Wall clock time and date at job start Tue Mar 31 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47345 * 2 1 4 4 H 1.09002 * 109.46901 * 54.99842 * 3 2 1 5 5 C 1.50694 * 109.47384 * 174.99973 * 3 2 1 6 6 H 1.07998 * 120.00315 * 119.99747 * 5 3 2 7 7 C 1.37877 * 119.99781 * 300.00459 * 5 3 2 8 8 N 1.31523 * 119.99943 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00536 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46949 * 89.99824 * 9 7 5 11 11 H 1.48494 * 109.47553 * 210.00173 * 9 7 5 12 12 H 1.48503 * 109.46950 * 330.00687 * 9 7 5 13 13 N 1.46496 * 109.46844 * 295.00301 * 3 2 1 14 14 C 1.34777 * 120.00266 * 85.00291 * 13 3 2 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 3 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.46817 * 179.97438 * 16 14 13 18 18 C 1.41287 * 128.01349 * 269.70647 * 17 16 14 19 19 C 1.50698 * 126.78897 * 359.97438 * 18 17 16 20 20 N 1.30212 * 106.42011 * 179.83964 * 18 17 16 21 21 O 1.20918 * 111.64901 * 0.44860 * 20 18 17 22 22 C 1.34064 * 111.55020 * 359.70717 * 21 20 18 23 23 Cl 1.73603 * 126.79758 * 180.02562 * 22 21 20 24 24 H 1.09009 * 109.46899 * 300.00200 * 1 2 3 25 25 H 1.08994 * 109.47157 * 59.99495 * 1 2 3 26 26 H 1.08997 * 109.47231 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46772 * 239.99345 * 2 1 3 28 28 H 1.09004 * 109.46647 * 120.00258 * 2 1 3 29 29 H 0.96994 * 120.00114 * 180.02562 * 8 7 5 30 30 H 0.96999 * 119.99691 * 264.99277 * 13 3 2 31 31 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 32 32 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 33 33 H 1.09004 * 109.47114 * 90.00348 * 19 18 17 34 34 H 1.09003 * 109.47284 * 209.99997 * 19 18 17 35 35 H 1.08996 * 109.47208 * 330.00651 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8783 1.2279 8 7 5.4540 0.8794 1.3358 9 14 3.0964 0.1098 2.5707 10 1 2.8745 -1.3263 2.2644 11 1 3.7941 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3375 2.6367 -0.4325 16 6 0.0368 3.3386 -2.6545 17 6 -1.3612 3.8860 -2.5231 18 6 -2.5804 3.2411 -2.8292 19 6 -2.7524 1.8424 -3.3632 20 7 -3.5263 4.0933 -2.5560 21 8 -3.0794 5.1399 -2.1473 22 6 -1.7402 5.1143 -2.0891 23 17 -0.6975 6.3983 -1.5620 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 5.8771 0.4809 2.1124 30 1 2.2720 2.1231 -1.9977 31 1 0.7282 4.1541 -2.8667 32 1 0.0681 2.6145 -3.4686 33 1 -2.8445 1.1446 -2.5309 34 1 -3.6517 1.7960 -3.9774 35 1 -1.8855 1.5750 -3.9673 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183817856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:38 Heat of formation + Delta-G solvation = -3.275079 kcal Electronic energy + Delta-G solvation = -20858.878535 eV Core-core repulsion = 17499.656231 eV Total energy + Delta-G solvation = -3359.222304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.11536 -40.77799 -38.27433 -37.27533 -36.22118 -34.36892 -33.68009 -32.97723 -30.23849 -29.68655 -28.86625 -24.69180 -23.63166 -22.54429 -22.10891 -21.14947 -19.27987 -18.87413 -18.70513 -17.56898 -17.39991 -16.83670 -16.09206 -15.96855 -15.31262 -14.84254 -14.62789 -14.28408 -14.12636 -14.10388 -13.80519 -13.65121 -13.56399 -13.44704 -13.13324 -12.90375 -12.74547 -12.72890 -12.35981 -11.94284 -11.83748 -11.36191 -11.20372 -11.09009 -10.84338 -10.71048 -10.22652 -9.70893 -8.36305 -6.40614 -0.02739 0.15483 0.99591 1.26782 1.35914 1.44630 1.83715 2.26788 2.45135 2.65193 3.00121 3.02855 3.50649 3.78273 3.83200 4.13663 4.28421 4.36452 4.45840 4.51281 4.61122 4.65958 4.72070 4.80052 4.89898 5.05488 5.15504 5.18952 5.27477 5.45452 5.56417 5.71910 6.17805 6.62779 6.95282 6.97310 7.23043 7.54453 8.78805 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.004922 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.270718 B = 5687.476583 C = 6293.882815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.060 0.940 7 C 0.031 3.969 8 N -0.934 5.934 9 Si 0.932 3.068 10 H -0.260 1.260 11 H -0.297 1.297 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.506 3.494 15 O -0.578 6.578 16 C -0.062 4.062 17 C -0.151 4.151 18 C 0.044 3.956 19 C -0.079 4.079 20 N -0.374 5.374 21 O 0.093 5.907 22 C 0.003 3.997 23 Cl 0.057 6.943 24 H 0.029 0.971 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.269 0.731 30 H 0.409 0.591 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.274 4.495 -12.297 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.036 0.964 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.169 4.169 8 N -0.573 5.573 9 Si 0.760 3.240 10 H -0.186 1.186 11 H -0.224 1.224 12 H -0.188 1.188 13 N -0.348 5.348 14 C 0.293 3.707 15 O -0.458 6.458 16 C -0.102 4.102 17 C -0.156 4.156 18 C -0.115 4.115 19 C -0.136 4.136 20 N -0.083 5.083 21 O 0.030 5.970 22 C -0.087 4.087 23 Cl 0.086 6.914 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.245 0.755 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.883 4.521 -11.549 19.373 hybrid contribution 1.195 -0.098 0.959 1.535 sum -13.689 4.423 -10.590 17.863 Atomic orbital electron populations 1.21755 0.95209 1.00420 1.01621 1.22200 0.95807 0.98515 1.01026 1.18733 0.93015 0.89628 0.84070 0.96364 1.21318 0.90469 1.38111 1.06786 0.92163 1.25494 0.95575 0.96035 0.99757 1.69971 1.10192 1.46336 1.30831 0.86105 0.79293 0.80003 0.78573 1.18620 1.22444 1.18777 1.45932 1.15699 1.56152 1.16980 1.20833 0.81528 0.78381 0.89936 1.90693 1.52454 1.60627 1.42044 1.20101 0.90309 1.03037 0.96724 1.20384 0.97536 0.91883 1.05815 1.23798 0.87775 0.99773 1.00110 1.20414 1.05584 0.85851 1.01765 1.73885 1.22753 0.94068 1.17640 1.84848 1.18356 1.30659 1.63156 1.24747 0.84628 0.94317 1.04998 1.98459 1.57753 1.46998 1.88210 0.95134 0.91984 0.92477 0.90863 0.94327 0.92206 0.75498 0.85309 0.83287 0.89982 0.88945 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.52 71.98 0.61 -4.18 16 2 C -0.14 -5.56 5.11 30.59 0.16 -5.40 16 3 C 0.25 11.11 1.83 44.24 0.08 11.19 16 4 H 0.02 0.94 6.63 -2.39 -0.02 0.92 16 5 C -0.53 -27.55 9.31 25.60 0.24 -27.31 16 6 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 7 C 0.03 1.71 5.45 84.65 0.46 2.17 16 8 N -0.93 -55.01 13.96 21.45 0.30 -54.72 16 9 Si 0.93 44.23 24.41 68.60 1.67 45.90 16 10 H -0.26 -11.62 6.83 99.48 0.68 -10.94 16 11 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.26 -12.48 6.53 99.48 0.65 -11.83 16 13 N -0.70 -23.89 5.02 -446.12 -2.24 -26.13 16 14 C 0.51 15.95 6.38 87.66 0.56 16.51 16 15 O -0.58 -23.04 13.19 -3.01 -0.04 -23.08 16 16 C -0.06 -1.29 6.10 29.10 0.18 -1.11 16 17 C -0.15 -3.71 4.82 -19.71 -0.10 -3.80 16 18 C 0.04 1.08 7.32 43.55 0.32 1.39 16 19 C -0.08 -1.32 10.39 71.24 0.74 -0.58 16 20 N -0.37 -10.48 12.07 -49.43 -0.60 -11.08 16 21 O 0.09 2.60 11.20 71.42 0.80 3.40 16 22 C 0.00 0.08 8.12 67.23 0.55 0.63 16 23 Cl 0.06 1.32 29.23 -2.72 -0.08 1.24 16 24 H 0.03 1.21 7.85 -2.38 -0.02 1.20 16 25 H 0.06 2.09 5.65 -2.39 -0.01 2.08 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.04 1.69 3.22 -2.39 -0.01 1.68 16 29 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 30 H 0.41 11.73 8.54 -92.71 -0.79 10.94 16 31 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.15 1.92 7.65 -2.39 -0.02 1.90 16 33 H 0.08 1.49 8.14 -2.38 -0.02 1.48 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.24 7.65 -2.39 -0.02 1.22 16 Total: -1.00 -68.18 307.08 3.88 -64.31 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.26 Total: 10.63 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 3.80 Total: -10.49 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -2.54 Total: -91.92 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.76 Total: -19.68 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.67 Total: 45.90 kcal Atomic # 17 Polarization: 1.32 SS G_CDS: -0.08 Total: 1.24 kcal Total: -68.18 3.88 -64.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183817856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.030 kcal (2) G-P(sol) polarization free energy of solvation -68.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds