Wall clock time and date at job start Tue Mar 31 2020 06:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46935 * 2 1 4 4 C 1.46899 * 110.99945 * 287.80146 * 3 2 1 5 5 C 1.50700 * 109.46998 * 160.37225 * 4 3 2 6 6 H 1.08001 * 120.00262 * 4.69050 * 5 4 3 7 7 C 1.37880 * 120.00234 * 184.68715 * 5 4 3 8 8 N 1.31517 * 119.99775 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00257 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46821 * 60.00429 * 9 7 5 11 11 H 1.48494 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47169 * 300.00344 * 9 7 5 13 13 C 1.40020 * 110.99946 * 163.85048 * 3 2 1 14 14 C 1.38992 * 120.08639 * 63.92722 * 13 3 2 15 15 F 1.35103 * 120.04248 * 0.04641 * 14 13 3 16 16 C 1.38329 * 119.91430 * 180.02562 * 14 13 3 17 17 C 1.38281 * 120.08723 * 0.02562 * 16 14 13 18 18 N 1.48022 * 119.91605 * 179.97438 * 17 16 14 19 19 O 1.21802 * 119.99915 * 359.97438 * 18 17 16 20 20 O 1.21797 * 119.99820 * 180.02562 * 18 17 16 21 21 C 1.38274 * 120.16863 * 359.97438 * 17 16 14 22 22 C 1.38331 * 120.08489 * 359.97438 * 21 17 16 23 23 F 1.35108 * 120.04058 * 180.02562 * 22 21 17 24 24 H 1.09001 * 109.46877 * 179.11958 * 1 2 3 25 25 H 1.08997 * 109.47183 * 299.11479 * 1 2 3 26 26 H 1.08993 * 109.47138 * 59.11758 * 1 2 3 27 27 H 1.09004 * 109.47174 * 240.00090 * 2 1 3 28 28 H 1.09004 * 109.47195 * 120.00001 * 2 1 3 29 29 H 1.08998 * 109.47288 * 280.37180 * 4 3 2 30 30 H 1.08998 * 109.46966 * 40.37821 * 4 3 2 31 31 H 0.96992 * 119.99898 * 180.02562 * 8 7 5 32 32 H 1.07999 * 119.95866 * 180.27870 * 16 14 13 33 33 H 1.07996 * 119.95645 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7998 2.0211 -1.3058 5 6 1.8509 3.5191 -1.1497 6 1 2.1036 3.9542 -0.1941 7 6 1.5750 4.3343 -2.2270 8 7 1.2668 3.8045 -3.3906 9 14 1.6376 6.1912 -2.0334 10 1 3.0027 6.5994 -1.6149 11 1 1.3042 6.8354 -3.3291 12 1 0.6563 6.6147 -1.0024 13 6 3.3707 1.4396 0.3636 14 6 4.3334 0.8407 -0.4404 15 9 3.9671 0.2054 -1.5751 16 6 5.6671 0.8963 -0.0776 17 6 6.0430 1.5462 1.0837 18 7 7.4712 1.6030 1.4687 19 8 8.3134 1.0772 0.7631 20 8 7.8039 2.1746 2.4914 21 6 5.0883 2.1432 1.8862 22 6 3.7527 2.0928 1.5295 23 9 2.8206 2.6769 2.3140 24 1 -0.3633 -1.0276 -0.0158 25 1 -0.3633 0.5000 0.8978 26 1 -0.3633 0.5274 -0.8819 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.5762 1.7015 -2.0009 30 1 0.8234 1.7292 -1.6923 31 1 1.0731 4.3779 -4.1485 32 1 6.4162 0.4351 -0.7041 33 1 5.3857 2.6495 2.7925 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227891288.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:23 Heat of formation + Delta-G solvation = -53.851560 kcal Electronic energy + Delta-G solvation = -23061.283318 eV Core-core repulsion = 19148.071174 eV Total energy + Delta-G solvation = -3913.212145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.14729 -48.84322 -42.22324 -39.43022 -36.98929 -36.62353 -32.87992 -31.74358 -30.77418 -29.61655 -27.38801 -25.61344 -23.36997 -23.01508 -22.52857 -20.70914 -19.66597 -18.88237 -17.61685 -17.36592 -17.06038 -16.84173 -16.15682 -16.06022 -15.75072 -15.33567 -14.93750 -14.77111 -14.12345 -13.64624 -13.25750 -13.01104 -12.65685 -12.35879 -12.26850 -11.83845 -11.67707 -11.57474 -11.51251 -11.27558 -11.18949 -11.05673 -10.85230 -10.55451 -10.12265 -9.57275 -9.13738 -9.06369 -8.63961 -8.00273 -6.22453 -4.25562 -0.30633 0.62872 1.21099 1.22977 2.92311 3.22797 3.27400 3.30095 3.67769 3.88431 3.98911 4.31524 4.39597 4.51273 4.80883 5.14048 5.14383 5.28872 5.31978 5.45153 5.65160 5.67632 5.77001 5.94460 6.12214 6.25101 6.34303 6.56658 6.79592 6.90743 7.42330 7.58822 7.68171 7.81183 8.12344 8.78983 9.39189 10.87646 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.006431 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.201567 B = 4352.686455 C = 5029.423902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 N -0.503 5.503 4 C 0.185 3.815 5 C -0.518 4.518 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.126 3.874 14 C 0.101 3.899 15 F -0.108 7.108 16 C -0.098 4.098 17 C -0.012 4.012 18 N 0.036 4.964 19 O -0.157 6.157 20 O -0.156 6.156 21 C -0.102 4.102 22 C 0.152 3.848 23 F -0.100 7.100 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.011 0.989 30 H 0.052 0.948 31 H 0.265 0.735 32 H 0.166 0.834 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 -7.493 7.860 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 N -0.225 5.225 4 C 0.063 3.937 5 C -0.557 4.557 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.028 3.972 14 C 0.078 3.922 15 F -0.087 7.087 16 C -0.119 4.119 17 C -0.095 4.095 18 N 0.556 4.444 19 O -0.373 6.373 20 O -0.372 6.372 21 C -0.122 4.122 22 C 0.131 3.869 23 F -0.078 7.078 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.184 0.816 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.741 -7.220 7.783 11.256 hybrid contribution 0.570 0.714 -0.678 1.137 sum 4.311 -6.506 7.105 10.554 Atomic orbital electron populations 1.21731 0.93909 1.00836 1.03517 1.22158 0.97281 0.87733 1.00349 1.60163 1.08764 1.16711 1.36902 1.20177 0.98294 0.94597 0.80666 1.21042 1.47899 0.90063 0.96652 0.91967 1.24941 0.94887 0.99265 0.95007 1.69922 1.46456 1.35772 1.00968 0.86543 0.78776 0.84642 0.77490 1.20163 1.21060 1.19864 1.19469 0.92073 0.93539 0.92159 1.17821 0.91769 0.97388 0.85246 1.91574 1.91720 1.78731 1.46627 1.20777 0.96202 0.99103 0.95777 1.20120 0.80985 1.09225 0.99181 1.43346 1.02853 0.98329 0.99897 1.94546 1.45581 1.46288 1.50891 1.94540 1.85852 1.42773 1.14040 1.20778 0.90158 0.99700 1.01589 1.16696 0.84882 0.95795 0.89560 1.91604 1.63687 1.80836 1.71676 0.92686 0.91931 0.91474 0.93869 0.91940 0.97094 0.93025 0.92500 0.81628 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.99 37.16 0.37 -1.76 16 2 C 0.05 0.82 5.16 -3.82 -0.02 0.80 16 3 N -0.50 -9.89 4.19 -172.31 -0.72 -10.61 16 4 C 0.18 4.41 4.36 -4.98 -0.02 4.39 16 5 C -0.52 -13.81 8.96 -34.44 -0.31 -14.12 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 9 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.13 2.24 4.25 -83.56 -0.36 1.88 16 14 C 0.10 1.66 6.59 -39.27 -0.26 1.40 16 15 F -0.11 -1.89 13.70 2.25 0.03 -1.86 16 16 C -0.10 -1.39 9.53 -39.53 -0.38 -1.76 16 17 C -0.01 -0.17 6.85 -79.92 -0.55 -0.71 16 18 N 0.04 0.53 4.45 33.98 0.15 0.68 16 19 O -0.16 -2.37 18.44 -29.46 -0.54 -2.91 16 20 O -0.16 -2.32 18.44 -29.46 -0.54 -2.86 16 21 C -0.10 -1.40 9.53 -39.53 -0.38 -1.78 16 22 C 0.15 2.46 7.31 -39.27 -0.29 2.18 16 23 F -0.10 -1.71 17.08 2.25 0.04 -1.67 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.07 1.14 6.52 -51.93 -0.34 0.80 16 27 H 0.04 0.70 6.80 -51.93 -0.35 0.35 16 28 H 0.06 0.88 7.97 -51.93 -0.41 0.46 16 29 H 0.01 0.29 5.79 -51.93 -0.30 -0.02 16 30 H 0.05 1.31 6.25 -51.93 -0.32 0.98 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.17 2.01 7.60 -52.49 -0.40 1.61 16 33 H 0.17 1.93 7.60 -52.49 -0.40 1.54 16 LS Contribution 299.38 15.07 4.51 4.51 Total: -1.00 -28.18 299.38 -6.56 -34.74 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: -2.92 Total: -3.61 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.28 Total: -7.91 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.17 Total: -34.48 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -1.09 Total: -5.78 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.07 Total: -3.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.18 -6.56 -34.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227891288.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.110 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds