Wall clock time and date at job start Tue Mar 31 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48506 * 109.47241 * 239.99976 * 3 2 1 5 5 H 1.48491 * 109.47593 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46837 * 120.00520 * 3 2 1 7 7 C 1.39937 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99793 * 175.27572 * 7 2 1 9 9 C 1.41434 * 119.99902 * 355.27197 * 7 2 1 10 10 C 1.40793 * 120.17703 * 214.85847 * 9 7 2 11 11 C 1.37713 * 120.04296 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41347 * 359.70028 * 11 10 9 13 13 C 1.39887 * 120.35832 * 0.55386 * 12 11 10 14 14 C 1.47851 * 120.02742 * 179.74153 * 13 12 11 15 15 O 1.21560 * 119.99770 * 179.72143 * 14 13 12 16 16 N 1.34773 * 119.99972 * 359.72960 * 14 13 12 17 17 C 1.39579 * 119.99791 * 185.66511 * 16 14 13 18 18 C 1.39360 * 120.86972 * 24.49912 * 17 16 14 19 19 C 1.37966 * 119.09953 * 179.97438 * 18 17 16 20 20 N 1.31955 * 120.88809 * 359.97438 * 19 18 17 21 21 C 1.31976 * 121.91206 * 359.97438 * 20 19 18 22 22 C 1.38152 * 120.80338 * 0.02562 * 21 20 19 23 23 F 1.35100 * 120.48297 * 179.97438 * 22 21 20 24 24 C 1.39054 * 119.94470 * 359.46923 * 13 12 11 25 25 H 0.97008 * 119.99694 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.97316 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.78860 * 180.02562 * 11 10 9 28 28 H 1.08008 * 119.81859 * 180.30077 * 12 11 10 29 29 H 0.96996 * 119.99729 * 5.66712 * 16 14 13 30 30 H 1.08001 * 120.44330 * 359.97438 * 18 17 16 31 31 H 1.08001 * 119.55589 * 179.71988 * 19 18 17 32 32 H 1.08001 * 119.59591 * 179.97438 * 21 20 19 33 33 H 1.07997 * 120.20422 * 180.22504 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0852 -1.2135 -0.0776 9 6 1.3043 -2.4347 0.0999 10 6 1.8653 -3.5185 0.8020 11 6 1.1781 -4.7080 0.8976 12 6 -0.0679 -4.8461 0.3120 13 6 -0.6390 -3.7821 -0.3942 14 6 -1.9684 -3.9396 -1.0220 15 8 -2.4664 -3.0130 -1.6312 16 7 -2.6280 -5.1103 -0.9186 17 6 -3.8265 -5.2993 -1.6086 18 6 -4.1131 -4.5657 -2.7583 19 6 -5.3086 -4.7823 -3.4119 20 7 -6.1751 -5.6703 -2.9625 21 6 -5.9418 -6.3861 -1.8785 22 6 -4.7684 -6.2295 -1.1663 23 9 -4.5365 -6.9653 -0.0572 24 6 0.0420 -2.5744 -0.5004 25 1 -0.4850 0.8401 0.0004 26 1 2.8353 -3.4167 1.2659 27 1 1.6121 -5.5365 1.4376 28 1 -0.6006 -5.7818 0.3970 29 1 -2.2698 -5.8215 -0.3648 30 1 -3.4088 -3.8374 -3.1325 31 1 -5.5402 -4.2146 -4.3010 32 1 -6.6775 -7.1023 -1.5437 33 1 -0.3966 -1.7491 -1.0415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179091300.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:28 Heat of formation + Delta-G solvation = -22.539571 kcal Electronic energy + Delta-G solvation = -21100.601428 eV Core-core repulsion = 17619.516297 eV Total energy + Delta-G solvation = -3481.085130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.00992 -40.64241 -39.14189 -37.28999 -35.08797 -33.78845 -31.42839 -30.83780 -29.75836 -29.55547 -25.51331 -24.46258 -23.50936 -22.24410 -21.08006 -19.95726 -18.54190 -17.76546 -17.43714 -16.89594 -16.11889 -15.78847 -15.41137 -14.97601 -14.76762 -14.63592 -14.11093 -14.00725 -13.54733 -13.36914 -13.32687 -12.81420 -12.70098 -12.24786 -11.84965 -11.25817 -11.22897 -11.05629 -10.87715 -10.58177 -10.29229 -9.89605 -9.89071 -9.38221 -9.25711 -9.02818 -8.50257 -7.83731 -7.55953 -6.76376 -4.58094 0.86077 1.01652 1.95891 2.69626 3.02822 3.03496 3.04475 3.06686 3.44562 3.72451 3.87776 3.93312 4.39754 4.54524 4.62262 4.77789 5.13430 5.38173 5.47349 5.53711 5.70910 5.87570 5.98603 6.06845 6.28233 6.52426 6.70120 6.77655 6.85735 7.12666 7.20366 7.38931 7.50648 7.66380 7.79299 7.84475 8.04016 8.37369 8.41336 8.68917 8.73655 10.14571 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.004107 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.828181 B = 6815.673075 C = 7735.328692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.080 0.920 9 C 0.093 3.907 10 C -0.193 4.193 11 C -0.104 4.104 12 C -0.205 4.205 13 C -0.140 4.140 14 C 0.568 3.432 15 O -0.513 6.513 16 N -0.669 5.669 17 C 0.181 3.819 18 C -0.164 4.164 19 C 0.109 3.891 20 N -0.483 5.483 21 C 0.094 3.906 22 C 0.000 4.000 23 F -0.132 7.132 24 C -0.075 4.075 25 H 0.284 0.716 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.417 0.583 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 -8.505 -2.621 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.148 4.148 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.098 0.902 9 C 0.091 3.909 10 C -0.212 4.212 11 C -0.122 4.122 12 C -0.225 4.225 13 C -0.143 4.143 14 C 0.361 3.639 15 O -0.389 6.389 16 N -0.314 5.314 17 C 0.075 3.925 18 C -0.187 4.187 19 C -0.047 4.047 20 N -0.194 5.194 21 C -0.065 4.065 22 C -0.024 4.024 23 F -0.110 7.110 24 C -0.095 4.095 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.255 0.745 30 H 0.184 0.816 31 H 0.183 0.817 32 H 0.184 0.816 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.310 -7.755 -3.442 11.199 hybrid contribution 1.348 0.284 1.222 1.841 sum -5.962 -7.471 -2.220 9.813 Atomic orbital electron populations 1.69694 1.07309 1.29561 1.36311 1.25942 0.94994 1.01470 0.92377 0.86180 0.79770 0.79815 0.79859 1.18879 1.20246 1.18986 1.19520 0.94914 0.89869 1.44989 0.90156 1.17653 0.91821 0.92447 0.88987 1.21325 1.01113 0.94886 1.03910 1.20474 0.94814 0.96947 0.99972 1.20427 0.97943 0.96964 1.07154 1.19365 0.92837 0.97347 1.04731 1.19128 0.85668 0.80081 0.78999 1.90689 1.67781 1.39070 1.41327 1.43629 1.20962 1.18418 1.48370 1.18283 0.86883 0.95164 0.92195 1.22484 1.00537 1.02139 0.93524 1.22744 0.89200 0.93834 0.98928 1.67729 1.32537 1.06695 1.12396 1.22668 0.93908 0.98561 0.91373 1.18569 0.96853 0.98475 0.88552 1.91488 1.94652 1.75194 1.49712 1.21978 0.95488 0.94372 0.97679 0.90504 0.88170 0.88455 0.89098 0.74478 0.81564 0.81715 0.81600 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 10.60 55.55 0.59 -20.03 16 2 C 0.07 1.68 5.42 -17.34 -0.09 1.59 16 3 Si 0.92 18.33 29.56 -169.99 -5.03 13.31 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.68 9.04 -37.73 -0.34 -12.02 16 8 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 9 C 0.09 2.34 5.55 -106.87 -0.59 1.75 16 10 C -0.19 -4.31 9.78 -38.81 -0.38 -4.69 16 11 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 12 C -0.20 -4.03 9.54 -38.92 -0.37 -4.41 16 13 C -0.14 -3.08 5.87 -105.04 -0.62 -3.70 16 14 C 0.57 11.57 7.60 -12.33 -0.09 11.48 16 15 O -0.51 -11.57 13.55 5.31 0.07 -11.50 16 16 N -0.67 -11.04 5.26 -10.50 -0.06 -11.10 16 17 C 0.18 2.80 6.48 -83.42 -0.54 2.26 16 18 C -0.16 -2.45 8.79 -39.26 -0.35 -2.79 16 19 C 0.11 1.38 11.17 -17.60 -0.20 1.19 16 20 N -0.48 -6.32 10.36 -13.28 -0.14 -6.46 16 21 C 0.09 1.13 11.16 -17.52 -0.20 0.94 16 22 C 0.00 0.01 7.35 -39.11 -0.29 -0.28 16 23 F -0.13 -1.75 16.93 2.25 0.04 -1.71 16 24 C -0.07 -1.89 8.22 -38.44 -0.32 -2.20 16 25 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 26 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.09 1.47 6.39 -52.48 -0.34 1.13 16 29 H 0.42 6.02 6.57 -40.82 -0.27 5.75 16 30 H 0.17 2.71 5.89 -52.49 -0.31 2.40 16 31 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.15 4.00 5.72 -52.49 -0.30 3.70 16 LS Contribution 296.51 15.07 4.47 4.47 Total: -1.00 -27.75 296.51 -7.27 -35.02 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -2.45 Total: 11.35 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -4.77 Total: -13.36 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.40 Total: -37.58 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.75 -7.27 -35.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179091300.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.479 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds