Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47280 * 2 1 4 4 C 1.50699 * 109.47121 * 119.99111 * 2 1 3 5 5 H 1.08001 * 119.99984 * 120.00061 * 4 2 1 6 6 C 1.37880 * 120.00234 * 300.00724 * 4 2 1 7 7 N 1.31509 * 120.00107 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99986 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47094 * 59.99748 * 8 6 4 10 10 H 1.48500 * 109.47005 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47137 * 300.00002 * 8 6 4 12 12 N 1.46900 * 109.47747 * 239.99479 * 2 1 3 13 13 C 1.46901 * 110.99553 * 298.91121 * 12 2 1 14 14 C 1.40023 * 110.99711 * 62.85942 * 12 2 1 15 15 C 1.38990 * 120.08633 * 267.77853 * 14 12 2 16 16 F 1.35100 * 120.04564 * 359.70224 * 15 14 12 17 17 C 1.38329 * 119.91275 * 179.97438 * 15 14 12 18 18 C 1.38278 * 120.08622 * 359.97438 * 17 15 14 19 19 N 1.48020 * 119.91312 * 180.02562 * 18 17 15 20 20 O 1.21800 * 120.00015 * 179.97438 * 19 18 17 21 21 O 1.21796 * 120.00467 * 0.02562 * 19 18 17 22 22 C 1.38271 * 120.17231 * 0.04575 * 18 17 15 23 23 C 1.38335 * 120.08701 * 359.95599 * 22 18 17 24 24 F 1.35095 * 120.04625 * 180.02562 * 23 22 18 25 25 H 1.09000 * 109.47114 * 62.37997 * 1 2 3 26 26 H 1.08999 * 109.46783 * 182.37303 * 1 2 3 27 27 H 1.08996 * 109.47568 * 302.37633 * 1 2 3 28 28 H 0.96999 * 120.00183 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46573 * 161.63032 * 13 12 2 30 30 H 1.09001 * 109.47270 * 281.62441 * 13 12 2 31 31 H 1.09000 * 109.47566 * 41.63095 * 13 12 2 32 32 H 1.08002 * 119.96073 * 179.97438 * 17 15 14 33 33 H 1.07998 * 119.95745 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3213 -1.1199 4.0082 9 1 3.8062 -1.1204 4.0084 10 1 1.8267 -0.4194 5.2206 11 1 1.8258 -2.5199 4.0080 12 7 2.0198 -0.6926 -1.1993 13 6 1.5702 -2.0909 -1.2201 14 6 1.6249 -0.0212 -2.3629 15 6 0.4419 -0.3722 -3.0024 16 9 -0.3264 -1.3663 -2.5057 17 6 0.0549 0.2938 -4.1514 18 6 0.8431 1.3080 -4.6635 19 7 0.4250 2.0186 -5.8929 20 8 1.1178 2.9125 -6.3450 21 8 -0.6122 1.7100 -6.4518 22 6 2.0209 1.6599 -4.0303 23 6 2.4147 0.9986 -2.8809 24 9 3.5654 1.3434 -2.2627 25 1 -0.3633 0.4764 -0.9106 26 1 -0.3633 -1.0268 0.0426 27 1 -0.3634 0.5503 0.8679 28 1 0.7093 1.1620 3.4843 29 1 1.6546 -2.4846 -2.2331 30 1 2.1914 -2.6824 -0.5475 31 1 0.5310 -2.1434 -0.8954 32 1 -0.8640 0.0214 -4.6492 33 1 2.6340 2.4523 -4.4335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227891237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = -40.942026 kcal Electronic energy + Delta-G solvation = -23192.601057 eV Core-core repulsion = 19279.948712 eV Total energy + Delta-G solvation = -3912.652345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.30395 -48.89325 -42.23946 -39.57511 -37.21507 -36.63995 -33.24179 -31.01262 -30.82229 -29.07402 -26.91617 -25.55326 -24.86980 -23.17765 -22.49615 -20.22295 -19.70370 -18.90396 -17.64061 -17.31874 -16.91420 -16.78379 -16.55709 -16.00851 -15.81755 -15.31942 -15.14219 -14.61287 -13.94335 -13.39893 -13.33099 -12.97042 -12.83481 -12.43429 -12.06745 -11.63587 -11.51804 -11.47479 -11.30697 -11.21212 -11.17808 -10.98472 -10.85021 -10.51197 -10.27304 -9.44043 -9.26001 -9.14622 -8.63602 -7.81723 -6.26206 -4.32988 -0.33130 0.55826 1.17797 1.21540 2.86523 3.19410 3.24733 3.26650 3.59668 3.85425 3.98211 4.25630 4.34510 4.45649 4.75135 5.06784 5.14076 5.25622 5.43131 5.58998 5.61581 6.03077 6.05827 6.25345 6.33108 6.42343 6.53241 6.62517 6.99667 7.22794 7.45547 7.56906 7.60893 7.90708 8.10086 8.69607 9.33244 10.81126 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.028908 B = 0.004841 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.355463 B = 5782.410943 C = 6090.192038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.217 3.783 3 H 0.049 0.951 4 C -0.513 4.513 5 H 0.067 0.933 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.487 5.487 13 C 0.019 3.981 14 C 0.119 3.881 15 C 0.087 3.913 16 F -0.109 7.109 17 C -0.088 4.088 18 C -0.026 4.026 19 N 0.038 4.962 20 O -0.158 6.158 21 O -0.160 6.160 22 C -0.089 4.089 23 C 0.129 3.871 24 F -0.101 7.101 25 H 0.007 0.993 26 H 0.043 0.957 27 H 0.097 0.903 28 H 0.266 0.734 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.166 0.834 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 -1.299 -11.123 11.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.116 3.884 3 H 0.066 0.934 4 C -0.551 4.551 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.732 3.268 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.203 5.203 13 C -0.128 4.128 14 C 0.017 3.983 15 C 0.063 3.937 16 F -0.087 7.087 17 C -0.109 4.109 18 C -0.111 4.111 19 N 0.557 4.443 20 O -0.374 6.374 21 O -0.375 6.375 22 C -0.110 4.110 23 C 0.107 3.893 24 F -0.079 7.079 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.183 0.817 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.072 -1.580 -10.211 10.332 hybrid contribution -0.557 -0.365 0.710 0.973 sum -0.485 -1.945 -9.501 9.710 Atomic orbital electron populations 1.22522 0.99235 1.00725 1.00772 1.19637 0.90506 0.94812 0.83451 0.93356 1.20916 1.32046 1.13190 0.88957 0.91466 1.24914 0.94784 0.94985 0.99169 1.69852 1.36124 1.22599 1.24207 0.86445 0.79326 0.79549 0.81485 1.20002 1.21146 1.20111 1.60112 1.56367 1.03455 1.00359 1.22751 1.01845 0.87591 1.00614 1.19782 0.89696 0.93387 0.95479 1.17443 0.89737 0.91360 0.95161 1.91582 1.73522 1.57246 1.86392 1.20754 1.01253 0.94076 0.94803 1.20058 0.99083 1.00841 0.91111 1.43326 0.99939 0.99722 1.01330 1.94543 1.52677 1.22596 1.67563 1.94540 1.12611 1.70074 1.60321 1.20757 0.95476 1.00709 0.94064 1.16572 0.84664 0.96367 0.91747 1.91618 1.44458 1.90606 1.81240 0.97409 0.93856 0.88421 0.92449 0.93419 0.90033 0.91792 0.81657 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 7.50 37.16 0.28 -3.57 16 2 C 0.22 5.03 2.34 -68.87 -0.16 4.86 16 3 H 0.05 1.25 8.13 -51.93 -0.42 0.82 16 4 C -0.51 -12.94 8.07 -34.44 -0.28 -13.22 16 5 H 0.07 1.68 6.76 -52.49 -0.35 1.33 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.76 11.34 55.43 0.63 -23.13 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 N -0.49 -9.59 4.61 -172.51 -0.80 -10.38 16 13 C 0.02 0.33 7.50 60.06 0.45 0.78 16 14 C 0.12 2.01 4.30 -83.56 -0.36 1.65 16 15 C 0.09 1.30 5.24 -39.27 -0.21 1.10 16 16 F -0.11 -1.69 12.43 2.25 0.03 -1.66 16 17 C -0.09 -1.15 9.53 -39.53 -0.38 -1.52 16 18 C -0.03 -0.36 6.85 -79.92 -0.55 -0.90 16 19 N 0.04 0.53 4.45 33.98 0.15 0.68 16 20 O -0.16 -2.28 18.44 -29.46 -0.54 -2.83 16 21 O -0.16 -2.32 18.44 -29.46 -0.54 -2.86 16 22 C -0.09 -1.17 9.53 -39.53 -0.38 -1.55 16 23 C 0.13 2.02 7.31 -39.26 -0.29 1.73 16 24 F -0.10 -1.73 17.08 2.25 0.04 -1.69 16 25 H 0.01 0.14 5.96 -51.93 -0.31 -0.17 16 26 H 0.04 0.93 6.09 -51.93 -0.32 0.61 16 27 H 0.10 2.42 6.14 -51.93 -0.32 2.10 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.05 0.72 7.25 -51.93 -0.38 0.34 16 30 H 0.08 1.46 7.14 -51.93 -0.37 1.09 16 31 H 0.06 1.16 4.21 -51.93 -0.22 0.94 16 32 H 0.17 1.82 7.60 -52.49 -0.40 1.42 16 33 H 0.17 1.85 7.60 -52.49 -0.40 1.46 16 LS Contribution 286.33 15.07 4.31 4.31 Total: -1.00 -26.09 286.33 -6.32 -32.41 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -2.62 Total: -0.84 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.96 Total: -9.09 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: -0.02 Total: -32.83 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -1.09 Total: -5.69 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.35 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.09 -6.32 -32.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227891237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.528 kcal (2) G-P(sol) polarization free energy of solvation -26.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds