Wall clock time and date at job start Tue Mar 31 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48497 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47154 * 300.00365 * 3 2 1 6 6 H 1.48495 * 109.46847 * 60.00285 * 3 2 1 7 7 C 1.37879 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99720 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47431 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.47527 * 179.97438 * 11 10 9 13 13 C 1.81404 * 103.00143 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47098 * 179.97438 * 13 12 11 15 15 C 1.38233 * 120.00099 * 269.72914 * 14 13 12 16 16 C 1.38239 * 119.99655 * 179.76882 * 15 14 13 17 17 C 1.38228 * 120.00132 * 0.48003 * 16 15 14 18 18 C 1.50705 * 120.00130 * 179.77080 * 17 16 15 19 19 F 1.39890 * 109.47244 * 120.02207 * 18 17 16 20 20 F 1.39902 * 109.46945 * 240.02629 * 18 17 16 21 21 C 1.38237 * 120.00223 * 359.79707 * 17 16 15 22 22 C 1.38238 * 119.99946 * 359.94921 * 21 17 16 23 23 H 0.97001 * 120.00368 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47444 * 59.99994 * 9 7 2 25 25 H 1.08998 * 109.46931 * 300.00112 * 9 7 2 26 26 H 1.08996 * 109.47575 * 59.99888 * 10 9 7 27 27 H 1.08998 * 109.47082 * 299.99768 * 10 9 7 28 28 H 1.09007 * 109.47172 * 59.99713 * 11 10 9 29 29 H 1.09007 * 109.46944 * 300.00198 * 11 10 9 30 30 H 1.09002 * 109.47124 * 60.00087 * 13 12 11 31 31 H 1.09001 * 109.46975 * 300.00209 * 13 12 11 32 32 H 1.08003 * 119.99927 * 359.97438 * 15 14 13 33 33 H 1.08001 * 119.99208 * 180.25033 * 16 15 14 34 34 H 1.08999 * 109.46783 * 0.02562 * 18 17 16 35 35 H 1.07998 * 120.00143 * 179.97438 * 21 17 16 36 36 H 1.07991 * 120.00062 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 16 2.6592 -6.3658 -0.0007 13 6 1.5810 -7.8246 0.0010 14 6 2.4250 -9.0731 -0.0001 15 6 2.8057 -9.6490 -1.1977 16 6 3.5839 -10.7915 -1.1986 17 6 3.9731 -11.3637 -0.0020 18 6 4.8171 -12.6122 -0.0030 19 9 6.0255 -12.3587 0.6547 20 9 4.1329 -13.6382 0.6575 21 6 3.5876 -10.7910 1.1957 22 6 2.8138 -9.6455 1.1967 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6248 -2.5570 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6042 -0.8905 28 1 0.8534 -5.0451 -0.8897 29 1 0.8541 -5.0445 0.8904 30 1 0.9509 -7.8117 -0.8883 31 1 0.9528 -7.8110 0.8917 32 1 2.4979 -9.2044 -2.1326 33 1 3.8847 -11.2391 -2.1343 34 1 5.0192 -12.9132 -1.0309 35 1 3.8913 -11.2383 2.1306 36 1 2.5129 -9.1979 2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185643324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:19 Heat of formation + Delta-G solvation = -119.909267 kcal Electronic energy + Delta-G solvation = -18486.823903 eV Core-core repulsion = 15117.040495 eV Total energy + Delta-G solvation = -3369.783407 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.95556 -47.95968 -40.37617 -36.37226 -34.50101 -34.05405 -32.04827 -29.76356 -29.29658 -25.89897 -25.16594 -23.88532 -22.36524 -21.82179 -18.62277 -18.49537 -18.30343 -18.17328 -17.22978 -16.57484 -16.42983 -16.37637 -16.01142 -15.42111 -15.20113 -14.90761 -14.51452 -14.46399 -14.34640 -14.10376 -13.98918 -13.72319 -13.40296 -13.33276 -12.88812 -12.76875 -12.73849 -12.35181 -12.10054 -11.84586 -11.66797 -11.49430 -11.22521 -10.90757 -10.57974 -9.98552 -9.83317 -8.68484 -8.22512 -6.33367 -0.20754 0.35204 0.88392 1.39633 1.40094 1.53549 1.63605 2.40145 2.67094 2.76899 3.10950 3.27584 3.56406 3.62556 3.83637 3.98883 4.03520 4.09526 4.09895 4.24650 4.36682 4.52970 4.58612 4.58739 4.79181 4.81023 4.96631 5.00356 5.12340 5.22520 5.32223 5.48028 5.49380 5.67106 5.81159 5.84329 6.21323 6.82498 7.35927 8.89360 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.048576 B = 0.002206 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.274808 B =12690.574076 C =12917.910404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.069 4.069 12 S -0.285 6.285 13 C -0.043 4.043 14 C -0.060 4.060 15 C -0.112 4.112 16 C -0.080 4.080 17 C -0.179 4.179 18 C 0.310 3.690 19 F -0.214 7.214 20 F -0.212 7.212 21 C -0.094 4.094 22 C -0.114 4.114 23 H 0.264 0.736 24 H -0.002 1.002 25 H -0.003 1.003 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.146 0.854 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.131 0.869 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 -27.209 -2.360 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.217 4.217 12 S -0.055 6.055 13 C -0.190 4.190 14 C -0.061 4.061 15 C -0.131 4.131 16 C -0.098 4.098 17 C -0.181 4.181 18 C 0.257 3.743 19 F -0.195 7.195 20 F -0.193 7.193 21 C -0.113 4.113 22 C -0.134 4.134 23 H 0.073 0.927 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.149 0.851 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.195 -27.049 -2.324 28.086 hybrid contribution -1.227 1.099 0.422 1.701 sum 5.967 -25.950 -1.902 26.695 Atomic orbital electron populations 1.70084 1.07687 1.27802 1.51603 1.25960 0.95811 1.03306 0.94662 0.85399 0.79012 0.78765 0.77892 1.18795 1.20205 1.20262 1.21691 0.93523 0.92365 1.50654 0.92398 1.18983 0.94169 0.92354 0.95325 1.21161 0.98008 0.91644 1.01161 1.23377 0.98861 0.94550 1.04926 1.87157 1.18707 1.01472 1.98191 1.22356 0.98321 0.91225 1.07122 1.19507 0.97904 0.94266 0.94425 1.21328 0.97830 0.95880 0.98092 1.21259 0.95730 0.94936 0.97877 1.20609 1.03237 0.98800 0.95454 1.20835 0.76055 0.82976 0.94437 1.92992 1.47361 1.94651 1.84525 1.92991 1.80511 1.61450 1.84398 1.21113 0.96507 0.95428 0.98213 1.21200 0.98105 0.95758 0.98341 0.92670 0.98382 0.98503 0.92844 0.92677 0.89903 0.90122 0.87628 0.88192 0.83577 0.81621 0.82203 0.85086 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.60 4.97 29.85 0.15 1.74 16 10 C -0.08 -3.37 5.16 30.59 0.16 -3.21 16 11 C -0.07 -2.29 5.94 71.98 0.43 -1.86 16 12 S -0.29 -8.23 21.72 -56.49 -1.23 -9.45 16 13 C -0.04 -0.88 6.07 71.24 0.43 -0.45 16 14 C -0.06 -1.15 5.14 -19.86 -0.10 -1.25 16 15 C -0.11 -1.78 9.70 22.27 0.22 -1.57 16 16 C -0.08 -1.03 9.67 22.27 0.22 -0.82 16 17 C -0.18 -2.78 5.37 -19.87 -0.11 -2.89 16 18 C 0.31 3.97 5.45 71.24 0.39 4.36 16 19 F -0.21 -3.82 17.26 44.97 0.78 -3.05 16 20 F -0.21 -3.55 17.26 44.97 0.78 -2.77 16 21 C -0.09 -1.72 9.60 22.27 0.21 -1.50 16 22 C -0.11 -2.18 9.70 22.27 0.22 -1.97 16 23 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 24 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.11 1.87 8.08 -2.39 -0.02 1.85 16 31 H 0.10 1.88 8.09 -2.39 -0.02 1.86 16 32 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.17 0.90 7.95 -2.91 -0.02 0.88 16 34 H 0.16 0.67 7.88 -2.39 -0.02 0.66 16 35 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.14 2.35 8.06 -2.92 -0.02 2.33 16 Total: -1.00 -67.32 332.79 6.60 -60.72 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.06 Total: 4.06 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 2.90 Total: -39.85 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.28 Total: -56.03 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.55 Total: -5.82 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.23 Total: -9.45 kcal Total: -67.32 6.60 -60.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185643324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.184 kcal (2) G-P(sol) polarization free energy of solvation -67.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds