Wall clock time and date at job start Tue Mar 31 2020 06:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47280 * 2 1 4 4 C 1.50699 * 109.47121 * 119.99111 * 2 1 3 5 5 H 1.08001 * 119.99984 * 120.00061 * 4 2 1 6 6 C 1.37880 * 120.00234 * 300.00724 * 4 2 1 7 7 N 1.31509 * 120.00107 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99986 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47094 * 59.99748 * 8 6 4 10 10 H 1.48500 * 109.47005 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47137 * 300.00002 * 8 6 4 12 12 N 1.46900 * 109.47747 * 239.99479 * 2 1 3 13 13 C 1.46901 * 110.99553 * 298.91121 * 12 2 1 14 14 C 1.40023 * 110.99711 * 62.85942 * 12 2 1 15 15 C 1.38990 * 120.08633 * 267.77853 * 14 12 2 16 16 F 1.35100 * 120.04564 * 359.70224 * 15 14 12 17 17 C 1.38329 * 119.91275 * 179.97438 * 15 14 12 18 18 C 1.38278 * 120.08622 * 359.97438 * 17 15 14 19 19 N 1.48020 * 119.91312 * 180.02562 * 18 17 15 20 20 O 1.21800 * 120.00015 * 179.97438 * 19 18 17 21 21 O 1.21796 * 120.00467 * 0.02562 * 19 18 17 22 22 C 1.38271 * 120.17231 * 0.04575 * 18 17 15 23 23 C 1.38335 * 120.08701 * 359.95599 * 22 18 17 24 24 F 1.35095 * 120.04625 * 180.02562 * 23 22 18 25 25 H 1.09000 * 109.47114 * 62.37997 * 1 2 3 26 26 H 1.08999 * 109.46783 * 182.37303 * 1 2 3 27 27 H 1.08996 * 109.47568 * 302.37633 * 1 2 3 28 28 H 0.96999 * 120.00183 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46573 * 161.63032 * 13 12 2 30 30 H 1.09001 * 109.47270 * 281.62441 * 13 12 2 31 31 H 1.09000 * 109.47566 * 41.63095 * 13 12 2 32 32 H 1.08002 * 119.96073 * 179.97438 * 17 15 14 33 33 H 1.07998 * 119.95745 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.6532 -1.5883 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3213 -1.1199 4.0082 9 1 3.8062 -1.1204 4.0084 10 1 1.8267 -0.4194 5.2206 11 1 1.8258 -2.5199 4.0080 12 7 2.0198 -0.6926 -1.1993 13 6 1.5702 -2.0909 -1.2201 14 6 1.6249 -0.0212 -2.3629 15 6 0.4419 -0.3722 -3.0024 16 9 -0.3264 -1.3663 -2.5057 17 6 0.0549 0.2938 -4.1514 18 6 0.8431 1.3080 -4.6635 19 7 0.4250 2.0186 -5.8929 20 8 1.1178 2.9125 -6.3450 21 8 -0.6122 1.7100 -6.4518 22 6 2.0209 1.6599 -4.0303 23 6 2.4147 0.9986 -2.8809 24 9 3.5654 1.3434 -2.2627 25 1 -0.3633 0.4764 -0.9106 26 1 -0.3633 -1.0268 0.0426 27 1 -0.3634 0.5503 0.8679 28 1 0.7093 1.1620 3.4843 29 1 1.6546 -2.4846 -2.2331 30 1 2.1914 -2.6824 -0.5475 31 1 0.5310 -2.1434 -0.8954 32 1 -0.8640 0.0214 -4.6492 33 1 2.6340 2.4523 -4.4335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227891237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:38 Heat of formation + Delta-G solvation = -54.375698 kcal Electronic energy + Delta-G solvation = -23193.183585 eV Core-core repulsion = 19279.948712 eV Total energy + Delta-G solvation = -3913.234873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.51254 -50.17327 -43.37164 -40.87273 -38.63267 -37.77473 -35.04936 -32.41247 -31.98014 -30.72269 -28.19708 -27.40056 -26.30534 -24.36459 -23.79584 -21.85347 -20.86648 -20.04204 -18.76874 -18.55341 -18.45528 -18.12496 -18.00402 -17.41086 -17.02350 -16.75103 -16.57301 -16.14951 -15.46784 -14.88895 -14.65270 -14.47955 -14.13769 -13.70786 -13.44589 -13.14517 -13.08687 -12.91177 -12.75284 -12.66962 -12.55689 -12.41920 -12.34583 -12.25047 -12.10624 -11.13694 -10.76342 -10.55628 -10.33066 -9.29768 -8.21200 -6.33729 -1.49746 -0.58544 -0.00639 0.06632 1.42870 1.43902 1.51279 1.69245 2.34999 2.41681 2.64546 2.74332 3.10042 3.21871 3.31147 3.60193 3.91780 4.09474 4.26577 4.31285 4.46058 4.52407 4.62751 4.66104 4.82098 4.87634 5.03337 5.14544 5.34392 5.51996 5.60415 5.84510 6.08497 6.35084 6.41536 6.74080 7.35833 8.85310 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.028908 B = 0.004841 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.355463 B = 5782.410943 C = 6090.192038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.225 3.775 3 H 0.013 0.987 4 C -0.524 4.524 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.917 5.917 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.502 5.502 13 C 0.024 3.976 14 C 0.093 3.907 15 C 0.086 3.914 16 F -0.111 7.111 17 C -0.070 4.070 18 C -0.021 4.021 19 N 0.037 4.963 20 O -0.160 6.160 21 O -0.158 6.158 22 C -0.070 4.070 23 C 0.119 3.881 24 F -0.114 7.114 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.265 0.735 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.191 0.809 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 -1.684 -12.491 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.122 3.878 3 H 0.031 0.969 4 C -0.563 4.563 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.788 3.212 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.193 1.193 12 N -0.218 5.218 13 C -0.123 4.123 14 C -0.007 4.007 15 C 0.063 3.937 16 F -0.090 7.090 17 C -0.090 4.090 18 C -0.105 4.105 19 N 0.557 4.443 20 O -0.375 6.375 21 O -0.374 6.374 22 C -0.090 4.090 23 C 0.097 3.903 24 F -0.092 7.092 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.209 0.791 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.223 -1.971 -11.611 11.779 hybrid contribution -0.486 -0.187 0.976 1.107 sum -0.709 -2.158 -10.634 10.874 Atomic orbital electron populations 1.22282 0.98725 1.00455 1.00159 1.19270 0.90752 0.93049 0.84749 0.96889 1.21214 1.31777 1.13128 0.90132 0.91722 1.25655 0.95009 0.95623 1.01833 1.69979 1.37203 1.23818 1.24579 0.85531 0.78675 0.78761 0.78225 1.19868 1.21075 1.19299 1.59870 1.57607 1.04147 1.00217 1.22725 1.01000 0.86608 1.01918 1.19865 0.91173 0.94627 0.95066 1.17378 0.89220 0.91524 0.95572 1.91578 1.73457 1.57385 1.86553 1.20909 1.01644 0.92822 0.93628 1.20107 0.99003 1.00603 0.90796 1.43353 0.99925 0.99712 1.01338 1.94556 1.52679 1.22656 1.67626 1.94549 1.12567 1.69990 1.60318 1.20881 0.95318 1.00214 0.92598 1.16714 0.84455 0.96598 0.92526 1.91584 1.45208 1.90759 1.81694 0.95824 0.93606 0.91266 0.92607 0.90901 0.90906 0.92510 0.79142 0.78980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.03 7.50 71.98 0.54 -6.49 16 2 C 0.22 10.60 2.34 44.17 0.10 10.70 16 3 H 0.01 0.71 8.13 -2.38 -0.02 0.69 16 4 C -0.52 -26.88 8.07 25.60 0.21 -26.67 16 5 H 0.06 3.27 6.76 -2.91 -0.02 3.25 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -49.97 11.34 21.45 0.24 -49.72 16 8 Si 0.96 41.39 29.54 68.60 2.03 43.41 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 N -0.50 -19.77 4.61 -699.70 -3.23 -23.00 16 13 C 0.02 0.83 7.50 127.69 0.96 1.78 16 14 C 0.09 3.09 4.30 38.19 0.16 3.26 16 15 C 0.09 2.43 5.24 22.47 0.12 2.55 16 16 F -0.11 -3.24 12.43 44.97 0.56 -2.68 16 17 C -0.07 -1.60 9.53 22.30 0.21 -1.39 16 18 C -0.02 -0.50 6.85 36.39 0.25 -0.25 16 19 N 0.04 0.94 4.45 -46.42 -0.21 0.73 16 20 O -0.16 -4.15 18.44 18.89 0.35 -3.80 16 21 O -0.16 -4.08 18.44 18.89 0.35 -3.73 16 22 C -0.07 -1.67 9.53 22.30 0.21 -1.46 16 23 C 0.12 3.61 7.31 22.48 0.16 3.77 16 24 F -0.11 -3.90 17.08 44.97 0.77 -3.13 16 25 H 0.02 0.93 5.96 -2.39 -0.01 0.92 16 26 H 0.05 1.98 6.09 -2.39 -0.01 1.96 16 27 H 0.07 3.51 6.14 -2.39 -0.01 3.49 16 28 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.07 2.11 7.25 -2.39 -0.02 2.09 16 30 H 0.07 2.60 7.14 -2.39 -0.02 2.58 16 31 H 0.06 2.03 4.21 -2.39 -0.01 2.02 16 32 H 0.19 3.45 7.60 -2.91 -0.02 3.43 16 33 H 0.19 3.66 7.60 -2.91 -0.02 3.64 16 Total: -1.00 -55.74 286.33 5.42 -50.32 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.18 Total: 4.38 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 3.38 Total: -12.78 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -3.19 Total: -71.99 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.70 Total: -7.53 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 1.33 Total: -5.81 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -55.74 5.42 -50.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227891237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.054 kcal (2) G-P(sol) polarization free energy of solvation -55.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds