Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86801 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47177 * 275.18754 * 3 2 1 5 5 H 1.48491 * 109.47271 * 35.19147 * 3 2 1 6 6 H 1.48510 * 109.47099 * 155.19133 * 3 2 1 7 7 C 1.39022 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99544 * 1.96661 * 7 2 1 9 9 N 1.36869 * 120.00027 * 181.95992 * 7 2 1 10 10 C 1.34771 * 119.99881 * 124.49201 * 9 7 2 11 11 O 1.21568 * 120.00333 * 183.27800 * 10 9 7 12 12 C 1.47861 * 119.99858 * 3.27553 * 10 9 7 13 13 C 1.39499 * 119.70232 * 174.12158 * 12 10 9 14 14 C 1.38417 * 119.09087 * 179.97438 * 13 12 10 15 15 C 1.38940 * 118.47315 * 0.02562 * 14 13 12 16 16 F 1.35107 * 120.33448 * 179.97438 * 15 14 13 17 17 C 1.38862 * 119.32180 * 0.02562 * 15 14 13 18 18 N 1.31465 * 120.86857 * 359.97438 * 17 15 14 19 19 C 1.39707 * 119.99962 * 304.49224 * 9 7 2 20 20 C 1.38987 * 120.07655 * 171.67177 * 19 9 7 21 21 C 1.38074 * 119.91349 * 179.74152 * 20 19 9 22 22 C 1.38308 * 120.08376 * 0.53244 * 21 20 19 23 23 C 1.38312 * 120.16004 * 359.72110 * 22 21 20 24 24 C 1.38078 * 120.08020 * 0.02562 * 23 22 21 25 25 H 0.96998 * 120.00151 * 5.00361 * 1 2 3 26 26 H 1.08003 * 120.45287 * 0.26413 * 13 12 10 27 27 H 1.07995 * 120.76474 * 180.02562 * 14 13 12 28 28 H 1.08003 * 119.56820 * 179.97438 * 17 15 14 29 29 H 1.07997 * 120.03723 * 0.02562 * 20 19 9 30 30 H 1.08002 * 119.95690 * 180.25473 * 21 20 19 31 31 H 1.08000 * 119.91960 * 179.70067 * 22 21 20 32 32 H 1.07994 * 119.95910 * 179.97438 * 23 22 21 33 33 H 1.07996 * 120.03842 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.3854 2.1097 -1.3943 5 1 1.5042 2.6185 0.8068 6 1 3.5957 1.4110 0.5875 7 6 2.0086 -1.2040 0.0005 8 1 1.4690 -2.1389 -0.0311 9 7 3.3767 -1.2043 0.0411 10 6 4.0219 -1.8813 1.0115 11 8 5.2345 -1.8331 1.0831 12 6 3.2548 -2.6828 1.9890 13 6 3.9319 -3.4783 2.9135 14 6 3.2013 -4.2229 3.8233 15 6 1.8146 -4.1482 3.7786 16 9 1.0646 -4.8596 4.6486 17 6 1.2076 -3.3358 2.8301 18 7 1.9273 -2.6396 1.9783 19 6 4.1043 -0.5028 -0.9235 20 6 5.4798 -0.3564 -0.7883 21 6 6.1963 0.3330 -1.7463 22 6 5.5454 0.8870 -2.8337 23 6 4.1760 0.7478 -2.9687 24 6 3.4535 0.0553 -2.0174 25 1 -0.4850 0.8368 -0.0733 26 1 5.0115 -3.5091 2.9224 27 1 3.6976 -4.8476 4.5511 28 1 0.1299 -3.2751 2.7916 29 1 5.9880 -0.7853 0.0626 30 1 7.2658 0.4436 -1.6441 31 1 6.1078 1.4298 -3.5790 32 1 3.6710 1.1821 -3.8189 33 1 2.3842 -0.0526 -2.1233 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182479251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = 14.336035 kcal Electronic energy + Delta-G solvation = -22116.510961 eV Core-core repulsion = 18637.024878 eV Total energy + Delta-G solvation = -3479.486084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.03496 -42.11463 -40.66145 -38.98505 -37.01857 -34.07012 -33.50969 -32.35826 -31.71968 -30.41917 -27.23467 -25.63211 -24.89850 -23.51951 -22.94037 -21.49133 -20.20041 -18.77010 -18.56515 -17.87332 -17.55639 -17.24878 -16.87407 -16.69088 -16.22672 -15.67105 -15.42458 -15.05729 -14.83190 -14.69051 -14.54425 -14.40641 -14.09019 -14.03290 -13.77851 -13.41596 -13.15332 -12.66300 -12.42106 -12.06695 -11.89867 -11.29587 -10.97012 -10.80149 -10.49198 -10.07848 -10.03583 -9.66434 -8.81630 -8.34533 -6.25729 -0.56522 0.16912 0.48730 0.54942 1.24227 1.30167 1.39197 1.74665 2.18292 2.28978 2.77440 2.82079 2.95092 3.13930 3.33393 3.69794 3.77230 3.89490 4.13365 4.19464 4.29585 4.46719 4.67061 4.72305 4.76078 4.76887 4.87099 4.91591 5.22634 5.51938 5.57983 5.58978 5.67524 5.72983 5.98803 6.24776 6.42867 6.78034 7.00440 7.22865 7.48985 8.66106 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.021306 B = 0.006468 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.879802 B = 4327.676265 C = 5302.048561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.055 3.945 3 Si 0.904 3.096 4 H -0.239 1.239 5 H -0.299 1.299 6 H -0.281 1.281 7 C -0.309 4.309 8 H 0.103 0.897 9 N -0.402 5.402 10 C 0.529 3.471 11 O -0.563 6.563 12 C 0.053 3.947 13 C -0.085 4.085 14 C -0.106 4.106 15 C 0.069 3.931 16 F -0.125 7.125 17 C 0.053 3.947 18 N -0.400 5.400 19 C 0.122 3.878 20 C -0.200 4.200 21 C -0.105 4.105 22 C -0.154 4.154 23 C -0.107 4.107 24 C -0.175 4.175 25 H 0.277 0.723 26 H 0.169 0.831 27 H 0.193 0.807 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 -4.071 2.796 8.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.151 4.151 3 Si 0.732 3.268 4 H -0.163 1.163 5 H -0.227 1.227 6 H -0.206 1.206 7 C -0.437 4.437 8 H 0.121 0.879 9 N -0.110 5.110 10 C 0.321 3.679 11 O -0.447 6.447 12 C -0.085 4.085 13 C -0.106 4.106 14 C -0.132 4.132 15 C 0.047 3.953 16 F -0.103 7.103 17 C -0.109 4.109 18 N -0.110 5.110 19 C 0.027 3.973 20 C -0.220 4.220 21 C -0.123 4.123 22 C -0.172 4.172 23 C -0.126 4.126 24 C -0.196 4.196 25 H 0.087 0.913 26 H 0.186 0.814 27 H 0.210 0.790 28 H 0.191 0.809 29 H 0.185 0.815 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.161 0.839 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.880 -3.458 2.316 8.041 hybrid contribution -0.227 0.246 0.738 0.811 sum 6.653 -3.212 3.055 7.994 Atomic orbital electron populations 1.69652 1.06677 1.28738 1.47448 1.25688 0.95445 0.99717 0.94216 0.86507 0.78633 0.81701 0.80007 1.16314 1.22656 1.20625 1.18937 0.77475 0.95483 1.51816 0.87933 1.41413 1.07246 1.41650 1.20700 1.18790 0.86296 0.81796 0.80970 1.90288 1.13737 1.66612 1.74105 1.21093 0.90500 0.99084 0.97818 1.22183 1.03013 0.93109 0.92253 1.21872 0.91128 1.00076 1.00090 1.19196 0.90634 0.94633 0.90884 1.91527 1.76120 1.75814 1.66868 1.23539 1.02312 0.93620 0.91385 1.68801 1.06522 1.15866 1.19762 1.18803 0.92184 0.95907 0.90407 1.22799 0.92798 1.02793 1.03597 1.21449 1.00829 0.96350 0.93673 1.21439 0.94121 1.02179 0.99487 1.21258 0.95015 0.97980 0.98331 1.21074 1.00986 1.02330 0.95190 0.91292 0.81351 0.78984 0.80869 0.81522 0.83245 0.82726 0.83853 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.39 13.95 21.67 0.30 -49.08 16 2 C 0.05 2.94 4.63 84.95 0.39 3.33 16 3 Si 0.90 44.44 23.90 68.60 1.64 46.08 16 4 H -0.24 -10.88 6.25 99.48 0.62 -10.26 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 6 H -0.28 -14.65 6.49 99.48 0.65 -14.00 16 7 C -0.31 -16.47 6.72 84.10 0.57 -15.90 16 8 H 0.10 5.87 6.79 -2.91 -0.02 5.85 16 9 N -0.40 -20.22 2.28 -461.92 -1.05 -21.27 16 10 C 0.53 24.85 7.56 86.79 0.66 25.51 16 11 O -0.56 -25.91 12.74 -3.93 -0.05 -25.96 16 12 C 0.05 2.15 6.66 41.85 0.28 2.43 16 13 C -0.08 -2.57 9.63 22.62 0.22 -2.35 16 14 C -0.11 -2.53 10.15 22.48 0.23 -2.30 16 15 C 0.07 1.89 7.36 22.59 0.17 2.06 16 16 F -0.12 -3.14 17.28 44.97 0.78 -2.36 16 17 C 0.05 1.82 11.17 84.90 0.95 2.77 16 18 N -0.40 -17.09 6.58 -184.78 -1.22 -18.30 16 19 C 0.12 5.78 4.14 38.24 0.16 5.93 16 20 C -0.20 -8.58 9.03 22.41 0.20 -8.38 16 21 C -0.10 -3.56 10.04 22.25 0.22 -3.34 16 22 C -0.15 -4.80 10.04 22.30 0.22 -4.57 16 23 C -0.11 -3.84 9.83 22.25 0.22 -3.62 16 24 C -0.18 -7.77 5.64 22.41 0.13 -7.65 16 25 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.17 4.46 7.65 -2.91 -0.02 4.44 16 27 H 0.19 2.84 8.06 -2.91 -0.02 2.81 16 28 H 0.17 5.47 8.06 -2.91 -0.02 5.45 16 29 H 0.17 7.45 4.57 -59.19 -0.27 7.18 16 30 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 33 H 0.12 5.74 5.72 -2.91 -0.02 5.73 16 Total: -1.00 -64.27 282.51 5.76 -58.51 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.76 Total: 18.48 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 4.61 Total: -6.09 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -1.97 Total: -88.66 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.64 Total: 46.08 kcal Total: -64.27 5.76 -58.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182479251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.847 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds