Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.46969 * 2 1 4 4 N 1.30398 * 125.98142 * 269.99731 * 3 2 1 5 5 N 1.39915 * 108.98710 * 179.97438 * 4 3 2 6 6 C 1.46490 * 125.74310 * 180.02562 * 5 4 3 7 7 C 1.34317 * 108.52065 * 0.02562 * 5 4 3 8 8 Cl 1.73603 * 126.32644 * 179.97438 * 7 5 4 9 9 C 1.38365 * 107.35374 * 359.97438 * 7 5 4 10 10 C 1.47148 * 126.44856 * 179.73992 * 9 7 5 11 11 O 1.21539 * 120.00096 * 90.02422 * 10 9 7 12 12 O 1.34771 * 119.99691 * 270.01875 * 10 9 7 13 13 C 1.45203 * 116.99837 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47143 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47398 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99983 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00586 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00112 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99511 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47362 * 89.99824 * 19 17 15 21 21 H 1.48505 * 109.46917 * 210.00030 * 19 17 15 22 22 H 1.48502 * 109.47213 * 329.99619 * 19 17 15 23 23 H 1.09003 * 109.47415 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47292 * 299.99797 * 1 2 3 25 25 H 1.08996 * 109.47510 * 60.00207 * 1 2 3 26 26 H 1.09004 * 109.47106 * 239.99683 * 2 1 3 27 27 H 1.08997 * 109.46790 * 119.99977 * 2 1 3 28 28 H 1.09001 * 109.47316 * 269.96432 * 6 5 4 29 29 H 1.09000 * 109.47145 * 29.96106 * 6 5 4 30 30 H 1.09001 * 109.47746 * 149.95982 * 6 5 4 31 31 H 1.08995 * 109.47341 * 300.00288 * 13 12 10 32 32 H 1.08999 * 109.47093 * 60.00588 * 13 12 10 33 33 H 1.09000 * 109.47396 * 300.00378 * 14 13 12 34 34 H 1.09004 * 109.47332 * 59.99965 * 14 13 12 35 35 H 0.97001 * 119.99833 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2877 2.1431 -1.0552 5 7 2.7331 3.4049 -0.6463 6 6 3.1210 4.5043 -1.5332 7 6 2.7451 3.4385 0.6964 8 17 3.2203 4.7825 1.6872 9 6 2.3089 2.2042 1.1442 10 6 2.1661 1.7835 2.5470 11 8 1.1151 1.9617 3.1309 12 8 3.2007 1.2007 3.1843 13 6 2.9885 0.8121 4.5672 14 6 4.2644 0.1728 5.1188 15 6 4.0441 -0.2311 6.5538 16 1 3.0896 -0.0495 7.0255 17 6 5.0613 -0.8315 7.2651 18 7 4.8691 -1.1834 8.5175 19 14 6.7128 -1.1437 6.4500 20 1 7.5970 0.0313 6.6570 21 1 7.3413 -2.3480 7.0501 22 1 6.5132 -1.3627 4.9949 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.1865 4.4353 -1.7528 29 1 2.5538 4.4395 -2.4617 30 1 2.9115 5.4562 -1.0452 31 1 2.7395 1.6935 5.1582 32 1 2.1696 0.0949 4.6216 33 1 4.5140 -0.7085 4.5279 34 1 5.0832 0.8903 5.0645 35 1 5.5847 -1.6062 9.0178 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179707257.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = -47.214071 kcal Electronic energy + Delta-G solvation = -20093.610025 eV Core-core repulsion = 16732.482383 eV Total energy + Delta-G solvation = -3361.127641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.78012 -41.12024 -38.29981 -37.69814 -35.94045 -35.37524 -33.09131 -32.73133 -31.56463 -28.34418 -27.15958 -25.15417 -23.93275 -22.61819 -22.01039 -21.02006 -19.42152 -18.80220 -18.05137 -17.52049 -17.22007 -16.96427 -16.29489 -16.13619 -15.40716 -14.97216 -14.94350 -14.59834 -14.40987 -14.14548 -13.75426 -13.67730 -13.30190 -13.17855 -12.97312 -12.84597 -12.61480 -12.51475 -12.47968 -12.27268 -11.88329 -11.80840 -11.60566 -11.50769 -11.44498 -10.79723 -10.49741 -9.99397 -8.32804 -6.40594 -0.01284 0.10080 0.89995 0.94851 1.28905 1.39085 1.40582 1.53395 1.84460 2.35585 3.02165 3.08042 3.51768 3.77475 3.95417 4.08793 4.18696 4.19765 4.28709 4.31085 4.36518 4.52653 4.57887 4.63282 4.95968 4.99648 5.01234 5.09018 5.29267 5.29612 5.37681 5.43157 5.52519 6.14994 6.17537 6.59622 6.65428 7.24361 8.83211 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.004253 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.798309 B = 6582.158185 C = 7149.873424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C 0.129 3.871 4 N -0.274 5.274 5 N -0.340 5.340 6 C 0.078 3.922 7 C 0.167 3.833 8 Cl 0.030 6.970 9 C -0.270 4.270 10 C 0.549 3.451 11 O -0.521 6.521 12 O -0.352 6.352 13 C 0.091 3.909 14 C -0.003 4.003 15 C -0.541 4.541 16 H 0.038 0.962 17 C 0.015 3.985 18 N -0.943 5.943 19 Si 0.950 3.050 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.245 1.245 23 H 0.087 0.913 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 10.731 -25.012 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 C -0.037 4.037 4 N -0.096 5.096 5 N -0.121 5.121 6 C -0.060 4.060 7 C 0.007 3.993 8 Cl 0.058 6.942 9 C -0.284 4.284 10 C 0.391 3.609 11 O -0.410 6.410 12 O -0.267 6.267 13 C 0.018 3.982 14 C -0.040 4.040 15 C -0.578 4.578 16 H 0.056 0.944 17 C -0.184 4.184 18 N -0.583 5.583 19 Si 0.773 3.227 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.168 1.168 23 H 0.106 0.894 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.130 0.870 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.877 11.000 -25.955 28.336 hybrid contribution 0.495 0.128 1.639 1.717 sum -2.382 11.128 -24.316 26.847 Atomic orbital electron populations 1.21699 0.92735 1.03643 1.01892 1.20278 0.97409 0.86418 1.05181 1.22594 0.96037 0.97857 0.87216 1.77236 1.21606 0.89888 1.20912 1.48758 1.48451 1.12633 1.02253 1.22613 1.03915 0.84918 0.94564 1.21885 1.00754 0.91307 0.85320 1.98458 1.89523 1.40961 1.65251 1.18926 1.22228 0.95721 0.91545 1.20213 0.81151 0.73518 0.85995 1.90822 1.29519 1.52510 1.68124 1.86637 1.40994 1.70158 1.28960 1.23072 1.00224 0.99027 0.75924 1.19465 0.93442 0.96729 0.94398 1.21097 1.00092 1.40583 0.96069 0.94383 1.25895 1.03158 0.94187 0.95118 1.70033 1.35202 1.42361 1.10696 0.85661 0.78500 0.78420 0.80166 1.18885 1.20508 1.16828 0.89407 0.94188 0.91579 0.86952 0.90081 0.87614 0.86243 0.87178 0.92153 0.91773 0.94545 0.94921 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.89 71.98 0.71 -2.08 16 2 C -0.05 -1.16 6.33 29.85 0.19 -0.97 16 3 C 0.13 3.39 6.52 43.55 0.28 3.68 16 4 N -0.27 -6.54 12.49 -46.63 -0.58 -7.12 16 5 N -0.34 -6.99 3.98 -357.37 -1.42 -8.41 16 6 C 0.08 0.72 11.28 127.77 1.44 2.16 16 7 C 0.17 4.23 7.54 84.34 0.64 4.87 16 8 Cl 0.03 0.67 28.56 -2.72 -0.08 0.59 16 9 C -0.27 -8.27 6.01 -20.13 -0.12 -8.39 16 10 C 0.55 20.26 7.34 70.16 0.51 20.78 16 11 O -0.52 -21.59 16.90 19.71 0.33 -21.26 16 12 O -0.35 -13.91 10.23 -56.82 -0.58 -14.50 16 13 C 0.09 3.96 5.42 71.98 0.39 4.35 16 14 C 0.00 -0.14 4.42 29.85 0.13 -0.01 16 15 C -0.54 -31.30 9.66 25.60 0.25 -31.05 16 16 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 17 C 0.01 0.85 5.47 84.66 0.46 1.31 16 18 N -0.94 -58.55 13.96 21.45 0.30 -58.26 16 19 Si 0.95 43.50 27.47 68.60 1.88 45.38 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 1.90 8.00 -2.39 -0.02 1.88 16 28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.67 7.77 -2.39 -0.02 0.65 16 31 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 33 H 0.04 1.70 7.20 -2.39 -0.02 1.68 16 34 H 0.03 1.51 7.57 -2.38 -0.02 1.49 16 35 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -72.16 326.19 5.78 -66.38 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: 1.04 Total: 2.53 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 4.89 Total: -5.35 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -1.71 Total: -73.79 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.25 Total: -35.75 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.08 Total: 0.59 kcal Total: -72.16 5.78 -66.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179707257.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.166 kcal (2) G-P(sol) polarization free energy of solvation -72.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds