Wall clock time and date at job start Tue Mar 31 2020 05:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31340 * 1 3 3 Si 1.86804 * 119.99959 * 2 1 4 4 H 1.48503 * 109.46842 * 270.00350 * 3 2 1 5 5 H 1.48495 * 109.46942 * 30.00078 * 3 2 1 6 6 H 1.48502 * 109.47098 * 150.00479 * 3 2 1 7 7 C 1.39031 * 120.00512 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00634 * 205.66372 * 7 2 1 9 9 N 1.36854 * 119.99535 * 25.65890 * 7 2 1 10 10 C 1.34782 * 120.00356 * 43.39023 * 9 7 2 11 11 O 1.21551 * 119.99433 * 2.05813 * 10 9 7 12 12 C 1.47956 * 120.00341 * 182.06056 * 10 9 7 13 13 C 1.40015 * 120.91725 * 26.39178 * 12 10 9 14 14 C 1.37986 * 119.05174 * 179.73420 * 13 12 10 15 15 N 1.31906 * 120.94912 * 0.54883 * 14 13 12 16 16 C 1.31984 * 122.03396 * 359.72573 * 15 14 13 17 17 F 1.35103 * 119.58717 * 180.02562 * 16 15 14 18 18 C 1.38477 * 120.83475 * 359.97438 * 16 15 14 19 19 C 1.39715 * 119.99964 * 223.38850 * 9 7 2 20 20 C 1.38971 * 120.07882 * 49.71602 * 19 9 7 21 21 C 1.38082 * 119.91743 * 179.70357 * 20 19 9 22 22 C 1.38308 * 120.07942 * 0.29383 * 21 20 19 23 23 C 1.38300 * 120.16204 * 359.97438 * 22 21 20 24 24 C 1.38074 * 120.08138 * 0.02562 * 23 22 21 25 25 H 0.96996 * 120.00389 * 4.91908 * 1 2 3 26 26 H 1.08001 * 120.47200 * 359.97438 * 13 12 10 27 27 H 1.08008 * 119.52730 * 180.29508 * 14 13 12 28 28 H 1.07998 * 120.51607 * 179.97438 * 18 16 15 29 29 H 1.07998 * 120.04292 * 359.97438 * 20 19 9 30 30 H 1.08008 * 119.95855 * 180.28150 * 21 20 19 31 31 H 1.08002 * 119.91635 * 180.02562 * 22 21 20 32 32 H 1.08004 * 119.96472 * 180.02562 * 23 22 21 33 33 H 1.08001 * 120.04571 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4948 2.0465 -1.4001 5 1 1.4449 2.6526 0.7000 6 1 3.5450 1.4402 0.6999 7 6 2.0087 -1.2040 -0.0005 8 1 3.0087 -1.2503 0.4045 9 7 1.4256 -2.3305 -0.5143 10 6 0.7408 -2.2663 -1.6734 11 8 0.6726 -1.2160 -2.2815 12 6 0.0720 -3.4740 -2.2055 13 6 -0.3461 -4.5006 -1.3501 14 6 -0.9710 -5.6075 -1.8872 15 7 -1.1667 -5.7117 -3.1875 16 6 -0.7841 -4.7711 -4.0307 17 9 -1.0100 -4.9289 -5.3533 18 6 -0.1550 -3.6241 -3.5767 19 6 1.5403 -3.5472 0.1628 20 6 1.2480 -3.6197 1.5195 21 6 1.3565 -4.8252 2.1839 22 6 1.7615 -5.9585 1.5023 23 6 2.0586 -5.8890 0.1534 24 6 1.9523 -4.6870 -0.5177 25 1 -0.4850 0.8369 -0.0720 26 1 -0.1853 -4.4255 -0.2848 27 1 -1.3010 -6.4018 -1.2340 28 1 0.1563 -2.8579 -4.2713 29 1 0.9321 -2.7351 2.0525 30 1 1.1251 -4.8832 3.2374 31 1 1.8451 -6.9001 2.0245 32 1 2.3741 -6.7760 -0.3759 33 1 2.1848 -4.6333 -1.5710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195331897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:35 Heat of formation + Delta-G solvation = 0.434492 kcal Electronic energy + Delta-G solvation = -22373.168484 eV Core-core repulsion = 18893.079584 eV Total energy + Delta-G solvation = -3480.088900 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.12896 -42.16369 -40.28154 -39.28578 -36.31457 -34.60191 -33.43255 -32.20331 -31.42558 -30.26465 -27.69826 -25.45229 -24.64332 -23.55091 -23.10401 -21.68338 -19.66495 -19.19578 -18.23887 -17.55416 -17.35626 -17.21711 -17.05654 -16.78533 -16.06723 -15.84270 -15.45425 -15.21511 -14.93600 -14.61118 -14.43377 -14.28018 -14.14912 -13.74856 -13.60621 -13.05134 -12.85652 -12.72588 -12.36432 -12.10602 -11.94550 -11.21891 -11.04661 -11.02230 -10.54166 -10.30873 -10.18500 -9.54417 -8.88136 -8.46849 -6.22612 -0.43647 -0.20060 0.52573 0.63932 1.32664 1.42096 1.46830 1.98825 2.17486 2.40195 2.64151 2.71489 2.95926 3.15502 3.49476 3.63775 3.78628 3.83768 4.14690 4.22948 4.38699 4.42235 4.52445 4.68067 4.70617 4.79980 4.96497 5.04362 5.26606 5.32695 5.46207 5.65048 5.71938 5.75558 5.98354 6.21938 6.48014 6.70310 6.83185 7.32676 7.88017 8.58564 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014277 B = 0.007873 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.751282 B = 3555.438540 C = 5117.779329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.039 3.961 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.250 1.250 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.399 5.399 10 C 0.504 3.496 11 O -0.568 6.568 12 C -0.053 4.053 13 C -0.142 4.142 14 C 0.144 3.856 15 N -0.510 5.510 16 C 0.295 3.705 17 F -0.113 7.113 18 C -0.160 4.160 19 C 0.125 3.875 20 C -0.147 4.147 21 C -0.096 4.096 22 C -0.131 4.131 23 C -0.093 4.093 24 C -0.155 4.155 25 H 0.269 0.731 26 H 0.157 0.843 27 H 0.215 0.785 28 H 0.144 0.856 29 H 0.101 0.899 30 H 0.147 0.853 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 -13.929 2.936 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.171 4.171 3 Si 0.792 3.208 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.174 1.174 7 C -0.498 4.498 8 H 0.106 0.894 9 N -0.112 5.112 10 C 0.294 3.706 11 O -0.449 6.449 12 C -0.064 4.064 13 C -0.162 4.162 14 C -0.012 4.012 15 N -0.226 5.226 16 C 0.142 3.858 17 F -0.092 7.092 18 C -0.182 4.182 19 C 0.032 3.968 20 C -0.167 4.167 21 C -0.115 4.115 22 C -0.149 4.149 23 C -0.112 4.112 24 C -0.175 4.175 25 H 0.079 0.921 26 H 0.175 0.825 27 H 0.232 0.768 28 H 0.162 0.838 29 H 0.119 0.881 30 H 0.165 0.835 31 H 0.177 0.823 32 H 0.169 0.831 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.376 -13.930 2.301 14.124 hybrid contribution 0.564 2.423 -0.338 2.511 sum 0.941 -11.508 1.963 11.712 Atomic orbital electron populations 1.69958 1.08269 1.29363 1.41428 1.26067 0.95307 1.02930 0.92750 0.85339 0.79452 0.78081 0.77930 1.21427 1.20083 1.17355 1.19297 0.98894 0.86817 1.44790 0.89382 1.41022 1.46411 1.06981 1.16788 1.18482 0.83287 0.87667 0.81125 1.90577 1.62656 1.32291 1.59332 1.20424 0.97161 0.94959 0.93874 1.23052 0.97007 0.93491 1.02629 1.23020 0.92518 0.97099 0.88573 1.66970 1.20317 1.29578 1.05715 1.17804 0.97262 0.91324 0.79404 1.91599 1.92519 1.95637 1.29465 1.21756 1.01989 0.98500 0.95996 1.18547 0.98746 0.86211 0.93265 1.21146 1.02741 0.99164 0.93633 1.21296 0.98215 0.91196 1.00747 1.21418 1.00298 0.99160 0.94015 1.21183 0.98606 0.96314 0.95052 1.21116 1.03282 0.93459 0.99692 0.92137 0.82516 0.76838 0.83846 0.88105 0.83495 0.82265 0.83117 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.92 12.30 21.67 0.27 -49.65 16 2 C 0.04 2.14 4.13 84.96 0.35 2.49 16 3 Si 0.97 44.12 29.63 68.60 2.03 46.15 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 7 C -0.37 -20.22 8.57 84.10 0.72 -19.50 16 8 H 0.09 4.66 7.95 -2.91 -0.02 4.63 16 9 N -0.40 -19.97 2.65 -461.82 -1.22 -21.20 16 10 C 0.50 26.01 6.66 86.82 0.58 26.58 16 11 O -0.57 -33.97 14.80 -3.88 -0.06 -34.02 16 12 C -0.05 -2.18 4.59 -19.89 -0.09 -2.27 16 13 C -0.14 -4.68 6.60 22.64 0.15 -4.53 16 14 C 0.14 3.80 11.17 84.62 0.95 4.74 16 15 N -0.51 -15.64 10.35 -197.12 -2.04 -17.68 16 16 C 0.30 9.93 8.41 84.73 0.71 10.64 16 17 F -0.11 -3.64 17.29 44.97 0.78 -2.86 16 18 C -0.16 -6.05 9.67 22.70 0.22 -5.83 16 19 C 0.13 4.97 3.46 38.24 0.13 5.10 16 20 C -0.15 -5.25 8.98 22.41 0.20 -5.05 16 21 C -0.10 -2.40 10.04 22.25 0.22 -2.18 16 22 C -0.13 -2.61 10.04 22.30 0.22 -2.39 16 23 C -0.09 -2.13 9.94 22.25 0.22 -1.90 16 24 C -0.16 -5.00 6.03 22.41 0.14 -4.86 16 25 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.16 5.25 4.60 -2.91 -0.01 5.24 16 27 H 0.22 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.14 5.53 7.95 -2.91 -0.02 5.50 16 29 H 0.10 4.18 7.92 -2.91 -0.02 4.16 16 30 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.10 3.50 7.12 -2.91 -0.02 3.48 16 Total: -1.00 -69.97 292.69 5.63 -64.34 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.15 Total: 13.88 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 4.72 Total: 1.04 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -3.00 Total: -88.53 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.06 Total: -34.02 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.97 5.63 -64.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195331897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.777 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds