Wall clock time and date at job start Tue Mar 31 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09008 * 109.46712 * 164.95986 * 6 5 4 8 8 C 1.52993 * 109.47437 * 284.96202 * 6 5 4 9 9 N 1.46898 * 109.47118 * 44.96410 * 6 5 4 10 10 C 1.46897 * 111.00141 * 154.99640 * 9 6 5 11 11 C 1.53001 * 109.47229 * 180.02562 * 10 9 6 12 12 C 1.52999 * 109.47226 * 180.02562 * 11 10 9 13 13 S 1.80996 * 109.47226 * 179.97438 * 12 11 10 14 14 C 1.76207 * 100.00081 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99635 * 0.02562 * 14 13 12 16 16 C 1.38796 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31630 * 120.00526 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99646 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47450 * 60.00192 * 18 16 14 20 20 H 1.48505 * 109.46918 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46952 * 299.99631 * 18 16 14 22 22 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 26 26 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 27 27 H 1.08995 * 109.47518 * 60.00294 * 8 6 5 28 28 H 1.08999 * 109.47336 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47205 * 299.99946 * 8 6 5 30 30 H 1.00900 * 111.00290 * 31.03813 * 9 6 5 31 31 H 1.09004 * 109.47215 * 299.99587 * 10 9 6 32 32 H 1.08997 * 109.47521 * 59.99583 * 10 9 6 33 33 H 1.09001 * 109.46805 * 299.99367 * 11 10 9 34 34 H 1.08994 * 109.47600 * 59.99749 * 11 10 9 35 35 H 1.09012 * 109.46860 * 299.99582 * 12 11 10 36 36 H 1.08997 * 109.47753 * 59.99289 * 12 11 10 37 37 H 0.96999 * 120.00411 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3674 -1.9829 0.2566 8 6 5.9585 -0.7343 -1.3964 9 7 6.1391 -0.1673 0.9791 10 6 7.2938 -0.9475 1.4435 11 6 8.0857 -0.1280 2.4645 12 6 9.2887 -0.9404 2.9477 13 16 10.2259 0.0293 4.1549 14 6 11.5135 -1.1130 4.5318 15 1 11.5371 -2.0787 4.0487 16 6 12.4980 -0.7713 5.4485 17 7 12.4696 0.4058 6.0369 18 14 13.8635 -1.9821 5.8474 19 1 14.6204 -2.3000 4.6100 20 1 14.7815 -1.3808 6.8479 21 1 13.2743 -3.2277 6.4012 22 16 2.5436 -1.4248 -0.0077 23 1 -0.3633 -0.0055 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5091 26 1 1.9025 2.0874 -0.0004 27 1 5.9444 0.3239 -1.6573 28 1 6.9869 -1.0954 -1.3979 29 1 5.3754 -1.2962 -2.1261 30 1 5.5636 0.1238 1.7551 31 1 6.9457 -1.8694 1.9096 32 1 7.9343 -1.1887 0.5952 33 1 8.4338 0.7940 1.9988 34 1 7.4450 0.1127 3.3127 35 1 8.9410 -1.8627 3.4133 36 1 9.9294 -1.1808 2.0993 37 1 13.1579 0.6448 6.6773 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184977535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:25 Heat of formation + Delta-G solvation = 23.252010 kcal Electronic energy + Delta-G solvation = -17012.501781 eV Core-core repulsion = 14235.059450 eV Total energy + Delta-G solvation = -2777.442331 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.08518 -37.27195 -33.94478 -32.43691 -32.33859 -29.79430 -27.36617 -25.73278 -25.08182 -24.35333 -22.07688 -21.12530 -19.14304 -18.36339 -17.41166 -16.23376 -15.56899 -15.27995 -14.88640 -14.77495 -14.64556 -14.09934 -13.85985 -13.44097 -13.27407 -13.11746 -12.96018 -12.48119 -12.28243 -12.18450 -11.57613 -11.53349 -11.46291 -11.25248 -11.02962 -10.79160 -10.61401 -10.37741 -9.81388 -9.52686 -9.49823 -9.05636 -9.02542 -8.48137 -8.26678 -6.49365 -6.19715 -3.89881 0.38729 0.99860 1.43151 2.58735 3.23458 3.25031 3.29598 3.57891 3.81350 4.13149 4.25862 4.55494 4.62834 4.75740 5.00037 5.05674 5.08286 5.15883 5.30167 5.34753 5.40181 5.47180 5.49408 5.59105 5.69112 5.77024 5.89557 5.93278 6.11107 6.15782 6.36635 6.63407 6.75694 6.97327 7.30869 7.53753 7.62802 8.39141 9.26168 10.88385 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.041732 B = 0.002385 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.785933 B =11737.452831 C =11898.742035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.226 4.226 3 C 0.033 3.967 4 N -0.445 5.445 5 C 0.044 3.956 6 C 0.165 3.835 7 H 0.061 0.939 8 C -0.134 4.134 9 N -0.669 5.669 10 C 0.062 3.938 11 C -0.095 4.095 12 C -0.112 4.112 13 S -0.132 6.132 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.070 3.930 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 S 0.111 5.889 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.175 0.825 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.346 0.654 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.333 -3.612 -14.271 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.347 4.347 3 C -0.118 4.118 4 N -0.158 5.158 5 C -0.235 4.235 6 C 0.052 3.948 7 H 0.079 0.921 8 C -0.193 4.193 9 N -0.302 5.302 10 C -0.069 4.069 11 C -0.134 4.134 12 C -0.261 4.261 13 S 0.096 5.904 14 C -0.665 4.665 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.200 1.200 22 S 0.366 5.634 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.192 0.808 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.165 0.835 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.801 -2.775 -14.201 27.004 hybrid contribution 0.316 -1.735 0.439 1.817 sum -22.485 -4.509 -13.763 26.746 Atomic orbital electron populations 1.20231 0.86756 1.03388 1.03017 1.26030 1.01625 0.95029 1.11993 1.21817 0.86967 1.00126 1.02906 1.66220 1.17128 1.18372 1.14092 1.27162 1.00373 0.91476 1.04442 1.20116 0.83689 0.95069 0.95975 0.92111 1.21790 1.00792 1.03480 0.93259 1.60528 1.10421 1.41170 1.18048 1.22154 0.91915 0.94497 0.98319 1.21229 0.95634 0.98986 0.97506 1.23219 0.98982 1.01660 1.02239 1.84660 1.29760 1.25434 1.50530 1.22653 1.11673 1.02849 1.29303 0.91039 1.25017 0.97761 0.95899 0.95158 1.70014 1.34062 1.19784 1.26676 0.86227 0.80616 0.80439 0.78257 1.19939 1.20832 1.19976 1.84014 0.99052 1.11672 1.68711 0.90468 0.91144 0.90167 0.80798 0.90939 0.91306 0.92664 0.83495 0.95284 0.90720 0.90537 0.91829 0.92370 0.92066 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.42 36.01 0.38 -0.01 16 2 C -0.23 -1.88 6.60 -35.92 -0.24 -2.12 16 3 C 0.03 0.32 11.25 -19.18 -0.22 0.11 16 4 N -0.45 -5.42 10.50 -11.86 -0.12 -5.54 16 5 C 0.04 0.49 5.90 -13.45 -0.08 0.41 16 6 C 0.16 1.80 3.11 -68.87 -0.21 1.58 16 7 H 0.06 0.60 7.80 -51.92 -0.40 0.19 16 8 C -0.13 -1.36 9.40 37.15 0.35 -1.01 16 9 N -0.67 -8.55 6.27 -107.95 -0.68 -9.22 16 10 C 0.06 0.83 5.48 -3.82 -0.02 0.81 16 11 C -0.09 -1.58 5.48 -26.73 -0.15 -1.73 16 12 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 13 S -0.13 -3.52 21.44 -107.50 -2.30 -5.83 16 14 C -0.52 -15.00 9.50 30.94 0.29 -14.71 16 15 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 16 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 17 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 18 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 S 0.11 0.98 23.18 -107.50 -2.49 -1.52 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.18 1.32 8.06 -52.49 -0.42 0.89 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.35 4.52 8.35 -39.29 -0.33 4.19 16 31 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 32 H 0.07 0.98 7.44 -51.93 -0.39 0.59 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 36 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -32.25 340.33 -10.24 -42.48 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.70 Total: 0.18 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 0.22 Total: -16.81 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.07 Total: -40.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -4.80 Total: -7.34 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.25 -10.24 -42.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184977535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.736 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds