180.27757 * 19 18 17 32 32 H 1.07994 * 120.07553 * 179.97438 * 20 19 18 33 33 H 1.09004 * 117.50241 * 214.99691 * 23 9 7 34 34 H 1.08998 * 117.50131 * 0.02562 * 23 9 7 35 35 H 1.09001 * 117.50054 * 359.97401 * 24 9 7 36 36 H 1.08999 * 117.49637 * 144.97111 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0580 -1.2095 -0.2365 9 6 1.2878 -2.4777 0.3318 10 6 0.1874 -2.3653 1.3888 11 8 0.7267 -1.7432 2.5848 12 6 -0.0981 -1.6406 3.6468 13 8 -1.2068 -2.1379 3.6055 14 6 0.3426 -0.9285 4.8524 15 6 -0.4307 -0.6830 5.9426 16 6 0.4177 0.0444 6.8854 17 6 0.2216 0.5739 8.1634 18 6 1.2483 1.2172 8.7947 19 6 2.4840 1.3472 8.1749 20 6 2.6979 0.8321 6.9149 21 6 1.6682 0.1734 6.2525 22 8 1.5776 -0.4196 5.0463 23 6 1.0776 -3.4825 -0.8027 24 6 2.1035 -3.7717 0.2961 25 1 -0.4849 0.8369 -0.0737 26 1 -0.1849 -3.3602 1.6330 27 1 -0.6293 -1.7572 0.9998 28 1 -1.4630 -0.9676 6.0839 29 1 -0.7376 0.4759 8.6498 30 1 1.0981 1.6265 9.7827 31 1 3.2878 1.8543 8.6878 32 1 3.6632 0.9399 6.4428 33 1 0.1554 -4.0635 -0.7961 34 1 1.4582 -3.2154 -1.7886 35 1 3.1584 -3.6947 0.0325 36 1 1.8563 -4.5427 1.0259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174745308.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:36 Heat of formation + Delta-G solvation = -38.104446 kcal Electronic energy + Delta-G solvation = -21836.497418 eV Core-core repulsion = 18445.904898 eV Total energy + Delta-G solvation = -3390.592520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.104 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.63887 -41.25511 -38.90061 -38.63418 -37.03684 -34.23199 -33.98933 -31.48951 -30.99354 -28.63958 -27.48880 -25.52375 -23.76254 -23.04915 -22.76643 -21.85945 -21.18135 -19.44995 -18.72735 -18.46585 -17.87934 -17.52047 -17.00492 -16.95942 -16.47625 -15.83602 -15.48264 -15.11406 -14.96336 -14.30043 -14.24118 -14.05147 -13.89394 -13.61226 -13.30436 -12.91347 -12.90858 -12.86405 -12.38655 -12.17596 -12.11750 -11.97691 -11.57813 -11.40687 -11.39811 -11.16983 -10.69286 -10.09993 -9.74676 -9.40230 -8.15957 -6.20973 -0.67462 0.30123 0.62115 1.16466 1.33405 1.38947 1.48346 1.67345 1.92262 2.36677 2.67751 2.95733 3.31265 3.51991 3.59016 3.79679 3.88781 4.11411 4.12699 4.27003 4.29804 4.42158 4.47984 4.53898 4.68064 4.73461 4.86716 4.90556 5.02885 5.13989 5.21790 5.30916 5.32509 5.42406 5.44116 5.50217 5.58045 5.76708 5.98441 6.28590 6.58182 6.76976 7.39524 8.86471 Molecular weight = 286.10amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.005049 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.776435 B = 5544.299945 C = 6328.134413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.034 3.966 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.500 4.500 8 H 0.056 0.944 9 C 0.004 3.996 10 C 0.122 3.878 11 O -0.330 6.330 12 C 0.535 3.465 13 O -0.516 6.516 14 C -0.037 4.037 15 C -0.087 4.087 16 C -0.166 4.166 17 C -0.057 4.057 18 C -0.133 4.133 19 C -0.063 4.063 20 C -0.133 4.133 21 C 0.041 3.959 22 O -0.198 6.198 23 C -0.178 4.178 24 C -0.188 4.188 25 H 0.262 0.738 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.193 0.807 29 H 0.160 0.840 30 H 0.174 0.826 31 H 0.177 0.823 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 2.653 18.616 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.166 4.166 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.214 1.214 7 C -0.537 4.537 8 H 0.074 0.926 9 C 0.004 3.996 10 C 0.049 3.951 11 O -0.245 6.245 12 C 0.380 3.620 13 O -0.409 6.409 14 C -0.085 4.085 15 C -0.106 4.106 16 C -0.167 4.167 17 C -0.075 4.075 18 C -0.150 4.150 19 C -0.081 4.081 20 C -0.151 4.151 21 C -0.007 4.007 22 O -0.100 6.100 23 C -0.216 4.216 24 C -0.225 4.225 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.210 0.790 29 H 0.178 0.822 30 H 0.191 0.809 31 H 0.194 0.806 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.739 2.588 18.397 18.659 hybrid contribution 0.074 0.511 -0.822 0.971 sum 1.813 3.099 17.575 17.938 Atomic orbital electron populations 1.69938 1.07139 1.27324 1.49994 1.25541 0.95420 1.01847 0.93827 0.85705 0.79640 0.80155 0.77477 1.18896 1.19950 1.21412 1.20671 0.95167 0.90714 1.47169 0.92601 1.19009 0.96110 0.90143 0.94363 1.22709 0.97969 0.94490 0.79925 1.86682 1.43138 1.72502 1.22157 1.19761 0.82794 0.76840 0.82595 1.90824 1.21072 1.46156 1.82827 1.20726 0.85417 1.06273 0.96054 1.23092 1.00934 0.96885 0.89712 1.20138 0.92838 1.05455 0.98275 1.20806 1.01594 0.94729 0.90368 1.21343 0.92113 0.99529 1.02034 1.21573 0.98994 0.95690 0.91814 1.20458 0.97510 1.00857 0.96306 1.20557 0.98172 0.98184 0.83755 1.84125 1.31060 1.60687 1.34174 1.22969 0.99717 1.04340 0.94552 1.23003 0.96858 1.00388 1.02244 0.92903 0.93540 0.89665 0.78994 0.82199 0.80879 0.80574 0.83854 0.89673 0.89788 0.89667 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.53 10.95 21.45 0.23 -52.29 16 2 C 0.03 1.92 5.13 84.66 0.43 2.35 16 3 Si 0.94 45.05 29.57 68.60 2.03 47.08 16 4 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.50 -28.14 8.75 25.60 0.22 -27.92 16 8 H 0.06 3.13 7.86 -2.91 -0.02 3.11 16 9 C 0.00 0.21 2.10 -52.93 -0.11 0.10 16 10 C 0.12 6.28 4.66 71.98 0.34 6.61 16 11 O -0.33 -17.22 9.88 -55.99 -0.55 -17.77 16 12 C 0.53 24.99 7.93 70.06 0.56 25.55 16 13 O -0.52 -24.45 16.55 19.56 0.32 -24.13 16 14 C -0.04 -1.50 7.10 23.97 0.17 -1.33 16 15 C -0.09 -2.75 10.81 23.80 0.26 -2.50 16 16 C -0.17 -4.60 6.38 -20.23 -0.13 -4.73 16 17 C -0.06 -1.03 10.06 22.25 0.22 -0.81 16 18 C -0.13 -1.75 9.98 22.04 0.22 -1.53 16 19 C -0.06 -0.93 10.01 22.31 0.22 -0.71 16 20 C -0.13 -3.09 10.07 22.35 0.23 -2.87 16 21 C 0.04 1.31 7.41 23.07 0.17 1.48 16 22 O -0.20 -8.08 10.60 -12.56 -0.13 -8.22 16 23 C -0.18 -7.87 9.96 30.62 0.30 -7.57 16 24 C -0.19 -8.07 9.92 30.62 0.30 -7.77 16 25 H 0.26 14.54 8.32 -92.70 -0.77 13.77 16 26 H 0.05 2.20 7.95 -2.39 -0.02 2.18 16 27 H 0.09 4.84 6.12 -2.39 -0.01 4.82 16 28 H 0.19 5.00 8.06 -2.91 -0.02 4.98 16 29 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 30 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 31 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.08 3.43 8.14 -2.38 -0.02 3.41 16 34 H 0.08 3.70 8.14 -2.39 -0.02 3.68 16 35 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -70.16 322.23 6.41 -63.76 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.10 Total: 13.20 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 3.41 Total: -21.63 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.23 Total: -52.29 kcal Atomic # 8 Polarization: -49.75 SS G_CDS: -0.36 Total: -50.12 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -70.16 6.41 -63.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174745308.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.651 kcal (2) G-P(sol) polarization free energy of solvation -70.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds