Wall clock time and date at job start Tue Mar 31 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99912 * 2 1 4 4 H 1.48500 * 109.47219 * 270.00105 * 3 2 1 5 5 H 1.48503 * 109.47028 * 30.00568 * 3 2 1 6 6 H 1.48503 * 109.46651 * 150.00266 * 3 2 1 7 7 C 1.39933 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99755 * 174.48136 * 7 2 1 9 9 C 1.41440 * 120.00065 * 354.47503 * 7 2 1 10 10 C 1.40786 * 120.17369 * 145.72952 * 9 7 2 11 11 C 1.37712 * 120.04112 * 180.02562 * 10 9 7 12 12 C 1.38374 * 120.41267 * 359.97438 * 11 10 9 13 13 C 1.39884 * 120.35477 * 359.97438 * 12 11 10 14 14 C 1.47861 * 120.02582 * 180.02562 * 13 12 11 15 15 O 1.21561 * 120.00174 * 180.02562 * 14 13 12 16 16 N 1.34781 * 119.99665 * 359.97438 * 14 13 12 17 17 C 1.39988 * 119.99991 * 185.63810 * 16 14 13 18 18 C 1.39347 * 120.45360 * 34.44747 * 17 16 14 19 19 C 1.38411 * 118.38823 * 179.97438 * 18 17 16 20 20 C 1.38582 * 119.21052 * 0.02562 * 19 18 17 21 21 F 1.35109 * 119.56956 * 180.02562 * 20 19 18 22 22 N 1.32008 * 120.85963 * 359.97438 * 20 19 18 23 23 C 1.31893 * 121.75785 * 359.77439 * 22 20 19 24 24 C 1.39043 * 119.95320 * 0.02562 * 13 12 11 25 25 H 0.97004 * 119.99612 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.97988 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.79264 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.81551 * 180.02562 * 12 11 10 29 29 H 0.96997 * 120.00296 * 5.64806 * 16 14 13 30 30 H 1.07999 * 120.80751 * 359.97438 * 18 17 16 31 31 H 1.07998 * 120.39437 * 179.97438 * 19 18 17 32 32 H 1.08008 * 119.65063 * 180.26322 * 23 22 20 33 33 H 1.07997 * 120.20569 * 180.24817 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0842 -1.2140 -0.0905 9 6 1.3056 -2.4340 0.1168 10 6 1.7661 -3.5822 -0.5553 11 6 1.0799 -4.7705 -0.4395 12 6 -0.0637 -4.8464 0.3360 13 6 -0.5357 -3.7163 1.0119 14 6 -1.7581 -3.8057 1.8390 15 8 -2.1681 -2.8233 2.4258 16 7 -2.4182 -4.9763 1.9414 17 6 -3.6378 -5.0345 2.6262 18 6 -4.5219 -3.9582 2.5869 19 6 -5.7160 -4.0619 3.2791 20 6 -5.9909 -5.2233 3.9834 21 9 -7.1545 -5.3325 4.6612 22 7 -5.1309 -6.2247 3.9999 23 6 -3.9851 -6.1666 3.3493 24 6 0.1455 -2.5088 0.9055 25 1 -0.4850 0.8401 0.0004 26 1 2.6581 -3.5310 -1.1620 27 1 1.4370 -5.6490 -0.9565 28 1 -0.5941 -5.7833 0.4203 29 1 -2.0483 -5.7785 1.5407 30 1 -4.2813 -3.0648 2.0299 31 1 -6.4248 -3.2470 3.2711 32 1 -3.3084 -7.0078 3.3826 33 1 -0.2131 -1.6348 1.4289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178593356.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:14 Heat of formation + Delta-G solvation = -37.639369 kcal Electronic energy + Delta-G solvation = -20819.657479 eV Core-core repulsion = 17337.917572 eV Total energy + Delta-G solvation = -3481.739907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.05421 -41.95607 -40.42700 -38.86885 -36.22880 -35.49043 -33.56739 -32.31613 -31.32925 -30.40944 -27.21752 -25.47053 -25.14222 -23.51413 -22.77468 -21.37351 -19.80526 -19.14616 -18.87678 -18.21921 -17.57738 -17.13184 -16.91974 -16.46445 -16.05852 -15.84246 -15.52267 -15.10999 -14.97301 -14.60327 -14.34874 -14.31086 -14.21485 -13.87180 -13.54633 -12.91769 -12.81628 -12.56137 -12.21581 -12.02733 -11.94502 -11.51260 -11.23058 -11.11325 -11.00478 -10.60269 -9.61625 -9.31116 -9.29290 -8.58437 -6.42039 -0.33969 -0.02668 0.35267 1.00452 1.38296 1.45607 1.51718 1.84048 1.94743 2.21689 2.50492 2.53623 2.81553 3.42838 3.62922 3.65796 3.71176 3.88779 4.16198 4.40206 4.48496 4.56067 4.81030 4.83903 4.88920 5.08196 5.11738 5.14984 5.31589 5.49725 5.56750 5.81240 5.87198 6.04426 6.25527 6.35571 6.46558 6.59600 6.91085 6.92736 7.05892 8.38680 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.003754 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.155258 B = 7457.907478 C = 8471.685639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.028 3.972 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.065 3.935 10 C -0.200 4.200 11 C -0.102 4.102 12 C -0.179 4.179 13 C -0.144 4.144 14 C 0.568 3.432 15 O -0.560 6.560 16 N -0.649 5.649 17 C 0.092 3.908 18 C -0.068 4.068 19 C -0.160 4.160 20 C 0.270 3.730 21 F -0.117 7.117 22 N -0.509 5.509 23 C 0.122 3.878 24 C -0.110 4.110 25 H 0.283 0.717 26 H 0.110 0.890 27 H 0.143 0.857 28 H 0.146 0.854 29 H 0.432 0.568 30 H 0.138 0.862 31 H 0.172 0.828 32 H 0.207 0.793 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -10.172 2.052 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.534 4.534 8 H 0.099 0.901 9 C 0.063 3.937 10 C -0.220 4.220 11 C -0.120 4.120 12 C -0.199 4.199 13 C -0.148 4.148 14 C 0.360 3.640 15 O -0.439 6.439 16 N -0.297 5.297 17 C -0.006 4.006 18 C -0.096 4.096 19 C -0.182 4.182 20 C 0.117 3.883 21 F -0.096 7.096 22 N -0.223 5.223 23 C -0.037 4.037 24 C -0.131 4.131 25 H 0.094 0.906 26 H 0.128 0.872 27 H 0.161 0.839 28 H 0.164 0.836 29 H 0.273 0.727 30 H 0.156 0.844 31 H 0.190 0.810 32 H 0.223 0.777 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.012 -10.058 2.916 12.603 hybrid contribution 0.388 1.606 -0.531 1.736 sum -6.624 -8.451 2.385 10.999 Atomic orbital electron populations 1.69837 1.08822 1.30132 1.38157 1.26727 0.95583 1.04519 0.91624 0.85188 0.78916 0.76100 0.79432 1.18559 1.19952 1.18006 1.19807 0.95262 0.91103 1.47258 0.90116 1.17936 0.92213 0.93786 0.89759 1.21591 1.02921 0.94342 1.03099 1.20990 0.95143 0.97282 0.98544 1.20994 0.99436 0.96716 1.02736 1.19596 0.96168 0.96299 1.02688 1.18851 0.83610 0.82151 0.79410 1.90723 1.68836 1.37621 1.46685 1.43192 1.19481 1.12464 1.54546 1.18973 0.87228 0.97278 0.97106 1.21597 0.91393 0.99203 0.97431 1.21872 0.98970 0.98534 0.98780 1.18209 0.83819 0.91797 0.94521 1.91601 1.43825 1.96298 1.77895 1.66998 1.04207 1.29865 1.21255 1.22760 0.92466 0.97922 0.90577 1.21442 0.97334 0.95494 0.98791 0.90641 0.87217 0.83944 0.83604 0.72673 0.84390 0.81021 0.77687 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.64 10.97 21.82 0.24 -45.40 16 2 C 0.03 1.42 5.31 85.25 0.45 1.88 16 3 Si 0.98 38.94 29.56 68.60 2.03 40.97 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.50 -26.51 9.04 23.47 0.21 -26.29 16 8 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 9 C 0.07 3.34 5.50 -21.32 -0.12 3.22 16 10 C -0.20 -8.62 9.78 22.77 0.22 -8.40 16 11 C -0.10 -3.56 10.01 22.18 0.22 -3.34 16 12 C -0.18 -6.03 9.54 22.70 0.22 -5.81 16 13 C -0.14 -6.06 5.87 -20.14 -0.12 -6.18 16 14 C 0.57 21.76 7.52 86.79 0.65 22.41 16 15 O -0.56 -25.73 14.16 -3.91 -0.06 -25.78 16 16 N -0.65 -17.26 5.29 -305.72 -1.62 -18.87 16 17 C 0.09 2.36 6.27 38.23 0.24 2.60 16 18 C -0.07 -1.92 8.76 22.58 0.20 -1.72 16 19 C -0.16 -3.81 10.08 22.39 0.23 -3.59 16 20 C 0.27 6.84 8.41 84.75 0.71 7.55 16 21 F -0.12 -2.92 17.29 44.97 0.78 -2.15 16 22 N -0.51 -12.88 10.37 -196.43 -2.04 -14.91 16 23 C 0.12 2.62 11.12 84.80 0.94 3.56 16 24 C -0.11 -5.68 8.16 23.01 0.19 -5.49 16 25 H 0.28 14.23 8.30 -92.71 -0.77 13.47 16 26 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 27 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 28 H 0.15 3.31 6.40 -2.91 -0.02 3.29 16 29 H 0.43 8.05 6.86 -92.71 -0.64 7.42 16 30 H 0.14 4.46 6.61 -2.91 -0.02 4.44 16 31 H 0.17 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.10 5.68 6.06 -2.91 -0.02 5.66 16 Total: -1.00 -65.88 298.64 4.13 -61.75 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.54 Total: 24.00 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 4.25 Total: -19.61 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -3.42 Total: -79.19 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.06 Total: -25.78 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -65.88 4.13 -61.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178593356.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.112 kcal (2) G-P(sol) polarization free energy of solvation -65.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds