Wall clock time and date at job start Tue Mar 31 2020 06:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47345 * 2 1 4 4 H 1.09002 * 109.46901 * 54.99842 * 3 2 1 5 5 C 1.50694 * 109.47384 * 174.99973 * 3 2 1 6 6 H 1.07998 * 120.00315 * 119.99747 * 5 3 2 7 7 C 1.37877 * 119.99781 * 300.00459 * 5 3 2 8 8 N 1.31523 * 119.99943 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00536 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46949 * 89.99824 * 9 7 5 11 11 H 1.48494 * 109.47553 * 210.00173 * 9 7 5 12 12 H 1.48503 * 109.46950 * 330.00687 * 9 7 5 13 13 N 1.46496 * 109.46844 * 295.00301 * 3 2 1 14 14 C 1.34777 * 120.00266 * 85.00291 * 13 3 2 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 3 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.46817 * 179.97438 * 16 14 13 18 18 C 1.41287 * 128.01349 * 269.70647 * 17 16 14 19 19 C 1.50698 * 126.78897 * 359.97438 * 18 17 16 20 20 N 1.30212 * 106.42011 * 179.83964 * 18 17 16 21 21 O 1.20918 * 111.64901 * 0.44860 * 20 18 17 22 22 C 1.34064 * 111.55020 * 359.70717 * 21 20 18 23 23 Cl 1.73603 * 126.79758 * 180.02562 * 22 21 20 24 24 H 1.09009 * 109.46899 * 300.00200 * 1 2 3 25 25 H 1.08994 * 109.47157 * 59.99495 * 1 2 3 26 26 H 1.08997 * 109.47231 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46772 * 239.99345 * 2 1 3 28 28 H 1.09004 * 109.46647 * 120.00258 * 2 1 3 29 29 H 0.96994 * 120.00114 * 180.02562 * 8 7 5 30 30 H 0.96999 * 119.99691 * 264.99277 * 13 3 2 31 31 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 32 32 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 33 33 H 1.09004 * 109.47114 * 90.00348 * 19 18 17 34 34 H 1.09003 * 109.47284 * 209.99997 * 19 18 17 35 35 H 1.08996 * 109.47208 * 330.00651 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2279 8 7 5.4540 0.8794 1.3358 9 14 3.0964 0.1098 2.5707 10 1 2.8745 -1.3263 2.2644 11 1 3.7941 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3375 2.6367 -0.4325 16 6 0.0368 3.3386 -2.6545 17 6 -1.3612 3.8860 -2.5231 18 6 -2.5804 3.2411 -2.8292 19 6 -2.7524 1.8424 -3.3632 20 7 -3.5263 4.0933 -2.5560 21 8 -3.0794 5.1399 -2.1473 22 6 -1.7402 5.1143 -2.0891 23 17 -0.6975 6.3983 -1.5620 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.8771 0.4809 2.1124 30 1 2.2720 2.1231 -1.9977 31 1 0.7282 4.1541 -2.8667 32 1 0.0681 2.6145 -3.4686 33 1 -2.8445 1.1446 -2.5309 34 1 -3.6517 1.7960 -3.9774 35 1 -1.8855 1.5750 -3.9673 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183817856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:39 Heat of formation + Delta-G solvation = 18.309907 kcal Electronic energy + Delta-G solvation = -20857.942540 eV Core-core repulsion = 17499.656231 eV Total energy + Delta-G solvation = -3358.286308 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.09773 -39.34244 -37.27345 -35.81130 -34.99599 -32.62477 -32.31567 -31.52124 -29.12070 -28.63905 -27.24319 -22.97107 -22.33071 -21.54778 -20.63511 -19.63180 -18.00200 -17.80434 -17.20551 -15.89897 -15.81949 -15.70943 -14.66904 -14.46938 -13.88117 -13.51284 -13.33453 -13.10721 -13.03244 -12.82167 -12.65961 -12.46936 -12.19244 -12.00476 -11.85709 -11.59179 -11.11484 -10.97030 -10.92697 -10.66765 -10.07906 -9.95909 -9.61558 -9.43234 -9.25488 -9.03592 -8.78367 -8.11605 -6.24188 -4.26793 0.98848 1.18387 1.99589 3.15095 3.21053 3.33426 3.38125 3.50493 3.89233 4.02502 4.28760 4.46787 4.71859 4.85682 5.09524 5.30062 5.31559 5.41433 5.47697 5.58682 5.59476 5.92315 5.96103 5.98355 6.13949 6.61064 6.66183 6.80412 6.91121 7.22515 7.26226 7.48034 7.99112 8.10772 8.48016 8.72513 8.88844 9.36762 10.87838 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.004922 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.270718 B = 5687.476583 C = 6293.882815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.699 5.699 14 C 0.505 3.495 15 O -0.541 6.541 16 C -0.073 4.073 17 C -0.141 4.141 18 C 0.044 3.956 19 C -0.077 4.077 20 N -0.352 5.352 21 O 0.106 5.894 22 C 0.010 3.990 23 Cl 0.049 6.951 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.031 0.969 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.267 0.733 30 H 0.395 0.605 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 5.257 -10.812 17.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.711 3.289 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.289 3.711 15 O -0.419 6.419 16 C -0.113 4.113 17 C -0.146 4.146 18 C -0.115 4.115 19 C -0.134 4.134 20 N -0.059 5.059 21 O 0.040 5.960 22 C -0.080 4.080 23 Cl 0.077 6.923 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.229 0.771 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.852 5.261 -10.033 17.895 hybrid contribution 0.870 -0.419 0.544 1.109 sum -12.982 4.842 -9.489 16.794 Atomic orbital electron populations 1.21870 0.96993 0.98977 1.02210 1.22286 0.94293 0.99998 1.01130 1.19144 0.95615 0.88445 0.82816 0.93323 1.21042 0.88590 1.39831 1.07853 0.90153 1.24827 0.94838 0.95137 0.97641 1.69865 1.08679 1.44459 1.29851 0.86923 0.80994 0.79952 0.80988 1.20245 1.22151 1.18485 1.46132 1.14607 1.55954 1.18070 1.20110 0.82765 0.79434 0.88766 1.90696 1.51530 1.59455 1.40185 1.20069 0.90790 1.01821 0.98627 1.20146 0.96863 0.91963 1.05625 1.23217 0.88191 0.98817 1.01244 1.20222 1.03589 0.88083 1.01531 1.73885 1.21918 0.93590 1.16486 1.84873 1.17992 1.30398 1.62703 1.24460 0.84587 0.93655 1.05264 1.98458 1.58191 1.47323 1.88317 0.92949 0.92971 0.95006 0.92264 0.92805 0.92266 0.77130 0.87465 0.87350 0.89502 0.90320 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.52 37.16 0.32 -2.44 16 2 C -0.14 -2.95 5.11 -26.73 -0.14 -3.09 16 3 C 0.24 5.50 1.83 -69.09 -0.13 5.38 16 4 H 0.05 1.24 6.63 -51.93 -0.34 0.90 16 5 C -0.54 -13.96 9.31 -34.44 -0.32 -14.28 16 6 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 9 Si 0.88 21.43 24.41 -169.99 -4.15 17.28 16 10 H -0.28 -6.49 6.83 56.52 0.39 -6.10 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.70 -12.66 5.02 -54.94 -0.28 -12.93 16 14 C 0.50 8.55 6.38 -10.98 -0.07 8.48 16 15 O -0.54 -11.15 13.19 5.56 0.07 -11.08 16 16 C -0.07 -0.88 6.10 -29.03 -0.18 -1.06 16 17 C -0.14 -1.90 4.82 -104.38 -0.50 -2.40 16 18 C 0.04 0.58 7.32 -82.12 -0.60 -0.02 16 19 C -0.08 -0.76 10.39 36.00 0.37 -0.39 16 20 N -0.35 -5.14 12.07 33.44 0.40 -4.73 16 21 O 0.11 1.52 11.20 17.12 0.19 1.71 16 22 C 0.01 0.14 8.12 29.82 0.24 0.38 16 23 Cl 0.05 0.59 29.23 -51.86 -1.52 -0.92 16 24 H 0.05 1.09 7.85 -51.92 -0.41 0.68 16 25 H 0.05 0.95 5.65 -51.93 -0.29 0.66 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 1.23 3.22 -51.93 -0.17 1.06 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.40 6.14 8.54 -40.82 -0.35 5.80 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 0.98 7.65 -51.93 -0.40 0.59 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.66 7.65 -51.93 -0.40 0.27 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -31.31 307.08 -5.04 -36.35 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.07 Total: 2.23 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.10 Total: -7.35 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.90 Total: -42.84 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.27 Total: -9.37 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.15 Total: 17.28 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -1.52 Total: -0.92 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.31 -5.04 -36.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183817856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.662 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds