Wall clock time and date at job start Tue Mar 31 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09008 * 109.46712 * 164.95986 * 6 5 4 8 8 C 1.52993 * 109.47437 * 284.96202 * 6 5 4 9 9 N 1.46898 * 109.47118 * 44.96410 * 6 5 4 10 10 C 1.46897 * 111.00141 * 154.99640 * 9 6 5 11 11 C 1.53001 * 109.47229 * 180.02562 * 10 9 6 12 12 C 1.52999 * 109.47226 * 180.02562 * 11 10 9 13 13 S 1.80996 * 109.47226 * 179.97438 * 12 11 10 14 14 C 1.76207 * 100.00081 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99635 * 0.02562 * 14 13 12 16 16 C 1.38796 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31630 * 120.00526 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99646 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47450 * 60.00192 * 18 16 14 20 20 H 1.48505 * 109.46918 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46952 * 299.99631 * 18 16 14 22 22 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 26 26 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 27 27 H 1.08995 * 109.47518 * 60.00294 * 8 6 5 28 28 H 1.08999 * 109.47336 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47205 * 299.99946 * 8 6 5 30 30 H 1.00900 * 111.00290 * 31.03813 * 9 6 5 31 31 H 1.09004 * 109.47215 * 299.99587 * 10 9 6 32 32 H 1.08997 * 109.47521 * 59.99583 * 10 9 6 33 33 H 1.09001 * 109.46805 * 299.99367 * 11 10 9 34 34 H 1.08994 * 109.47600 * 59.99749 * 11 10 9 35 35 H 1.09012 * 109.46860 * 299.99582 * 12 11 10 36 36 H 1.08997 * 109.47753 * 59.99289 * 12 11 10 37 37 H 0.96999 * 120.00411 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3674 -1.9829 0.2566 8 6 5.9585 -0.7343 -1.3964 9 7 6.1391 -0.1673 0.9791 10 6 7.2938 -0.9475 1.4435 11 6 8.0857 -0.1280 2.4645 12 6 9.2887 -0.9404 2.9477 13 16 10.2259 0.0293 4.1549 14 6 11.5135 -1.1130 4.5318 15 1 11.5371 -2.0787 4.0487 16 6 12.4980 -0.7713 5.4485 17 7 12.4696 0.4058 6.0369 18 14 13.8635 -1.9821 5.8474 19 1 14.6204 -2.3000 4.6100 20 1 14.7815 -1.3808 6.8479 21 1 13.2743 -3.2277 6.4012 22 16 2.5436 -1.4248 -0.0077 23 1 -0.3633 -0.0055 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5091 26 1 1.9025 2.0874 -0.0004 27 1 5.9444 0.3239 -1.6573 28 1 6.9869 -1.0954 -1.3979 29 1 5.3754 -1.2962 -2.1261 30 1 5.5636 0.1238 1.7551 31 1 6.9457 -1.8694 1.9096 32 1 7.9343 -1.1887 0.5952 33 1 8.4338 0.7940 1.9988 34 1 7.4450 0.1127 3.3127 35 1 8.9410 -1.8627 3.4133 36 1 9.9294 -1.1808 2.0993 37 1 13.1579 0.6448 6.6773 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184977535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:25 Heat of formation + Delta-G solvation = 2.407812 kcal Electronic energy + Delta-G solvation = -17013.405653 eV Core-core repulsion = 14235.059450 eV Total energy + Delta-G solvation = -2778.346203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82982 -38.24587 -35.05999 -34.58766 -33.12666 -30.85717 -28.05930 -27.82017 -26.19820 -25.27809 -22.91639 -22.43336 -19.95725 -19.49684 -19.08676 -17.20918 -16.88992 -16.55984 -16.30713 -15.89902 -15.78482 -15.37097 -14.86383 -14.71046 -14.10726 -13.85949 -13.77208 -13.66461 -13.46917 -13.25214 -12.98402 -12.90371 -12.85260 -12.48050 -12.37721 -12.30949 -12.11762 -11.73867 -11.38908 -11.12753 -10.55335 -10.31145 -10.20127 -9.74232 -9.44939 -8.66572 -8.36411 -6.13225 -0.31804 0.31856 0.72634 1.31581 1.41502 1.48279 1.74658 1.85549 2.29267 2.97499 3.05333 3.13317 3.35402 3.84549 4.02601 4.02947 4.13024 4.26520 4.30177 4.33555 4.37278 4.51847 4.71393 4.71657 4.77745 4.83650 4.88820 4.92876 5.04280 5.18291 5.25632 5.30276 5.34230 5.39885 5.96934 6.18542 6.29137 6.81790 7.05259 8.72805 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.041732 B = 0.002385 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.785933 B =11737.452831 C =11898.742035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.216 4.216 3 C 0.008 3.992 4 N -0.476 5.476 5 C 0.020 3.980 6 C 0.164 3.836 7 H 0.075 0.925 8 C -0.130 4.130 9 N -0.678 5.678 10 C 0.075 3.925 11 C -0.084 4.084 12 C -0.085 4.085 13 S -0.203 6.203 14 C -0.538 4.538 15 H 0.074 0.926 16 C 0.013 3.987 17 N -0.908 5.908 18 Si 0.995 3.005 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.264 1.264 22 S 0.138 5.862 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.189 0.811 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.343 0.657 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.432 -5.432 -15.071 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.337 4.337 3 C -0.142 4.142 4 N -0.190 5.190 5 C -0.257 4.257 6 C 0.051 3.949 7 H 0.093 0.907 8 C -0.189 4.189 9 N -0.311 5.311 10 C -0.056 4.056 11 C -0.123 4.123 12 C -0.235 4.235 13 S 0.025 5.975 14 C -0.685 4.685 15 H 0.092 0.908 16 C -0.192 4.192 17 N -0.545 5.545 18 Si 0.817 3.183 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.188 1.188 22 S 0.393 5.607 23 H 0.105 0.895 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.206 0.794 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.911 -4.594 -15.015 28.606 hybrid contribution 0.500 -1.148 0.630 1.402 sum -23.411 -5.742 -14.385 28.071 Atomic orbital electron populations 1.20392 0.84403 1.04698 1.04017 1.26485 1.03124 0.94379 1.09747 1.22096 0.86569 1.01366 1.04172 1.66196 1.18625 1.19403 1.14769 1.27121 1.01033 0.91841 1.05749 1.20167 0.83759 0.95469 0.95468 0.90691 1.21756 1.01249 1.02472 0.93433 1.60471 1.10643 1.41765 1.18211 1.21944 0.92015 0.94105 0.97531 1.21103 0.94455 0.98486 0.98214 1.23133 0.99162 1.01085 1.00103 1.84713 1.31122 1.28164 1.53464 1.23013 1.12514 1.03166 1.29842 0.90761 1.26110 1.00467 0.97925 0.94694 1.70158 1.35164 1.21868 1.27285 0.85046 0.76996 0.77848 0.78397 1.18862 1.20038 1.18829 1.83847 0.97842 1.11101 1.67932 0.89458 0.90047 0.88648 0.79441 0.92839 0.91062 0.91016 0.83855 0.94081 0.89990 0.91738 0.92187 0.91760 0.91647 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.42 71.24 0.74 0.16 16 2 C -0.22 -3.21 6.60 24.64 0.16 -3.05 16 3 C 0.01 0.15 11.25 83.66 0.94 1.09 16 4 N -0.48 -11.41 10.50 -191.44 -2.01 -13.42 16 5 C 0.02 0.43 5.90 88.52 0.52 0.95 16 6 C 0.16 3.38 3.11 44.17 0.14 3.52 16 7 H 0.08 1.32 7.80 -2.38 -0.02 1.31 16 8 C -0.13 -2.51 9.40 71.98 0.68 -1.83 16 9 N -0.68 -16.83 6.27 -495.45 -3.11 -19.94 16 10 C 0.07 1.91 5.48 86.30 0.47 2.38 16 11 C -0.08 -2.77 5.48 30.59 0.17 -2.60 16 12 C -0.09 -3.46 5.67 71.98 0.41 -3.05 16 13 S -0.20 -11.08 21.44 -56.49 -1.21 -12.29 16 14 C -0.54 -31.47 9.50 67.95 0.65 -30.82 16 15 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 16 C 0.01 0.74 5.49 84.86 0.47 1.20 16 17 N -0.91 -55.74 13.22 21.65 0.29 -55.45 16 18 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 S 0.14 2.19 23.18 -56.49 -1.31 0.88 16 23 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 25 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.31 7.45 -2.39 -0.02 1.30 16 29 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.34 8.84 8.35 -89.69 -0.75 8.10 16 31 H 0.04 0.96 8.06 -2.38 -0.02 0.95 16 32 H 0.08 2.00 7.44 -2.39 -0.02 1.98 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 36 H 0.06 2.59 8.14 -2.40 -0.02 2.57 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -70.16 340.33 0.32 -69.84 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.31 Total: 16.10 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 5.34 Total: -32.05 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -4.83 Total: -88.81 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -2.52 Total: -11.41 kcal Total: -70.16 0.32 -69.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184977535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.247 kcal (2) G-P(sol) polarization free energy of solvation -70.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds