Wall clock time and date at job start Tue Mar 31 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31340 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48503 * 109.46842 * 270.00350 * 3 2 1 5 5 H 1.48495 * 109.46942 * 30.00078 * 3 2 1 6 6 H 1.48502 * 109.47098 * 150.00479 * 3 2 1 7 7 C 1.39031 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00634 * 205.66372 * 7 2 1 9 9 N 1.36854 * 119.99535 * 25.65890 * 7 2 1 10 10 C 1.34782 * 120.00356 * 43.39023 * 9 7 2 11 11 O 1.21551 * 119.99433 * 2.05813 * 10 9 7 12 12 C 1.47956 * 120.00341 * 182.06056 * 10 9 7 13 13 C 1.40015 * 120.91725 * 26.39178 * 12 10 9 14 14 C 1.37986 * 119.05174 * 179.73420 * 13 12 10 15 15 N 1.31906 * 120.94912 * 0.54883 * 14 13 12 16 16 C 1.31984 * 122.03396 * 359.72573 * 15 14 13 17 17 F 1.35103 * 119.58717 * 180.02562 * 16 15 14 18 18 C 1.38477 * 120.83475 * 359.97438 * 16 15 14 19 19 C 1.39715 * 119.99964 * 223.38850 * 9 7 2 20 20 C 1.38971 * 120.07882 * 49.71602 * 19 9 7 21 21 C 1.38082 * 119.91743 * 179.70357 * 20 19 9 22 22 C 1.38308 * 120.07942 * 0.29383 * 21 20 19 23 23 C 1.38300 * 120.16204 * 359.97438 * 22 21 20 24 24 C 1.38074 * 120.08138 * 0.02562 * 23 22 21 25 25 H 0.96996 * 120.00389 * 4.91908 * 1 2 3 26 26 H 1.08001 * 120.47200 * 359.97438 * 13 12 10 27 27 H 1.08008 * 119.52730 * 180.29508 * 14 13 12 28 28 H 1.07998 * 120.51607 * 179.97438 * 18 16 15 29 29 H 1.07998 * 120.04292 * 359.97438 * 20 19 9 30 30 H 1.08008 * 119.95855 * 180.28150 * 21 20 19 31 31 H 1.08002 * 119.91635 * 180.02562 * 22 21 20 32 32 H 1.08004 * 119.96472 * 180.02562 * 23 22 21 33 33 H 1.08001 * 120.04571 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4948 2.0465 -1.4001 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4402 0.6999 7 6 2.0087 -1.2040 -0.0005 8 1 3.0087 -1.2503 0.4045 9 7 1.4256 -2.3305 -0.5143 10 6 0.7408 -2.2663 -1.6734 11 8 0.6726 -1.2160 -2.2815 12 6 0.0720 -3.4740 -2.2055 13 6 -0.3461 -4.5006 -1.3501 14 6 -0.9710 -5.6075 -1.8872 15 7 -1.1667 -5.7117 -3.1875 16 6 -0.7841 -4.7711 -4.0307 17 9 -1.0100 -4.9289 -5.3533 18 6 -0.1550 -3.6241 -3.5767 19 6 1.5403 -3.5472 0.1628 20 6 1.2480 -3.6197 1.5195 21 6 1.3565 -4.8252 2.1839 22 6 1.7615 -5.9585 1.5023 23 6 2.0586 -5.8890 0.1534 24 6 1.9523 -4.6870 -0.5177 25 1 -0.4850 0.8369 -0.0720 26 1 -0.1853 -4.4255 -0.2848 27 1 -1.3010 -6.4018 -1.2340 28 1 0.1563 -2.8579 -4.2713 29 1 0.9321 -2.7351 2.0525 30 1 1.1251 -4.8832 3.2374 31 1 1.8451 -6.9001 2.0245 32 1 2.3741 -6.7760 -0.3759 33 1 2.1848 -4.6333 -1.5710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195331897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:35 Heat of formation + Delta-G solvation = 17.857880 kcal Electronic energy + Delta-G solvation = -22372.412949 eV Core-core repulsion = 18893.079584 eV Total energy + Delta-G solvation = -3479.333365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.76830 -40.66487 -38.87455 -37.71405 -34.60101 -32.95292 -31.77418 -30.84150 -30.13238 -28.83901 -25.93782 -23.84223 -23.26741 -22.19240 -21.77539 -20.09564 -18.07644 -17.62321 -16.83084 -16.05898 -15.94684 -15.82800 -15.50962 -15.23802 -14.42037 -14.32255 -14.02737 -13.79163 -13.43168 -13.19818 -12.93358 -12.82243 -12.79410 -12.35868 -11.79867 -11.41059 -11.27505 -11.00804 -10.96437 -10.62312 -10.42433 -9.69566 -9.56892 -9.29921 -8.94504 -8.75333 -8.57102 -8.23643 -7.28372 -6.53833 -4.25137 1.03029 1.15297 1.80910 1.90156 3.16090 3.24758 3.27617 3.54335 3.72944 3.98544 4.15030 4.31598 4.41435 4.86562 5.00073 5.05351 5.19660 5.26542 5.35606 5.39109 5.57629 5.75742 5.87844 5.92413 5.99000 6.06366 6.32231 6.39917 6.49593 6.82308 6.85232 6.97716 7.06602 7.27611 7.40625 7.82580 7.92180 8.52442 8.67203 9.16317 9.67754 10.52534 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014277 B = 0.007873 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.751282 B = 3555.438540 C = 5117.779329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.517 3.483 11 O -0.510 6.510 12 C -0.035 4.035 13 C -0.149 4.149 14 C 0.121 3.879 15 N -0.513 5.513 16 C 0.292 3.708 17 F -0.118 7.118 18 C -0.153 4.153 19 C 0.161 3.839 20 C -0.132 4.132 21 C -0.104 4.104 22 C -0.159 4.159 23 C -0.104 4.104 24 C -0.156 4.156 25 H 0.274 0.726 26 H 0.158 0.842 27 H 0.166 0.834 28 H 0.152 0.848 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -9.912 1.465 10.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.132 4.132 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.481 4.481 8 H 0.111 0.889 9 N -0.100 5.100 10 C 0.306 3.694 11 O -0.386 6.386 12 C -0.046 4.046 13 C -0.169 4.169 14 C -0.034 4.034 15 N -0.228 5.228 16 C 0.138 3.862 17 F -0.097 7.097 18 C -0.176 4.176 19 C 0.066 3.934 20 C -0.152 4.152 21 C -0.123 4.123 22 C -0.178 4.178 23 C -0.123 4.123 24 C -0.176 4.176 25 H 0.084 0.916 26 H 0.175 0.825 27 H 0.183 0.817 28 H 0.169 0.831 29 H 0.149 0.851 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.087 -9.860 0.788 9.892 hybrid contribution 0.607 1.455 0.045 1.577 sum 0.694 -8.405 0.833 8.475 Atomic orbital electron populations 1.69885 1.06982 1.29234 1.38909 1.25312 0.94732 1.00165 0.93015 0.86154 0.79650 0.81311 0.78855 1.19727 1.20955 1.19302 1.19172 0.98737 0.85250 1.44938 0.88948 1.40959 1.46504 1.05959 1.16533 1.17864 0.83500 0.86900 0.81152 1.90643 1.60410 1.30016 1.57548 1.20705 0.95602 0.95422 0.92888 1.23036 0.97202 0.93685 1.03007 1.22321 0.94965 0.97275 0.88852 1.66799 1.20686 1.30211 1.05140 1.17902 0.97548 0.91680 0.79066 1.91590 1.92637 1.95723 1.29738 1.21824 1.01317 0.97906 0.96518 1.18362 0.95780 0.86695 0.92567 1.21211 1.01456 0.98347 0.94218 1.20977 0.99505 0.92490 0.99327 1.20902 1.04170 0.98157 0.94558 1.20781 1.00313 0.96725 0.94487 1.21121 1.03314 0.93116 1.00076 0.91601 0.82509 0.81719 0.83063 0.85075 0.86513 0.86863 0.86672 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.44 12.30 55.50 0.68 -21.75 16 2 C 0.08 2.13 4.13 -17.47 -0.07 2.06 16 3 Si 0.91 20.50 29.63 -169.99 -5.04 15.47 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.36 -9.14 8.57 -15.02 -0.13 -9.27 16 8 H 0.09 2.31 7.95 -52.49 -0.42 1.89 16 9 N -0.39 -9.21 2.65 -59.94 -0.16 -9.37 16 10 C 0.52 12.58 6.66 -12.28 -0.08 12.50 16 11 O -0.51 -14.17 14.80 5.32 0.08 -14.09 16 12 C -0.03 -0.70 4.59 -104.67 -0.48 -1.18 16 13 C -0.15 -2.57 6.60 -39.01 -0.26 -2.83 16 14 C 0.12 1.83 11.17 -17.61 -0.20 1.64 16 15 N -0.51 -8.63 10.35 -13.66 -0.14 -8.77 16 16 C 0.29 5.07 8.41 -17.40 -0.15 4.93 16 17 F -0.12 -1.96 17.29 2.25 0.04 -1.92 16 18 C -0.15 -2.83 9.67 -38.91 -0.38 -3.21 16 19 C 0.16 3.18 3.46 -83.72 -0.29 2.89 16 20 C -0.13 -2.39 8.98 -39.37 -0.35 -2.74 16 21 C -0.10 -1.50 10.04 -39.61 -0.40 -1.90 16 22 C -0.16 -2.08 10.04 -39.53 -0.40 -2.48 16 23 C -0.10 -1.45 9.94 -39.62 -0.39 -1.85 16 24 C -0.16 -2.64 6.03 -39.36 -0.24 -2.88 16 25 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.16 2.75 4.60 -52.49 -0.24 2.51 16 27 H 0.17 1.90 8.06 -52.48 -0.42 1.47 16 28 H 0.15 2.72 7.95 -52.49 -0.42 2.31 16 29 H 0.13 2.59 7.92 -52.49 -0.42 2.17 16 30 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 31 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.11 1.98 7.12 -52.49 -0.37 1.60 16 LS Contribution 292.69 15.07 4.41 4.41 Total: -1.00 -29.37 292.69 -6.62 -35.99 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.69 Total: 4.36 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.81 Total: -4.32 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.38 Total: -39.89 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.08 Total: -14.09 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.04 Total: 15.47 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.37 -6.62 -35.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195331897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.850 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds