Wall clock time and date at job start Tue Mar 31 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99912 * 2 1 4 4 H 1.48500 * 109.47219 * 270.00105 * 3 2 1 5 5 H 1.48503 * 109.47028 * 30.00568 * 3 2 1 6 6 H 1.48503 * 109.46651 * 150.00266 * 3 2 1 7 7 C 1.39933 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99755 * 174.48136 * 7 2 1 9 9 C 1.41440 * 120.00065 * 354.47503 * 7 2 1 10 10 C 1.40786 * 120.17369 * 145.72952 * 9 7 2 11 11 C 1.37712 * 120.04112 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41267 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35477 * 359.97438 * 12 11 10 14 14 C 1.47861 * 120.02582 * 180.02562 * 13 12 11 15 15 O 1.21561 * 120.00174 * 180.02562 * 14 13 12 16 16 N 1.34781 * 119.99665 * 359.97438 * 14 13 12 17 17 C 1.39988 * 119.99991 * 185.63810 * 16 14 13 18 18 C 1.39347 * 120.45360 * 34.44747 * 17 16 14 19 19 C 1.38411 * 118.38823 * 179.97438 * 18 17 16 20 20 C 1.38582 * 119.21052 * 0.02562 * 19 18 17 21 21 F 1.35109 * 119.56956 * 180.02562 * 20 19 18 22 22 N 1.32008 * 120.85963 * 359.97438 * 20 19 18 23 23 C 1.31893 * 121.75785 * 359.77439 * 22 20 19 24 24 C 1.39043 * 119.95320 * 0.02562 * 13 12 11 25 25 H 0.97004 * 119.99612 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.97988 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.79264 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.81551 * 180.02562 * 12 11 10 29 29 H 0.96997 * 120.00296 * 5.64806 * 16 14 13 30 30 H 1.07999 * 120.80751 * 359.97438 * 18 17 16 31 31 H 1.07998 * 120.39437 * 179.97438 * 19 18 17 32 32 H 1.08008 * 119.65063 * 180.26322 * 23 22 20 33 33 H 1.07997 * 120.20569 * 180.24817 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0842 -1.2140 -0.0905 9 6 1.3056 -2.4340 0.1168 10 6 1.7661 -3.5822 -0.5553 11 6 1.0799 -4.7705 -0.4395 12 6 -0.0637 -4.8464 0.3360 13 6 -0.5357 -3.7163 1.0119 14 6 -1.7581 -3.8057 1.8390 15 8 -2.1681 -2.8233 2.4258 16 7 -2.4182 -4.9763 1.9414 17 6 -3.6378 -5.0345 2.6262 18 6 -4.5219 -3.9582 2.5869 19 6 -5.7160 -4.0619 3.2791 20 6 -5.9909 -5.2233 3.9834 21 9 -7.1545 -5.3325 4.6612 22 7 -5.1309 -6.2247 3.9999 23 6 -3.9851 -6.1666 3.3493 24 6 0.1455 -2.5088 0.9055 25 1 -0.4850 0.8401 0.0004 26 1 2.6581 -3.5310 -1.1620 27 1 1.4370 -5.6490 -0.9565 28 1 -0.5941 -5.7833 0.4203 29 1 -2.0483 -5.7785 1.5407 30 1 -4.2813 -3.0648 2.0299 31 1 -6.4248 -3.2470 3.2711 32 1 -3.3084 -7.0078 3.3826 33 1 -0.2131 -1.6348 1.4289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178593356.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:15 Heat of formation + Delta-G solvation = -20.867839 kcal Electronic energy + Delta-G solvation = -20818.930211 eV Core-core repulsion = 17337.917572 eV Total energy + Delta-G solvation = -3481.012638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.99368 -40.72009 -39.06858 -37.23802 -34.86083 -33.76911 -32.47201 -30.77348 -29.64059 -29.12207 -25.46136 -24.22272 -23.97190 -22.14248 -21.09782 -19.89519 -18.37462 -18.02620 -17.45620 -17.03245 -16.13622 -15.93294 -15.28593 -14.85565 -14.76045 -14.52048 -14.18578 -13.91902 -13.39415 -13.18685 -13.15292 -13.04106 -12.68878 -12.65900 -11.82659 -11.26611 -11.20780 -10.93645 -10.73281 -10.60442 -10.25759 -9.99348 -9.83740 -9.82500 -9.38512 -9.23900 -8.26247 -7.81268 -7.58381 -6.81940 -4.56075 0.76708 1.04527 1.95128 2.68121 3.03353 3.03794 3.07608 3.10754 3.38955 3.58071 3.69730 3.87629 4.43920 4.54733 4.72898 4.75967 5.08504 5.38864 5.40129 5.46399 5.82842 5.90908 5.96434 6.06410 6.25929 6.53372 6.68019 6.78953 6.84778 7.10508 7.19703 7.42045 7.50681 7.52171 7.66018 7.84175 8.02171 8.36349 8.48355 8.67816 8.73071 10.13695 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.003754 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.155258 B = 7457.907478 C = 8471.685639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.071 3.929 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.196 4.196 11 C -0.102 4.102 12 C -0.207 4.207 13 C -0.136 4.136 14 C 0.567 3.433 15 O -0.522 6.522 16 N -0.673 5.673 17 C 0.108 3.892 18 C -0.055 4.055 19 C -0.168 4.168 20 C 0.275 3.725 21 F -0.118 7.118 22 N -0.494 5.494 23 C 0.103 3.897 24 C -0.074 4.074 25 H 0.283 0.717 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.415 0.585 30 H 0.158 0.842 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 -7.384 2.263 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.216 4.216 11 C -0.120 4.120 12 C -0.227 4.227 13 C -0.140 4.140 14 C 0.359 3.641 15 O -0.398 6.398 16 N -0.320 5.320 17 C 0.010 3.990 18 C -0.083 4.083 19 C -0.189 4.189 20 C 0.120 3.880 21 F -0.097 7.097 22 N -0.208 5.208 23 C -0.057 4.057 24 C -0.094 4.094 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.253 0.747 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.186 0.814 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.847 -7.206 3.131 10.421 hybrid contribution 0.447 1.012 -0.624 1.270 sum -6.400 -6.194 2.507 9.252 Atomic orbital electron populations 1.69720 1.07359 1.29582 1.35939 1.25911 0.94941 1.01385 0.92367 0.86196 0.80300 0.80366 0.79200 1.19448 1.20060 1.18513 1.19553 0.95085 0.89897 1.44934 0.90090 1.17623 0.91462 0.92597 0.88664 1.21291 1.02488 0.94097 1.03712 1.20483 0.95660 0.96889 0.98983 1.20393 1.00337 0.95893 1.06077 1.19333 0.95737 0.96522 1.02367 1.19095 0.83871 0.81293 0.79806 1.90734 1.68030 1.35853 1.45196 1.43630 1.19723 1.13524 1.55142 1.18854 0.87663 0.96506 0.95997 1.21626 0.90294 0.99468 0.96892 1.21753 0.99252 0.98119 0.99804 1.18054 0.83784 0.91563 0.94594 1.91599 1.43842 1.96297 1.77944 1.66906 1.03635 1.29619 1.20668 1.22278 0.92881 0.97890 0.92645 1.21680 0.95677 0.94960 0.97048 0.90558 0.88237 0.88508 0.88966 0.74698 0.82450 0.83248 0.81423 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.35 10.97 55.55 0.61 -19.74 16 2 C 0.07 1.73 5.31 -17.34 -0.09 1.64 16 3 Si 0.91 18.22 29.56 -169.99 -5.03 13.19 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.65 9.04 -37.73 -0.34 -11.99 16 8 H 0.08 1.93 7.85 -52.48 -0.41 1.52 16 9 C 0.10 2.45 5.50 -106.87 -0.59 1.87 16 10 C -0.20 -4.31 9.78 -38.81 -0.38 -4.69 16 11 C -0.10 -1.97 10.01 -39.72 -0.40 -2.37 16 12 C -0.21 -3.86 9.54 -38.92 -0.37 -4.24 16 13 C -0.14 -2.90 5.87 -105.04 -0.62 -3.51 16 14 C 0.57 10.99 7.52 -12.32 -0.09 10.89 16 15 O -0.52 -11.60 14.16 5.31 0.08 -11.53 16 16 N -0.67 -9.83 5.29 -10.60 -0.06 -9.88 16 17 C 0.11 1.51 6.27 -83.53 -0.52 0.99 16 18 C -0.05 -0.79 8.76 -39.10 -0.34 -1.13 16 19 C -0.17 -2.11 10.08 -39.39 -0.40 -2.50 16 20 C 0.27 3.74 8.41 -17.35 -0.15 3.60 16 21 F -0.12 -1.57 17.29 2.25 0.04 -1.53 16 22 N -0.49 -6.92 10.37 -13.44 -0.14 -7.06 16 23 C 0.10 1.27 11.12 -17.34 -0.19 1.08 16 24 C -0.07 -1.82 8.16 -38.44 -0.31 -2.13 16 25 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 26 H 0.10 2.04 8.06 -52.48 -0.42 1.61 16 27 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 28 H 0.09 1.35 6.40 -52.49 -0.34 1.01 16 29 H 0.41 4.82 6.86 -40.82 -0.28 4.54 16 30 H 0.16 2.47 6.61 -52.49 -0.35 2.12 16 31 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 32 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16 33 H 0.13 3.62 6.06 -52.49 -0.32 3.30 16 LS Contribution 298.64 15.07 4.50 4.50 Total: -1.00 -28.14 298.64 -7.31 -35.45 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -2.52 Total: 9.10 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -4.79 Total: -12.50 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.41 Total: -36.68 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.53 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.14 -7.31 -35.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178593356.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.582 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds