Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30216 * 126.78895 * 2 1 4 4 O 1.20923 * 111.64257 * 180.28132 * 3 2 1 5 5 C 1.34068 * 111.55182 * 359.70605 * 4 3 2 6 6 Cl 1.73601 * 126.79634 * 180.02562 * 5 4 3 7 7 C 1.35673 * 106.40806 * 359.97438 * 5 4 3 8 8 C 1.50704 * 128.01762 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47036 * 90.01895 * 8 7 5 10 10 C 1.50703 * 109.46585 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00336 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99852 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00312 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46824 * 324.99495 * 13 12 10 15 15 C 1.52998 * 109.47488 * 84.99823 * 13 12 10 16 16 C 1.50704 * 109.47156 * 205.00023 * 13 12 10 17 17 H 1.07992 * 120.00120 * 356.68518 * 16 13 12 18 18 C 1.37875 * 119.99522 * 176.68397 * 16 13 12 19 19 N 1.31513 * 120.00501 * 352.38401 * 18 16 13 20 20 Si 1.86806 * 119.99715 * 172.66612 * 18 16 13 21 21 H 1.48497 * 109.47165 * 264.79730 * 20 18 16 22 22 H 1.48503 * 109.46939 * 24.79275 * 20 18 16 23 23 H 1.48498 * 109.47436 * 144.79640 * 20 18 16 24 24 H 1.09000 * 109.47749 * 270.20570 * 1 2 3 25 25 H 1.09007 * 109.47037 * 30.20593 * 1 2 3 26 26 H 1.08998 * 109.47557 * 150.19835 * 1 2 3 27 27 H 1.09000 * 109.46522 * 330.02111 * 8 7 5 28 28 H 1.08992 * 109.47373 * 210.02485 * 8 7 5 29 29 H 1.09000 * 109.47289 * 60.00685 * 9 8 7 30 30 H 1.09000 * 109.47408 * 299.99873 * 9 8 7 31 31 H 0.97006 * 119.99961 * 0.02562 * 12 10 9 32 32 H 1.09001 * 109.47019 * 297.81934 * 15 13 12 33 33 H 1.09001 * 109.47267 * 57.81201 * 15 13 12 34 34 H 1.08995 * 109.47232 * 177.81999 * 15 13 12 35 35 H 0.96997 * 120.00137 * 180.27656 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0428 0.0000 4 8 3.4541 0.7269 -0.0055 5 6 3.6036 -0.6054 -0.0036 6 17 5.1011 -1.4836 -0.0091 7 6 2.3531 -1.1315 0.0046 8 6 1.9579 -2.5858 0.0104 9 6 1.8317 -3.0742 1.4548 10 6 1.4371 -4.5286 1.4605 11 8 1.2734 -5.1167 0.4125 12 7 1.2661 -5.1759 2.6303 13 6 0.8830 -6.5899 2.6359 14 1 0.2153 -6.7888 1.7976 15 6 2.1361 -7.4583 2.5070 16 6 0.1778 -6.9142 3.9276 17 1 0.0770 -6.1583 4.6923 18 6 -0.3386 -8.1760 4.1331 19 7 -0.3503 -9.0499 3.1504 20 14 -1.0291 -8.6416 5.8052 21 1 0.0191 -9.3320 6.5988 22 1 -1.4637 -7.4149 6.5204 23 1 -2.1916 -9.5481 5.6258 24 1 -0.3634 0.0037 1.0276 25 1 -0.3633 0.8882 -0.5171 26 1 -0.3634 -0.8917 -0.5107 27 1 2.7188 -3.1710 -0.5059 28 1 1.0012 -2.7043 -0.4982 29 1 1.0707 -2.4890 1.9711 30 1 2.7885 -2.9557 1.9634 31 1 1.3966 -4.7055 3.4685 32 1 2.6250 -7.2516 1.5550 33 1 2.8210 -7.2314 3.3239 34 1 1.8549 -8.5105 2.5501 35 1 -0.7173 -9.9362 3.2938 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194628667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = -16.925535 kcal Electronic energy + Delta-G solvation = -19917.641263 eV Core-core repulsion = 16557.827031 eV Total energy + Delta-G solvation = -3359.814232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.14813 -40.55882 -38.28341 -37.08917 -36.49466 -34.31112 -34.11524 -31.94008 -30.60415 -29.68238 -27.29928 -26.37947 -23.22047 -22.54283 -22.09796 -21.02561 -19.09387 -18.78932 -18.68939 -17.43744 -17.10956 -16.75915 -16.05460 -15.95169 -15.02950 -14.79471 -14.37458 -14.27967 -14.04652 -13.90604 -13.70891 -13.62304 -13.52010 -13.24072 -12.93095 -12.88688 -12.80676 -12.65182 -12.32083 -12.19071 -12.11268 -11.80611 -11.10865 -11.01887 -10.68780 -10.54532 -10.24874 -9.69667 -8.17931 -6.31948 0.00994 0.09697 0.97525 1.46119 1.46948 1.57434 1.89454 2.37112 2.48955 2.72389 3.01631 3.14495 3.49343 3.74380 3.85445 4.06334 4.29165 4.34246 4.58624 4.67329 4.69880 4.77625 4.78412 4.93009 5.01882 5.06206 5.09600 5.25508 5.47012 5.64764 5.68536 5.93650 6.08332 6.77323 6.96325 7.02682 7.35515 7.62613 8.90765 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.003379 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.144909 B = 8285.330936 C = 8784.739244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.038 3.962 3 N -0.369 5.369 4 O 0.099 5.901 5 C 0.000 4.000 6 Cl 0.060 6.940 7 C -0.163 4.163 8 C -0.023 4.023 9 C -0.122 4.122 10 C 0.499 3.501 11 O -0.599 6.599 12 N -0.707 5.707 13 C 0.267 3.733 14 H 0.002 0.998 15 C -0.129 4.129 16 C -0.546 4.546 17 H 0.074 0.926 18 C 0.016 3.984 19 N -0.919 5.919 20 Si 0.968 3.032 21 H -0.274 1.274 22 H -0.261 1.261 23 H -0.288 1.288 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.405 0.595 32 H 0.016 0.984 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 18.133 -3.192 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 N -0.078 5.078 4 O 0.034 5.966 5 C -0.090 4.090 6 Cl 0.089 6.911 7 C -0.168 4.168 8 C -0.061 4.061 9 C -0.161 4.161 10 C 0.287 3.713 11 O -0.481 6.481 12 N -0.356 5.356 13 C 0.164 3.836 14 H 0.020 0.980 15 C -0.188 4.188 16 C -0.584 4.584 17 H 0.092 0.908 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.793 3.207 21 H -0.200 1.200 22 H -0.185 1.185 23 H -0.214 1.214 24 H 0.118 0.882 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.240 0.760 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.374 18.761 -3.953 20.204 hybrid contribution -0.018 -1.370 0.867 1.622 sum 6.356 17.391 -3.086 18.771 Atomic orbital electron populations 1.20422 0.83294 1.05104 1.05101 1.23804 1.00365 0.87296 1.00613 1.73946 0.88808 1.23672 1.21331 1.84886 1.22147 1.21028 1.68495 1.24746 0.91636 0.84739 1.07923 1.98474 1.27528 1.68528 1.96594 1.20872 0.89924 0.98117 1.07894 1.19591 1.03786 0.86373 0.96375 1.21587 1.05235 0.90628 0.98677 1.21252 0.76524 0.90124 0.83419 1.90648 1.53844 1.70513 1.33099 1.46291 1.68184 1.12763 1.08362 1.18329 0.92058 0.77021 0.96218 0.97960 1.21836 0.97954 1.01550 0.97491 1.21556 1.37282 0.97875 1.01712 0.90786 1.25779 0.95743 0.96395 1.00533 1.70113 1.46050 1.06574 1.32978 0.85396 0.77669 0.78388 0.79270 1.19971 1.18501 1.21415 0.88249 0.89361 0.88614 0.90181 0.89190 0.86574 0.87193 0.75954 0.96451 0.93615 0.93024 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.39 71.24 0.74 -0.44 16 2 C 0.04 0.76 7.32 43.55 0.32 1.08 16 3 N -0.37 -8.56 12.07 -49.42 -0.60 -9.16 16 4 O 0.10 2.23 11.20 71.37 0.80 3.03 16 5 C 0.00 -0.01 8.12 67.23 0.55 0.54 16 6 Cl 0.06 1.10 29.23 -2.72 -0.08 1.02 16 7 C -0.16 -3.40 5.58 -19.71 -0.11 -3.51 16 8 C -0.02 -0.53 4.90 29.85 0.15 -0.38 16 9 C -0.12 -2.83 5.68 29.85 0.17 -2.66 16 10 C 0.50 17.98 7.79 87.66 0.68 18.66 16 11 O -0.60 -27.16 15.64 -3.03 -0.05 -27.20 16 12 N -0.71 -27.39 5.07 -446.09 -2.26 -29.65 16 13 C 0.27 13.43 2.45 44.25 0.11 13.54 16 14 H 0.00 0.15 7.57 -2.39 -0.02 0.13 16 15 C -0.13 -6.32 9.32 71.98 0.67 -5.65 16 16 C -0.55 -28.15 8.69 25.60 0.22 -27.93 16 17 H 0.07 3.54 7.73 -2.91 -0.02 3.52 16 18 C 0.02 0.83 5.21 84.65 0.44 1.27 16 19 N -0.92 -52.49 11.92 21.45 0.26 -52.23 16 20 Si 0.97 41.22 29.54 68.60 2.03 43.25 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 24 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.10 1.26 7.65 -2.39 -0.02 1.24 16 27 H 0.08 2.00 8.10 -2.39 -0.02 1.98 16 28 H 0.09 2.11 7.61 -2.39 -0.02 2.09 16 29 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 31 H 0.41 12.92 8.53 -92.70 -0.79 12.13 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.77 6.60 -2.39 -0.02 2.75 16 35 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -66.14 322.40 4.36 -61.78 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.33 Total: 14.65 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 3.94 Total: -5.48 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -2.60 Total: -91.04 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.75 Total: -24.17 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: 1.10 SS G_CDS: -0.08 Total: 1.02 kcal Total: -66.14 4.36 -61.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194628667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.854 kcal (2) G-P(sol) polarization free energy of solvation -66.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds