Wall clock time and date at job start Tue Mar 31 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50705 * 124.90906 * 179.67999 * 5 4 3 7 7 H 1.09002 * 109.46673 * 195.04264 * 6 5 4 8 8 C 1.52994 * 109.46883 * 75.04566 * 6 5 4 9 9 N 1.46902 * 109.47240 * 315.03890 * 6 5 4 10 10 C 1.46893 * 110.99688 * 205.00324 * 9 6 5 11 11 C 1.53003 * 109.47026 * 180.02562 * 10 9 6 12 12 C 1.52999 * 109.47611 * 179.97438 * 11 10 9 13 13 S 1.80994 * 109.47537 * 179.97438 * 12 11 10 14 14 C 1.76199 * 100.00167 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00099 * 359.97438 * 14 13 12 16 16 C 1.38800 * 120.00232 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99617 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00104 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47362 * 59.99626 * 18 16 14 20 20 H 1.48503 * 109.46907 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47083 * 299.99625 * 18 16 14 22 22 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 23 23 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 24 24 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 25 25 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 26 26 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 27 27 H 1.09000 * 109.46855 * 299.98985 * 8 6 5 28 28 H 1.08992 * 109.48027 * 59.99830 * 8 6 5 29 29 H 1.09013 * 109.46668 * 180.02562 * 8 6 5 30 30 H 1.00898 * 110.99959 * 328.95865 * 9 6 5 31 31 H 1.09002 * 109.47586 * 300.00093 * 10 9 6 32 32 H 1.08999 * 109.47511 * 60.00259 * 10 9 6 33 33 H 1.08999 * 109.47294 * 299.99736 * 11 10 9 34 34 H 1.08999 * 109.46961 * 59.99681 * 11 10 9 35 35 H 1.09007 * 109.46956 * 300.00242 * 12 11 10 36 36 H 1.09005 * 109.46790 * 59.99288 * 12 11 10 37 37 H 0.97005 * 119.99593 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9245 -0.0057 7 1 5.3674 -1.9799 -0.2780 8 6 5.9584 -0.7493 1.3884 9 7 6.1391 -0.1567 -0.9809 10 6 7.2937 -0.9320 -1.4537 11 6 8.0863 -0.1011 -2.4648 12 6 9.2894 -0.9082 -2.9569 13 16 10.2266 0.0744 -4.1536 14 6 11.5141 -1.0638 -4.5427 15 1 11.5377 -2.0346 -4.0701 16 6 12.4986 -0.7123 -5.4558 17 7 12.4701 0.4711 -6.0314 18 14 13.8632 -1.9193 -5.8688 19 1 13.2733 -3.1582 -6.4364 20 1 14.7807 -1.3077 -6.8635 21 1 14.6202 -2.2516 -4.6352 22 16 2.5436 -1.4248 -0.0077 23 1 -0.3633 -0.0055 1.0277 24 1 -0.3633 -0.8872 -0.5186 25 1 -0.3633 0.8928 -0.5091 26 1 1.9025 2.0874 -0.0004 27 1 5.9443 0.3061 1.6606 28 1 5.3755 -1.3190 2.1120 29 1 6.9873 -1.1096 1.3858 30 1 5.5636 0.1426 -1.7537 31 1 7.9343 -1.1822 -0.6080 32 1 6.9457 -1.8487 -1.9296 33 1 7.4461 0.1494 -3.3106 34 1 8.4344 0.8155 -1.9886 35 1 9.9296 -1.1584 -2.1108 36 1 8.9416 -1.8251 -3.4329 37 1 13.1580 0.7166 -6.6698 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184977558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:28 Heat of formation + Delta-G solvation = 2.407626 kcal Electronic energy + Delta-G solvation = -17013.598217 eV Core-core repulsion = 14235.252006 eV Total energy + Delta-G solvation = -2778.346211 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82981 -38.24572 -35.05963 -34.58736 -33.12662 -30.85783 -28.05843 -27.81966 -26.19818 -25.27802 -22.91674 -22.43284 -19.95711 -19.49678 -19.08689 -17.20925 -16.88964 -16.56023 -16.30153 -15.91574 -15.77084 -15.37485 -14.86111 -14.70260 -14.13732 -13.82626 -13.77352 -13.67150 -13.46858 -13.25329 -12.98640 -12.90347 -12.85366 -12.48025 -12.37686 -12.30918 -12.11775 -11.73791 -11.38907 -11.12722 -10.55382 -10.31103 -10.20060 -9.74190 -9.44954 -8.66548 -8.36446 -6.13184 -0.31836 0.31896 0.72630 1.31602 1.41503 1.48305 1.74675 1.85561 2.29296 2.97504 3.05275 3.13409 3.35436 3.84585 4.02609 4.02971 4.12955 4.26407 4.30213 4.33568 4.37285 4.51873 4.71545 4.71671 4.77783 4.83674 4.88750 4.92759 5.04282 5.18304 5.25610 5.30299 5.34206 5.39929 5.96951 6.18553 6.29213 6.81793 7.05257 8.72783 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.041715 B = 0.002385 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.055882 B =11736.038845 C =11897.850865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.216 4.216 3 C 0.008 3.992 4 N -0.476 5.476 5 C 0.020 3.980 6 C 0.164 3.836 7 H 0.075 0.925 8 C -0.130 4.130 9 N -0.678 5.678 10 C 0.075 3.925 11 C -0.084 4.084 12 C -0.085 4.085 13 S -0.203 6.203 14 C -0.538 4.538 15 H 0.074 0.926 16 C 0.013 3.987 17 N -0.908 5.908 18 Si 0.996 3.004 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.264 1.264 22 S 0.138 5.862 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.189 0.811 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.343 0.657 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.434 -5.593 14.995 29.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.337 4.337 3 C -0.142 4.142 4 N -0.190 5.190 5 C -0.257 4.257 6 C 0.051 3.949 7 H 0.093 0.907 8 C -0.189 4.189 9 N -0.311 5.311 10 C -0.056 4.056 11 C -0.123 4.123 12 C -0.235 4.235 13 S 0.026 5.974 14 C -0.685 4.685 15 H 0.092 0.908 16 C -0.192 4.192 17 N -0.545 5.545 18 Si 0.817 3.183 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.189 1.189 22 S 0.393 5.607 23 H 0.108 0.892 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.206 0.794 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.913 -4.755 14.952 28.601 hybrid contribution 0.500 -1.142 -0.627 1.395 sum -23.413 -5.896 14.325 28.074 Atomic orbital electron populations 1.20392 0.84402 1.04602 1.04111 1.26484 1.03124 0.94378 1.09744 1.22095 0.86569 1.01366 1.04179 1.66196 1.18623 1.19407 1.14766 1.27121 1.01033 0.91846 1.05745 1.20166 0.83763 0.95390 0.95546 0.90686 1.21758 1.01248 1.02478 0.93435 1.60471 1.10642 1.41254 1.18716 1.21943 0.92009 0.94133 0.97512 1.21103 0.94450 0.98470 0.98232 1.23133 0.99166 1.01062 1.00127 1.84711 1.31126 1.27659 1.53953 1.23012 1.12512 1.02800 1.30217 0.90764 1.26113 1.00464 0.97890 0.94739 1.70164 1.35177 1.21447 1.27682 0.85044 0.76997 0.77840 0.78397 1.18842 1.20036 1.18850 1.83848 0.97839 1.11106 1.67926 0.89174 0.90212 0.88768 0.79445 0.92850 0.91013 0.91063 0.83848 0.89999 0.94070 0.92188 0.91736 0.91644 0.91765 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.42 71.24 0.74 0.16 16 2 C -0.22 -3.21 6.60 24.64 0.16 -3.05 16 3 C 0.01 0.15 11.25 83.66 0.94 1.09 16 4 N -0.48 -11.41 10.50 -191.44 -2.01 -13.42 16 5 C 0.02 0.43 5.90 88.52 0.52 0.95 16 6 C 0.16 3.38 3.11 44.17 0.14 3.52 16 7 H 0.08 1.32 7.80 -2.39 -0.02 1.31 16 8 C -0.13 -2.51 9.40 71.98 0.68 -1.84 16 9 N -0.68 -16.83 6.27 -495.45 -3.11 -19.93 16 10 C 0.07 1.91 5.48 86.31 0.47 2.38 16 11 C -0.08 -2.77 5.48 30.60 0.17 -2.60 16 12 C -0.09 -3.46 5.67 71.98 0.41 -3.05 16 13 S -0.20 -11.07 21.44 -56.49 -1.21 -12.28 16 14 C -0.54 -31.47 9.50 67.95 0.65 -30.83 16 15 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 16 C 0.01 0.73 5.49 84.86 0.47 1.20 16 17 N -0.91 -55.73 13.22 21.65 0.29 -55.45 16 18 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 S 0.14 2.19 23.18 -56.49 -1.31 0.88 16 23 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.19 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.31 7.45 -2.38 -0.02 1.30 16 30 H 0.34 8.84 8.35 -89.70 -0.75 8.09 16 31 H 0.08 1.99 7.44 -2.39 -0.02 1.98 16 32 H 0.04 0.97 8.06 -2.39 -0.02 0.95 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 Total: -1.00 -70.16 340.33 0.32 -69.84 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.31 Total: 16.10 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 5.34 Total: -32.07 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -4.83 Total: -88.80 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -2.52 Total: -11.40 kcal Total: -70.16 0.32 -69.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184977558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.246 kcal (2) G-P(sol) polarization free energy of solvation -70.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds