Wall clock time and date at job start Tue Mar 31 2020 05:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31342 * 1 3 3 Si 1.86800 * 119.99744 * 2 1 4 4 H 1.48500 * 109.46921 * 275.19384 * 3 2 1 5 5 H 1.48500 * 109.47063 * 35.19460 * 3 2 1 6 6 H 1.48500 * 109.46812 * 155.19681 * 3 2 1 7 7 C 1.39025 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00238 * 1.98757 * 7 2 1 9 9 N 1.36854 * 119.99792 * 181.99671 * 7 2 1 10 10 C 1.34775 * 120.00061 * 124.50024 * 9 7 2 11 11 O 1.21555 * 119.99968 * 183.29613 * 10 9 7 12 12 C 1.47957 * 120.00015 * 3.01577 * 10 9 7 13 13 C 1.39350 * 119.71762 * 174.47925 * 12 10 9 14 14 C 1.38612 * 119.11426 * 179.79534 * 13 12 10 15 15 C 1.38535 * 118.53210 * 0.47343 * 14 13 12 16 16 C 1.38890 * 119.35377 * 359.74434 * 15 14 13 17 17 F 1.35095 * 119.58027 * 180.02562 * 16 15 14 18 18 N 1.31711 * 120.84555 * 0.02848 * 16 15 14 19 19 C 1.39703 * 119.99433 * 304.49657 * 9 7 2 20 20 C 1.38983 * 120.07630 * 171.67982 * 19 9 7 21 21 C 1.38082 * 119.91972 * 179.71939 * 20 19 9 22 22 C 1.38306 * 120.07693 * 0.55347 * 21 20 19 23 23 C 1.38311 * 120.16061 * 359.72533 * 22 21 20 24 24 C 1.38078 * 120.08268 * 359.97438 * 23 22 21 25 25 H 0.97005 * 120.00587 * 4.99435 * 1 2 3 26 26 H 1.08001 * 120.43879 * 0.02562 * 13 12 10 27 27 H 1.08001 * 120.73065 * 180.19834 * 14 13 12 28 28 H 1.08001 * 120.32568 * 179.77191 * 15 14 13 29 29 H 1.07999 * 120.03918 * 359.97438 * 20 19 9 30 30 H 1.08003 * 119.95742 * 180.30229 * 21 20 19 31 31 H 1.08002 * 119.92009 * 179.69575 * 22 21 20 32 32 H 1.08005 * 119.95664 * 179.97438 * 23 22 21 33 33 H 1.08000 * 120.03734 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.3850 2.1098 -1.3943 5 1 1.5039 2.6185 0.8069 6 1 3.5955 1.4110 0.5873 7 6 2.0085 -1.2040 -0.0005 8 1 1.4690 -2.1390 -0.0334 9 7 3.3764 -1.2043 0.0408 10 6 4.0212 -1.8827 1.0106 11 8 5.2336 -1.8342 1.0831 12 6 3.2528 -2.6814 1.9908 13 6 3.9281 -3.4718 2.9188 14 6 3.1959 -4.2117 3.8341 15 6 1.8131 -4.1442 3.7846 16 6 1.2045 -3.3393 2.8303 17 9 -0.1437 -3.2697 2.7782 18 7 1.9248 -2.6431 1.9752 19 6 4.1044 -0.5016 -0.9225 20 6 5.4798 -0.3554 -0.7866 21 6 6.1970 0.3349 -1.7436 22 6 5.5466 0.8903 -2.8304 23 6 4.1771 0.7519 -2.9660 24 6 3.4543 0.0576 -2.0162 25 1 -0.4851 0.8368 -0.0731 26 1 5.0076 -3.5046 2.9270 27 1 3.6925 -4.8305 4.5668 28 1 1.2141 -4.7115 4.4816 29 1 5.9877 -0.7848 0.0644 30 1 7.2666 0.4446 -1.6411 31 1 6.1094 1.4339 -3.5749 32 1 3.6725 1.1873 -3.8158 33 1 2.3849 -0.0497 -2.1225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183774038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:19 Heat of formation + Delta-G solvation = 36.718435 kcal Electronic energy + Delta-G solvation = -22323.973391 eV Core-core repulsion = 18845.457881 eV Total energy + Delta-G solvation = -3478.515510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.45559 -40.49856 -39.19759 -37.39775 -35.28628 -32.41868 -32.13242 -30.78264 -30.15864 -28.98173 -25.45003 -24.41248 -23.11322 -21.96860 -21.42469 -19.89036 -18.47807 -17.17936 -17.07696 -15.96174 -15.80314 -15.71642 -15.52425 -15.41059 -14.58216 -14.24746 -13.86085 -13.64216 -13.15758 -12.88766 -12.86088 -12.71145 -12.63269 -12.28341 -12.09059 -11.95081 -11.37199 -11.06038 -10.68885 -10.33921 -10.11548 -9.73225 -9.63810 -8.93794 -8.92640 -8.68235 -8.46316 -8.08504 -7.09337 -6.39035 -4.27908 0.86335 1.45304 2.03609 2.11637 3.16916 3.25926 3.33606 3.36912 3.76070 4.05710 4.16692 4.23645 4.59609 4.72241 4.97559 5.11801 5.16048 5.25516 5.56157 5.58328 5.71916 5.84292 6.03577 6.07718 6.22805 6.24168 6.33602 6.50676 6.73831 6.90940 7.11598 7.19917 7.22923 7.32701 7.75875 7.95247 8.07904 8.38732 8.79646 9.09321 9.30350 10.61309 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.007389 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.528261 B = 3788.280207 C = 4862.716853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.082 3.918 3 Si 0.861 3.139 4 H -0.255 1.255 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.327 4.327 8 H 0.127 0.873 9 N -0.380 5.380 10 C 0.532 3.468 11 O -0.555 6.555 12 C 0.137 3.863 13 C -0.140 4.140 14 C -0.066 4.066 15 C -0.192 4.192 16 C 0.294 3.706 17 F -0.111 7.111 18 N -0.417 5.417 19 C 0.151 3.849 20 C -0.179 4.179 21 C -0.111 4.111 22 C -0.166 4.166 23 C -0.107 4.107 24 C -0.151 4.151 25 H 0.276 0.724 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.179 0.821 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -4.543 3.462 7.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.127 4.127 3 Si 0.688 3.312 4 H -0.180 1.180 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.454 4.454 8 H 0.144 0.856 9 N -0.086 5.086 10 C 0.324 3.676 11 O -0.439 6.439 12 C -0.002 4.002 13 C -0.161 4.161 14 C -0.091 4.091 15 C -0.214 4.214 16 C 0.139 3.861 17 F -0.090 7.090 18 N -0.132 5.132 19 C 0.055 3.945 20 C -0.198 4.198 21 C -0.129 4.129 22 C -0.185 4.185 23 C -0.126 4.126 24 C -0.171 4.171 25 H 0.087 0.913 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.160 0.840 29 H 0.195 0.805 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.450 -3.921 2.978 7.344 hybrid contribution 0.084 0.538 0.513 0.748 sum 5.534 -3.383 3.491 7.366 Atomic orbital electron populations 1.69615 1.05967 1.28364 1.44211 1.25404 0.95195 0.98231 0.93914 0.87151 0.80814 0.83603 0.79663 1.18033 1.21787 1.18360 1.19290 0.76647 0.96567 1.52941 0.85596 1.41338 1.07692 1.40088 1.19507 1.18365 0.85951 0.82485 0.80821 1.90314 1.13522 1.66429 1.73626 1.20835 0.88130 0.95655 0.95596 1.22119 1.02308 0.96525 0.95194 1.21311 0.92680 0.97465 0.97660 1.22004 0.96317 1.02425 1.00677 1.18630 0.79463 0.94808 0.93228 1.91635 1.27308 1.94667 1.95391 1.68431 1.07043 1.17055 1.20692 1.18502 0.91260 0.94898 0.89813 1.22754 0.93239 1.01280 1.02516 1.21019 0.99118 0.98157 0.94654 1.20953 0.94637 1.03556 0.99360 1.20840 0.94025 0.99171 0.98533 1.21089 1.01674 1.00323 0.94036 0.91334 0.83314 0.83838 0.84048 0.80460 0.86819 0.87236 0.86704 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.47 13.95 55.50 0.77 -22.70 16 2 C 0.08 2.19 4.63 -17.47 -0.08 2.11 16 3 Si 0.86 21.25 23.89 -169.99 -4.06 17.19 16 4 H -0.26 -5.98 6.24 56.52 0.35 -5.63 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.70 6.49 56.52 0.37 -6.33 16 7 C -0.33 -8.57 6.72 -15.02 -0.10 -8.67 16 8 H 0.13 3.54 6.78 -52.49 -0.36 3.19 16 9 N -0.38 -9.38 2.28 -59.94 -0.14 -9.51 16 10 C 0.53 12.31 7.56 -12.28 -0.09 12.22 16 11 O -0.55 -12.62 12.74 5.32 0.07 -12.55 16 12 C 0.14 2.82 6.66 -83.03 -0.55 2.27 16 13 C -0.14 -2.22 9.63 -39.03 -0.38 -2.60 16 14 C -0.07 -0.83 10.16 -39.33 -0.40 -1.23 16 15 C -0.19 -2.67 10.09 -39.23 -0.40 -3.07 16 16 C 0.29 5.52 8.41 -17.36 -0.15 5.37 16 17 F -0.11 -2.18 17.29 2.25 0.04 -2.14 16 18 N -0.42 -9.18 6.59 -10.15 -0.07 -9.25 16 19 C 0.15 3.56 4.14 -83.72 -0.35 3.21 16 20 C -0.18 -3.88 9.03 -39.36 -0.36 -4.24 16 21 C -0.11 -2.05 10.04 -39.61 -0.40 -2.45 16 22 C -0.17 -2.93 10.04 -39.53 -0.40 -3.33 16 23 C -0.11 -2.06 9.83 -39.61 -0.39 -2.44 16 24 C -0.15 -3.38 5.64 -39.37 -0.22 -3.60 16 25 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.15 2.12 7.65 -52.49 -0.40 1.72 16 27 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 28 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 29 H 0.18 3.95 4.57 -56.04 -0.26 3.69 16 30 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 33 H 0.14 3.32 5.72 -52.49 -0.30 3.02 16 LS Contribution 282.49 15.07 4.26 4.26 Total: -1.00 -29.69 282.49 -6.03 -35.72 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -2.65 Total: 5.45 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -4.25 Total: -6.46 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.57 Total: -41.46 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.06 Total: 17.19 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.69 -6.03 -35.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183774038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.435 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds