Wall clock time and date at job start Tue Mar 31 2020 06:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48497 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47154 * 300.00365 * 3 2 1 6 6 H 1.48495 * 109.46847 * 60.00285 * 3 2 1 7 7 C 1.37879 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47431 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47527 * 179.97438 * 11 10 9 13 13 C 1.81404 * 103.00143 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47098 * 179.97438 * 13 12 11 15 15 C 1.38233 * 120.00099 * 269.72914 * 14 13 12 16 16 C 1.38239 * 119.99655 * 179.76882 * 15 14 13 17 17 C 1.38228 * 120.00132 * 0.48003 * 16 15 14 18 18 C 1.50705 * 120.00130 * 179.77080 * 17 16 15 19 19 F 1.39890 * 109.47244 * 120.02207 * 18 17 16 20 20 F 1.39902 * 109.46945 * 240.02629 * 18 17 16 21 21 C 1.38237 * 120.00223 * 359.79707 * 17 16 15 22 22 C 1.38238 * 119.99946 * 359.94921 * 21 17 16 23 23 H 0.97001 * 120.00368 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47444 * 59.99994 * 9 7 2 25 25 H 1.08998 * 109.46931 * 300.00112 * 9 7 2 26 26 H 1.08996 * 109.47575 * 59.99888 * 10 9 7 27 27 H 1.08998 * 109.47082 * 299.99768 * 10 9 7 28 28 H 1.09007 * 109.47172 * 59.99713 * 11 10 9 29 29 H 1.09007 * 109.46944 * 300.00198 * 11 10 9 30 30 H 1.09002 * 109.47124 * 60.00087 * 13 12 11 31 31 H 1.09001 * 109.46975 * 300.00209 * 13 12 11 32 32 H 1.08003 * 119.99927 * 359.97438 * 15 14 13 33 33 H 1.08001 * 119.99208 * 180.25033 * 16 15 14 34 34 H 1.08999 * 109.46783 * 0.02562 * 18 17 16 35 35 H 1.07998 * 120.00143 * 179.97438 * 21 17 16 36 36 H 1.07991 * 120.00062 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 16 2.6592 -6.3658 -0.0007 13 6 1.5810 -7.8246 0.0010 14 6 2.4250 -9.0731 -0.0001 15 6 2.8057 -9.6490 -1.1977 16 6 3.5839 -10.7915 -1.1986 17 6 3.9731 -11.3637 -0.0020 18 6 4.8171 -12.6122 -0.0030 19 9 6.0255 -12.3587 0.6547 20 9 4.1329 -13.6382 0.6575 21 6 3.5876 -10.7910 1.1957 22 6 2.8138 -9.6455 1.1967 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6248 -2.5570 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6042 -0.8905 28 1 0.8534 -5.0451 -0.8897 29 1 0.8541 -5.0445 0.8904 30 1 0.9509 -7.8117 -0.8883 31 1 0.9528 -7.8110 0.8917 32 1 2.4979 -9.2044 -2.1326 33 1 3.8847 -11.2391 -2.1343 34 1 5.0192 -12.9132 -1.0309 35 1 3.8913 -11.2383 2.1306 36 1 2.5129 -9.1979 2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185643324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:20 Heat of formation + Delta-G solvation = -105.529411 kcal Electronic energy + Delta-G solvation = -18486.200346 eV Core-core repulsion = 15117.040495 eV Total energy + Delta-G solvation = -3369.159850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.31492 -47.30200 -39.69641 -34.49102 -33.77678 -32.05249 -31.38025 -28.93258 -27.49743 -25.05784 -23.38626 -23.21008 -21.44012 -20.24916 -17.89408 -17.69500 -17.53124 -16.59655 -16.01828 -15.60518 -15.49668 -14.74619 -14.62439 -14.59704 -14.25948 -13.96213 -13.84449 -13.67710 -13.23158 -12.96627 -12.73551 -12.56081 -12.29223 -11.77149 -11.69264 -11.42512 -11.20822 -10.94750 -10.91544 -10.54738 -9.97648 -9.83032 -9.36238 -9.31133 -9.16563 -8.99467 -8.39697 -7.51347 -6.04431 -4.06917 0.57492 1.02761 1.92067 2.78342 3.29387 3.34700 3.36929 3.38026 3.41758 3.79555 4.14764 4.39982 4.43412 4.50330 4.60033 4.69482 4.93684 5.04192 5.25224 5.29302 5.31663 5.45772 5.49916 5.58897 5.65460 5.91332 5.98919 6.08066 6.20673 6.51369 6.51514 6.67804 6.98225 7.60435 7.72016 7.94500 8.36302 8.99785 9.57549 11.06931 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.048576 B = 0.002206 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.274808 B =12690.574076 C =12917.910404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.075 4.075 12 S -0.264 6.264 13 C -0.058 4.058 14 C -0.041 4.041 15 C -0.106 4.106 16 C -0.085 4.085 17 C -0.174 4.174 18 C 0.314 3.686 19 F -0.200 7.200 20 F -0.201 7.201 21 C -0.079 4.079 22 C -0.104 4.104 23 H 0.260 0.740 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -26.129 -1.437 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.223 4.223 12 S -0.034 6.034 13 C -0.205 4.205 14 C -0.043 4.043 15 C -0.125 4.125 16 C -0.103 4.103 17 C -0.175 4.175 18 C 0.260 3.740 19 F -0.181 7.181 20 F -0.182 7.182 21 C -0.097 4.097 22 C -0.124 4.124 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.269 -25.971 -1.404 26.753 hybrid contribution -0.937 0.895 0.132 1.302 sum 5.332 -25.076 -1.272 25.668 Atomic orbital electron populations 1.69968 1.06077 1.26593 1.50886 1.25028 0.94875 0.99345 0.95241 0.86512 0.80160 0.83617 0.77599 1.19666 1.20977 1.20969 1.21257 0.93173 0.90830 1.50580 0.92477 1.19107 0.93794 0.90864 0.97400 1.21466 0.99171 0.91116 1.01626 1.23675 0.98904 0.95289 1.04436 1.87158 1.17923 1.00231 1.98089 1.22320 0.98952 0.93289 1.05952 1.19468 0.96906 0.94220 0.93681 1.21054 0.97957 0.95475 0.98035 1.20886 0.96949 0.95672 0.96783 1.20327 1.03459 0.98383 0.95378 1.20396 0.77014 0.83726 0.92865 1.93021 1.46511 1.94567 1.83984 1.93014 1.80250 1.61057 1.83920 1.20935 0.96138 0.95219 0.97380 1.21082 0.97829 0.95393 0.98095 0.93002 0.96419 0.96426 0.92363 0.92363 0.90469 0.90461 0.89032 0.89039 0.84893 0.85096 0.86507 0.85341 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.69 4.97 -27.89 -0.14 0.55 16 10 C -0.09 -1.94 5.16 -26.74 -0.14 -2.08 16 11 C -0.08 -1.25 5.94 37.16 0.22 -1.03 16 12 S -0.26 -3.92 21.72 -107.50 -2.33 -6.26 16 13 C -0.06 -0.64 6.07 36.01 0.22 -0.42 16 14 C -0.04 -0.43 5.14 -104.62 -0.54 -0.97 16 15 C -0.11 -0.97 9.70 -39.58 -0.38 -1.35 16 16 C -0.08 -0.67 9.67 -39.58 -0.38 -1.06 16 17 C -0.17 -1.53 5.37 -104.62 -0.56 -2.09 16 18 C 0.31 2.38 5.45 36.01 0.20 2.58 16 19 F -0.20 -1.93 17.26 2.25 0.04 -1.90 16 20 F -0.20 -1.85 17.26 2.25 0.04 -1.81 16 21 C -0.08 -0.75 9.60 -39.58 -0.38 -1.13 16 22 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 30 H 0.09 0.91 8.08 -51.92 -0.42 0.49 16 31 H 0.09 0.92 8.09 -51.92 -0.42 0.50 16 32 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 33 H 0.13 0.65 7.95 -52.49 -0.42 0.23 16 34 H 0.12 0.48 7.88 -51.93 -0.41 0.07 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -31.08 332.79 -9.22 -40.31 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -5.01 Total: -4.07 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -2.68 Total: -21.90 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -2.33 Total: -6.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.08 -9.22 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185643324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.224 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds