Wall clock time and date at job start Tue Mar 31 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48506 * 109.47241 * 239.99976 * 3 2 1 5 5 H 1.48491 * 109.47593 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46837 * 120.00520 * 3 2 1 7 7 C 1.39937 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99793 * 175.27572 * 7 2 1 9 9 C 1.41434 * 119.99902 * 355.27197 * 7 2 1 10 10 C 1.40793 * 120.17703 * 214.85847 * 9 7 2 11 11 C 1.37713 * 120.04296 * 180.02562 * 10 9 7 12 12 C 1.38367 * 120.41347 * 359.70028 * 11 10 9 13 13 C 1.39887 * 120.35832 * 0.55386 * 12 11 10 14 14 C 1.47851 * 120.02742 * 179.74153 * 13 12 11 15 15 O 1.21560 * 119.99770 * 179.72143 * 14 13 12 16 16 N 1.34773 * 119.99972 * 359.72960 * 14 13 12 17 17 C 1.39579 * 119.99791 * 185.66511 * 16 14 13 18 18 C 1.39360 * 120.86972 * 24.49912 * 17 16 14 19 19 C 1.37966 * 119.09953 * 179.97438 * 18 17 16 20 20 N 1.31955 * 120.88809 * 359.97438 * 19 18 17 21 21 C 1.31976 * 121.91206 * 359.97438 * 20 19 18 22 22 C 1.38152 * 120.80338 * 0.02562 * 21 20 19 23 23 F 1.35100 * 120.48297 * 179.97438 * 22 21 20 24 24 C 1.39054 * 119.94470 * 359.46923 * 13 12 11 25 25 H 0.97008 * 119.99694 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.97316 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.78860 * 180.02562 * 11 10 9 28 28 H 1.08008 * 119.81859 * 180.30077 * 12 11 10 29 29 H 0.96996 * 119.99729 * 5.66712 * 16 14 13 30 30 H 1.08001 * 120.44330 * 359.97438 * 18 17 16 31 31 H 1.08001 * 119.55589 * 179.71988 * 19 18 17 32 32 H 1.08001 * 119.59591 * 179.97438 * 21 20 19 33 33 H 1.07997 * 120.20422 * 180.22504 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0852 -1.2135 -0.0776 9 6 1.3043 -2.4347 0.0999 10 6 1.8653 -3.5185 0.8020 11 6 1.1781 -4.7080 0.8976 12 6 -0.0679 -4.8461 0.3120 13 6 -0.6390 -3.7821 -0.3942 14 6 -1.9684 -3.9396 -1.0220 15 8 -2.4664 -3.0130 -1.6312 16 7 -2.6280 -5.1103 -0.9186 17 6 -3.8265 -5.2993 -1.6086 18 6 -4.1131 -4.5657 -2.7583 19 6 -5.3086 -4.7823 -3.4119 20 7 -6.1751 -5.6703 -2.9625 21 6 -5.9418 -6.3861 -1.8785 22 6 -4.7684 -6.2295 -1.1663 23 9 -4.5365 -6.9653 -0.0572 24 6 0.0420 -2.5744 -0.5004 25 1 -0.4850 0.8401 0.0004 26 1 2.8353 -3.4167 1.2659 27 1 1.6121 -5.5365 1.4376 28 1 -0.6006 -5.7818 0.3970 29 1 -2.2698 -5.8215 -0.3648 30 1 -3.4088 -3.8374 -3.1325 31 1 -5.5402 -4.2146 -4.3010 32 1 -6.6775 -7.1023 -1.5437 33 1 -0.3966 -1.7491 -1.0415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179091300.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:27 Heat of formation + Delta-G solvation = -38.561931 kcal Electronic energy + Delta-G solvation = -21101.296209 eV Core-core repulsion = 17619.516297 eV Total energy + Delta-G solvation = -3481.779912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.06675 -41.96519 -40.47135 -38.96784 -36.51042 -35.55302 -32.85227 -31.95091 -31.39392 -31.13042 -27.29943 -25.82383 -24.64702 -23.64907 -22.80262 -21.49355 -19.97142 -19.24547 -18.53315 -18.21465 -17.58515 -17.11157 -16.85439 -16.47670 -16.28680 -16.03214 -15.52779 -15.20642 -15.07263 -14.70099 -14.47916 -14.39147 -14.34576 -13.62406 -13.31066 -12.91840 -12.80999 -12.61449 -12.37562 -12.22159 -11.99900 -11.60247 -11.31661 -11.10286 -10.58914 -10.14619 -9.80917 -9.50732 -9.33736 -8.55120 -6.47132 -0.29547 -0.10329 0.34767 0.97371 1.38154 1.46234 1.50674 1.68225 1.89099 2.21147 2.58618 2.78097 2.85616 3.43303 3.51187 3.57818 3.66497 3.83292 4.24425 4.32463 4.45924 4.48903 4.71409 4.82506 4.84238 5.03627 5.09877 5.11438 5.31610 5.45667 5.58042 5.75621 5.80979 6.02155 6.14649 6.26019 6.55395 6.75682 6.85739 6.89671 6.91287 8.36831 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.004107 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.828181 B = 6815.673075 C = 7735.328692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.025 3.975 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.500 4.500 8 H 0.083 0.917 9 C 0.061 3.939 10 C -0.195 4.195 11 C -0.102 4.102 12 C -0.184 4.184 13 C -0.148 4.148 14 C 0.569 3.431 15 O -0.545 6.545 16 N -0.655 5.655 17 C 0.156 3.844 18 C -0.179 4.179 19 C 0.118 3.882 20 N -0.487 5.487 21 C 0.105 3.895 22 C 0.004 3.996 23 F -0.128 7.128 24 C -0.111 4.111 25 H 0.283 0.717 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.427 0.573 30 H 0.146 0.854 31 H 0.194 0.806 32 H 0.203 0.797 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -10.807 -2.054 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.187 4.187 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.530 4.530 8 H 0.101 0.899 9 C 0.059 3.941 10 C -0.215 4.215 11 C -0.120 4.120 12 C -0.204 4.204 13 C -0.152 4.152 14 C 0.361 3.639 15 O -0.422 6.422 16 N -0.300 5.300 17 C 0.051 3.949 18 C -0.202 4.202 19 C -0.037 4.037 20 N -0.197 5.197 21 C -0.054 4.054 22 C -0.021 4.021 23 F -0.107 7.107 24 C -0.132 4.132 25 H 0.094 0.906 26 H 0.132 0.868 27 H 0.160 0.840 28 H 0.153 0.847 29 H 0.267 0.733 30 H 0.164 0.836 31 H 0.210 0.790 32 H 0.220 0.780 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.024 -10.116 -2.871 13.227 hybrid contribution 1.447 0.736 1.038 1.926 sum -6.578 -9.380 -1.833 11.602 Atomic orbital electron populations 1.69841 1.08869 1.30131 1.38251 1.26819 0.95638 1.04735 0.91523 0.85143 0.78401 0.75387 0.80132 1.18236 1.19925 1.18144 1.19806 0.95211 0.90925 1.47062 0.89890 1.17984 0.92370 0.93634 0.90135 1.21621 1.01737 0.95025 1.03104 1.20956 0.94512 0.97216 0.99331 1.20946 0.97752 0.97541 1.04157 1.19612 0.93622 0.97085 1.04853 1.18902 0.85402 0.80875 0.78693 1.90678 1.68403 1.40496 1.42665 1.43264 1.21217 1.17272 1.48241 1.18516 0.86965 0.96597 0.92808 1.22427 1.01290 1.02266 0.94209 1.23130 0.87969 0.93401 0.99221 1.67864 1.32332 1.06764 1.12760 1.23256 0.93700 0.98134 0.90286 1.18599 0.96779 0.97930 0.88752 1.91499 1.94656 1.74977 1.49530 1.21754 0.96681 0.95113 0.99634 0.90610 0.86816 0.83991 0.84700 0.73282 0.83603 0.78961 0.78009 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.05 10.60 21.83 0.23 -45.82 16 2 C 0.02 1.27 5.42 85.25 0.46 1.74 16 3 Si 0.99 38.85 29.56 68.60 2.03 40.88 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.50 -26.37 9.04 23.47 0.21 -26.15 16 8 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 9 C 0.06 3.17 5.55 -21.32 -0.12 3.05 16 10 C -0.20 -8.62 9.78 22.77 0.22 -8.40 16 11 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 12 C -0.18 -6.82 9.54 22.70 0.22 -6.60 16 13 C -0.15 -6.63 5.87 -20.14 -0.12 -6.75 16 14 C 0.57 23.56 7.60 86.79 0.66 24.22 16 15 O -0.54 -25.79 13.55 -3.90 -0.05 -25.84 16 16 N -0.65 -20.96 5.26 -305.42 -1.61 -22.56 16 17 C 0.16 4.66 6.48 38.50 0.25 4.91 16 18 C -0.18 -5.30 8.79 22.48 0.20 -5.10 16 19 C 0.12 2.81 11.17 84.61 0.95 3.75 16 20 N -0.49 -11.37 10.36 -195.94 -2.03 -13.40 16 21 C 0.10 2.19 11.16 84.65 0.94 3.13 16 22 C 0.00 0.10 7.35 22.57 0.17 0.26 16 23 F -0.13 -3.01 16.93 44.97 0.76 -2.25 16 24 C -0.11 -5.89 8.22 23.01 0.19 -5.70 16 25 H 0.28 14.38 8.30 -92.70 -0.77 13.62 16 26 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 27 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 28 H 0.14 3.76 6.39 -2.91 -0.02 3.74 16 29 H 0.43 11.31 6.57 -92.71 -0.61 10.70 16 30 H 0.15 4.97 5.89 -2.91 -0.02 4.95 16 31 H 0.19 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.11 6.71 5.72 -2.91 -0.02 6.70 16 Total: -1.00 -64.00 296.51 4.35 -59.64 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 0.57 Total: 30.56 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 4.45 Total: -21.20 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -3.41 Total: -81.78 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.05 Total: -25.84 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.76 Total: -2.25 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -64.00 4.35 -59.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179091300.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.078 kcal (2) G-P(sol) polarization free energy of solvation -63.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds