Wall clock time and date at job start Tue Mar 31 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09002 * 109.46673 * 195.04264 * 6 5 4 8 8 C 1.52994 * 109.46883 * 75.04566 * 6 5 4 9 9 N 1.46902 * 109.47240 * 315.03890 * 6 5 4 10 10 C 1.46893 * 110.99688 * 205.00324 * 9 6 5 11 11 C 1.53003 * 109.47026 * 180.02562 * 10 9 6 12 12 C 1.52999 * 109.47611 * 179.97438 * 11 10 9 13 13 S 1.80994 * 109.47537 * 179.97438 * 12 11 10 14 14 C 1.76199 * 100.00167 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00099 * 359.97438 * 14 13 12 16 16 C 1.38800 * 120.00232 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99617 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00104 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47362 * 59.99626 * 18 16 14 20 20 H 1.48503 * 109.46907 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47083 * 299.99625 * 18 16 14 22 22 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 26 26 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.46855 * 299.98985 * 8 6 5 28 28 H 1.08992 * 109.48027 * 59.99830 * 8 6 5 29 29 H 1.09013 * 109.46668 * 180.02562 * 8 6 5 30 30 H 1.00898 * 110.99959 * 328.95865 * 9 6 5 31 31 H 1.09002 * 109.47586 * 300.00093 * 10 9 6 32 32 H 1.08999 * 109.47511 * 60.00259 * 10 9 6 33 33 H 1.08999 * 109.47294 * 299.99736 * 11 10 9 34 34 H 1.08999 * 109.46961 * 59.99681 * 11 10 9 35 35 H 1.09007 * 109.46956 * 300.00242 * 12 11 10 36 36 H 1.09005 * 109.46790 * 59.99288 * 12 11 10 37 37 H 0.97005 * 119.99593 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3674 -1.9799 -0.2780 8 6 5.9584 -0.7493 1.3884 9 7 6.1391 -0.1567 -0.9809 10 6 7.2937 -0.9320 -1.4537 11 6 8.0863 -0.1011 -2.4648 12 6 9.2894 -0.9082 -2.9569 13 16 10.2266 0.0744 -4.1536 14 6 11.5141 -1.0638 -4.5427 15 1 11.5377 -2.0346 -4.0701 16 6 12.4986 -0.7123 -5.4558 17 7 12.4701 0.4711 -6.0314 18 14 13.8632 -1.9193 -5.8688 19 1 13.2733 -3.1582 -6.4364 20 1 14.7807 -1.3077 -6.8635 21 1 14.6202 -2.2516 -4.6352 22 16 2.5436 -1.4248 -0.0077 23 1 -0.3633 -0.0055 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5091 26 1 1.9025 2.0874 -0.0004 27 1 5.9443 0.3061 1.6606 28 1 5.3755 -1.3190 2.1120 29 1 6.9873 -1.1096 1.3858 30 1 5.5636 0.1426 -1.7537 31 1 7.9343 -1.1822 -0.6080 32 1 6.9457 -1.8487 -1.9296 33 1 7.4461 0.1494 -3.3106 34 1 8.4344 0.8155 -1.9886 35 1 9.9296 -1.1584 -2.1108 36 1 8.9416 -1.8251 -3.4329 37 1 13.1580 0.7166 -6.6698 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184977558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:28 Heat of formation + Delta-G solvation = 23.251547 kcal Electronic energy + Delta-G solvation = -17012.694357 eV Core-core repulsion = 14235.252006 eV Total energy + Delta-G solvation = -2777.442351 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08521 -37.27196 -33.94457 -32.43668 -32.33835 -29.79497 -27.36526 -25.73246 -25.08149 -24.35356 -22.07713 -21.12492 -19.14292 -18.36347 -17.41165 -16.23407 -15.56186 -15.28798 -14.89562 -14.77491 -14.63224 -14.09561 -13.86896 -13.44265 -13.27235 -13.11659 -12.95647 -12.48153 -12.28332 -12.18698 -11.57550 -11.53348 -11.46144 -11.25185 -11.02940 -10.79121 -10.61386 -10.37687 -9.81500 -9.52138 -9.50281 -9.05668 -9.02519 -8.48177 -8.26657 -6.49352 -6.19754 -3.89847 0.38668 0.99912 1.43159 2.58720 3.23475 3.25015 3.29608 3.57913 3.81332 4.13165 4.25879 4.55510 4.62899 4.76080 4.99814 5.05453 5.08195 5.15881 5.30119 5.34932 5.40227 5.47206 5.49415 5.59146 5.69011 5.77030 5.89556 5.93295 6.11113 6.15780 6.36670 6.63400 6.75708 6.97335 7.30896 7.53745 7.62844 8.39147 9.26161 10.88357 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.041715 B = 0.002385 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.055882 B =11736.038845 C =11897.850865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.226 4.226 3 C 0.033 3.967 4 N -0.445 5.445 5 C 0.044 3.956 6 C 0.165 3.835 7 H 0.061 0.939 8 C -0.134 4.134 9 N -0.669 5.669 10 C 0.062 3.938 11 C -0.095 4.095 12 C -0.112 4.112 13 S -0.132 6.132 14 C -0.517 4.517 15 H 0.071 0.929 16 C 0.070 3.930 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 S 0.111 5.889 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.175 0.825 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.346 0.654 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.333 -3.765 14.219 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.347 4.347 3 C -0.118 4.118 4 N -0.158 5.158 5 C -0.235 4.235 6 C 0.051 3.949 7 H 0.079 0.921 8 C -0.193 4.193 9 N -0.302 5.302 10 C -0.069 4.069 11 C -0.134 4.134 12 C -0.261 4.261 13 S 0.096 5.904 14 C -0.665 4.665 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.199 1.199 22 S 0.366 5.634 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.192 0.808 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.801 -2.926 14.162 27.000 hybrid contribution 0.315 -1.730 -0.447 1.815 sum -22.486 -4.657 13.715 26.747 Atomic orbital electron populations 1.20231 0.86756 1.03484 1.02919 1.26029 1.01624 0.95027 1.12000 1.21817 0.86967 1.00127 1.02899 1.66220 1.17128 1.18376 1.14092 1.27162 1.00375 0.91481 1.04432 1.20115 0.83693 0.95006 0.96037 0.92107 1.21791 1.00792 1.03474 0.93273 1.60529 1.10420 1.40646 1.18565 1.22153 0.91911 0.94558 0.98266 1.21229 0.95628 0.98929 0.97567 1.23219 0.98986 1.01695 1.02202 1.84658 1.29766 1.24874 1.51075 1.22653 1.11671 1.02483 1.29676 0.91041 1.25020 0.97761 0.95880 0.95185 1.70019 1.34075 1.19364 1.27072 0.86225 0.80610 0.80414 0.78279 1.19983 1.20832 1.19934 1.84014 0.99052 1.11679 1.68702 0.90553 0.91120 0.90112 0.80796 0.90946 0.92658 0.91306 0.83492 0.90727 0.95275 0.91829 0.90536 0.92067 0.92372 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.42 36.01 0.38 -0.01 16 2 C -0.23 -1.88 6.60 -35.92 -0.24 -2.12 16 3 C 0.03 0.32 11.25 -19.18 -0.22 0.11 16 4 N -0.45 -5.42 10.50 -11.86 -0.12 -5.54 16 5 C 0.04 0.49 5.90 -13.45 -0.08 0.41 16 6 C 0.16 1.80 3.11 -68.86 -0.21 1.58 16 7 H 0.06 0.60 7.80 -51.93 -0.40 0.19 16 8 C -0.13 -1.37 9.40 37.15 0.35 -1.02 16 9 N -0.67 -8.54 6.27 -107.95 -0.68 -9.22 16 10 C 0.06 0.83 5.48 -3.83 -0.02 0.81 16 11 C -0.09 -1.58 5.48 -26.73 -0.15 -1.73 16 12 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 13 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 14 C -0.52 -15.00 9.50 30.94 0.29 -14.71 16 15 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 16 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 17 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 18 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 S 0.11 0.98 23.18 -107.50 -2.49 -1.52 16 23 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.18 1.32 8.06 -52.49 -0.42 0.89 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.68 7.45 -51.92 -0.39 0.29 16 30 H 0.35 4.52 8.35 -39.29 -0.33 4.19 16 31 H 0.07 0.98 7.44 -51.93 -0.39 0.59 16 32 H 0.03 0.37 8.06 -51.93 -0.42 -0.04 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 36 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -32.25 340.33 -10.24 -42.48 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.70 Total: 0.18 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 0.22 Total: -16.82 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.07 Total: -40.34 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -4.80 Total: -7.34 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.25 -10.24 -42.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184977558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.735 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds