Wall clock time and date at job start Tue Mar 31 2020 05:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31342 * 1 3 3 Si 1.86800 * 119.99744 * 2 1 4 4 H 1.48500 * 109.46921 * 275.19384 * 3 2 1 5 5 H 1.48500 * 109.47063 * 35.19460 * 3 2 1 6 6 H 1.48500 * 109.46812 * 155.19681 * 3 2 1 7 7 C 1.39025 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00238 * 1.98757 * 7 2 1 9 9 N 1.36854 * 119.99792 * 181.99671 * 7 2 1 10 10 C 1.34775 * 120.00061 * 124.50024 * 9 7 2 11 11 O 1.21555 * 119.99968 * 183.29613 * 10 9 7 12 12 C 1.47957 * 120.00015 * 3.01577 * 10 9 7 13 13 C 1.39350 * 119.71762 * 174.47925 * 12 10 9 14 14 C 1.38612 * 119.11426 * 179.79534 * 13 12 10 15 15 C 1.38535 * 118.53210 * 0.47343 * 14 13 12 16 16 C 1.38890 * 119.35377 * 359.74434 * 15 14 13 17 17 F 1.35095 * 119.58027 * 180.02562 * 16 15 14 18 18 N 1.31711 * 120.84555 * 0.02848 * 16 15 14 19 19 C 1.39703 * 119.99433 * 304.49657 * 9 7 2 20 20 C 1.38983 * 120.07630 * 171.67982 * 19 9 7 21 21 C 1.38082 * 119.91972 * 179.71939 * 20 19 9 22 22 C 1.38306 * 120.07693 * 0.55347 * 21 20 19 23 23 C 1.38311 * 120.16061 * 359.72533 * 22 21 20 24 24 C 1.38078 * 120.08268 * 359.97438 * 23 22 21 25 25 H 0.97005 * 120.00587 * 4.99435 * 1 2 3 26 26 H 1.08001 * 120.43879 * 0.02562 * 13 12 10 27 27 H 1.08001 * 120.73065 * 180.19834 * 14 13 12 28 28 H 1.08001 * 120.32568 * 179.77191 * 15 14 13 29 29 H 1.07999 * 120.03918 * 359.97438 * 20 19 9 30 30 H 1.08003 * 119.95742 * 180.30229 * 21 20 19 31 31 H 1.08002 * 119.92009 * 179.69575 * 22 21 20 32 32 H 1.08005 * 119.95664 * 179.97438 * 23 22 21 33 33 H 1.08000 * 120.03734 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.3850 2.1098 -1.3943 5 1 1.5039 2.6185 0.8069 6 1 3.5955 1.4110 0.5873 7 6 2.0085 -1.2040 -0.0005 8 1 1.4690 -2.1390 -0.0334 9 7 3.3764 -1.2043 0.0408 10 6 4.0212 -1.8827 1.0106 11 8 5.2336 -1.8342 1.0831 12 6 3.2528 -2.6814 1.9908 13 6 3.9281 -3.4718 2.9188 14 6 3.1959 -4.2117 3.8341 15 6 1.8131 -4.1442 3.7846 16 6 1.2045 -3.3393 2.8303 17 9 -0.1437 -3.2697 2.7782 18 7 1.9248 -2.6431 1.9752 19 6 4.1044 -0.5016 -0.9225 20 6 5.4798 -0.3554 -0.7866 21 6 6.1970 0.3349 -1.7436 22 6 5.5466 0.8903 -2.8304 23 6 4.1771 0.7519 -2.9660 24 6 3.4543 0.0576 -2.0162 25 1 -0.4851 0.8368 -0.0731 26 1 5.0076 -3.5046 2.9270 27 1 3.6925 -4.8305 4.5668 28 1 1.2141 -4.7115 4.4816 29 1 5.9877 -0.7848 0.0644 30 1 7.2666 0.4446 -1.6411 31 1 6.1094 1.4339 -3.5749 32 1 3.6725 1.1873 -3.8158 33 1 2.3849 -0.0497 -2.1225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183774038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:19 Heat of formation + Delta-G solvation = 17.896596 kcal Electronic energy + Delta-G solvation = -22324.789567 eV Core-core repulsion = 18845.457881 eV Total energy + Delta-G solvation = -3479.331686 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.89767 -42.13450 -40.64780 -39.00327 -37.05288 -34.11663 -33.71197 -32.20216 -31.72473 -30.53550 -27.31167 -25.91398 -24.46214 -23.50860 -22.99150 -21.55367 -20.27732 -18.72259 -18.53632 -17.68288 -17.27109 -17.05315 -17.04321 -16.97830 -16.31053 -16.00320 -15.50966 -15.08933 -14.71860 -14.62340 -14.43606 -14.29211 -14.02314 -14.00089 -13.66847 -13.19398 -13.15175 -12.68611 -12.48792 -12.09671 -11.92242 -11.38698 -10.99334 -10.84171 -10.59102 -10.06556 -10.04593 -9.68109 -8.84492 -8.37703 -6.30247 -0.50444 0.18939 0.48773 0.54320 1.20944 1.25888 1.35043 1.74869 2.14390 2.22881 2.62859 2.75961 2.86247 3.13265 3.43835 3.79701 3.95358 4.06353 4.13642 4.18113 4.38565 4.46803 4.65582 4.75084 4.79886 4.84101 4.95684 5.03847 5.21112 5.50995 5.56952 5.63487 5.65849 5.71044 5.95517 6.20907 6.38470 6.66477 6.93347 7.18134 7.44349 8.63355 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.007389 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.528261 B = 3788.280207 C = 4862.716853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.049 3.951 3 Si 0.910 3.090 4 H -0.236 1.236 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.308 4.308 8 H 0.094 0.906 9 N -0.402 5.402 10 C 0.527 3.473 11 O -0.558 6.558 12 C 0.093 3.907 13 C -0.124 4.124 14 C -0.041 4.041 15 C -0.156 4.156 16 C 0.259 3.741 17 F -0.128 7.128 18 N -0.471 5.471 19 C 0.120 3.880 20 C -0.199 4.199 21 C -0.103 4.103 22 C -0.152 4.152 23 C -0.107 4.107 24 C -0.177 4.177 25 H 0.277 0.723 26 H 0.167 0.833 27 H 0.207 0.793 28 H 0.188 0.812 29 H 0.169 0.831 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.296 -5.172 4.339 10.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.156 4.156 3 Si 0.737 3.263 4 H -0.160 1.160 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.112 0.888 9 N -0.110 5.110 10 C 0.319 3.681 11 O -0.442 6.442 12 C -0.045 4.045 13 C -0.145 4.145 14 C -0.066 4.066 15 C -0.177 4.177 16 C 0.103 3.897 17 F -0.108 7.108 18 N -0.187 5.187 19 C 0.026 3.974 20 C -0.218 4.218 21 C -0.122 4.122 22 C -0.171 4.171 23 C -0.125 4.125 24 C -0.197 4.197 25 H 0.087 0.913 26 H 0.185 0.815 27 H 0.224 0.776 28 H 0.206 0.794 29 H 0.186 0.814 30 H 0.170 0.830 31 H 0.174 0.826 32 H 0.162 0.838 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.179 -4.549 3.834 10.114 hybrid contribution -0.590 0.541 0.313 0.859 sum 7.589 -4.008 4.147 9.531 Atomic orbital electron populations 1.69692 1.06965 1.28789 1.47430 1.25780 0.95485 1.00134 0.94168 0.86414 0.78547 0.81175 0.80174 1.15984 1.22618 1.20345 1.18836 0.77613 0.95249 1.51913 0.88811 1.41417 1.07107 1.41581 1.20915 1.18876 0.86364 0.81851 0.81008 1.90285 1.13444 1.66454 1.74043 1.20725 0.87970 0.98368 0.97395 1.22436 1.03320 0.94921 0.93867 1.21992 0.91808 0.95924 0.96877 1.22485 0.97304 0.99403 0.98552 1.19044 0.78948 0.96729 0.95023 1.91588 1.28520 1.94997 1.95662 1.67934 1.08295 1.19396 1.23054 1.18814 0.92264 0.95966 0.90396 1.22794 0.92614 1.02779 1.03641 1.21464 1.00887 0.96219 0.93587 1.21451 0.94033 1.02090 0.99501 1.21255 0.95068 0.97920 0.98267 1.21071 1.00914 1.02426 0.95311 0.91305 0.81518 0.77631 0.79432 0.81441 0.83037 0.82575 0.83846 0.86475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.60 13.95 21.67 0.30 -52.29 16 2 C 0.05 2.78 4.63 84.96 0.39 3.17 16 3 Si 0.91 45.99 23.89 68.60 1.64 47.62 16 4 H -0.24 -10.95 6.24 99.48 0.62 -10.33 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 6 H -0.28 -14.75 6.49 99.48 0.65 -14.11 16 7 C -0.31 -17.30 6.72 84.10 0.57 -16.74 16 8 H 0.09 5.78 6.78 -2.91 -0.02 5.76 16 9 N -0.40 -20.91 2.28 -461.84 -1.05 -21.96 16 10 C 0.53 25.34 7.56 86.82 0.66 26.00 16 11 O -0.56 -25.88 12.74 -3.89 -0.05 -25.93 16 12 C 0.09 3.92 6.66 41.83 0.28 4.20 16 13 C -0.12 -3.67 9.63 22.63 0.22 -3.45 16 14 C -0.04 -0.84 10.16 22.43 0.23 -0.61 16 15 C -0.16 -3.80 10.09 22.50 0.23 -3.57 16 16 C 0.26 9.79 8.41 84.87 0.71 10.51 16 17 F -0.13 -5.24 17.29 44.97 0.78 -4.46 16 18 N -0.47 -21.72 6.59 -186.02 -1.23 -22.94 16 19 C 0.12 5.83 4.14 38.24 0.16 5.99 16 20 C -0.20 -8.59 9.03 22.41 0.20 -8.39 16 21 C -0.10 -3.53 10.04 22.25 0.22 -3.30 16 22 C -0.15 -4.78 10.04 22.30 0.22 -4.56 16 23 C -0.11 -3.88 9.83 22.25 0.22 -3.66 16 24 C -0.18 -8.03 5.64 22.41 0.13 -7.91 16 25 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 26 H 0.17 4.27 7.65 -2.91 -0.02 4.25 16 27 H 0.21 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 29 H 0.17 7.52 4.57 -59.12 -0.27 7.25 16 30 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 31 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 33 H 0.12 5.81 5.72 -2.91 -0.02 5.79 16 Total: -1.00 -72.77 282.49 5.58 -67.20 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.76 Total: 15.08 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 4.43 Total: -2.32 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -1.98 Total: -97.20 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.93 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.78 Total: -4.46 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.64 Total: 47.62 kcal Total: -72.77 5.58 -67.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183774038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.093 kcal (2) G-P(sol) polarization free energy of solvation -72.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds