Wall clock time and date at job start Tue Mar 31 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46935 * 2 1 4 4 C 1.46899 * 110.99945 * 287.80146 * 3 2 1 5 5 C 1.50700 * 109.46998 * 160.37225 * 4 3 2 6 6 H 1.08001 * 120.00262 * 4.69050 * 5 4 3 7 7 C 1.37880 * 120.00234 * 184.68715 * 5 4 3 8 8 N 1.31517 * 119.99775 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00257 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46821 * 60.00429 * 9 7 5 11 11 H 1.48494 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47169 * 300.00344 * 9 7 5 13 13 C 1.40020 * 110.99946 * 163.85048 * 3 2 1 14 14 C 1.38992 * 120.08639 * 63.92722 * 13 3 2 15 15 F 1.35103 * 120.04248 * 0.04641 * 14 13 3 16 16 C 1.38329 * 119.91430 * 180.02562 * 14 13 3 17 17 C 1.38281 * 120.08723 * 0.02562 * 16 14 13 18 18 N 1.48022 * 119.91605 * 179.97438 * 17 16 14 19 19 O 1.21802 * 119.99915 * 359.97438 * 18 17 16 20 20 O 1.21797 * 119.99820 * 180.02562 * 18 17 16 21 21 C 1.38274 * 120.16863 * 359.97438 * 17 16 14 22 22 C 1.38331 * 120.08489 * 359.97438 * 21 17 16 23 23 F 1.35108 * 120.04058 * 180.02562 * 22 21 17 24 24 H 1.09001 * 109.46877 * 179.11958 * 1 2 3 25 25 H 1.08997 * 109.47183 * 299.11479 * 1 2 3 26 26 H 1.08993 * 109.47138 * 59.11758 * 1 2 3 27 27 H 1.09004 * 109.47174 * 240.00090 * 2 1 3 28 28 H 1.09004 * 109.47195 * 120.00001 * 2 1 3 29 29 H 1.08998 * 109.47288 * 280.37180 * 4 3 2 30 30 H 1.08998 * 109.46966 * 40.37821 * 4 3 2 31 31 H 0.96992 * 119.99898 * 180.02562 * 8 7 5 32 32 H 1.07999 * 119.95866 * 180.27870 * 16 14 13 33 33 H 1.07996 * 119.95645 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7998 2.0211 -1.3058 5 6 1.8509 3.5191 -1.1497 6 1 2.1036 3.9542 -0.1941 7 6 1.5750 4.3343 -2.2270 8 7 1.2668 3.8045 -3.3906 9 14 1.6376 6.1912 -2.0334 10 1 3.0027 6.5994 -1.6149 11 1 1.3042 6.8354 -3.3291 12 1 0.6563 6.6147 -1.0024 13 6 3.3707 1.4396 0.3636 14 6 4.3334 0.8407 -0.4404 15 9 3.9671 0.2054 -1.5751 16 6 5.6671 0.8963 -0.0776 17 6 6.0430 1.5462 1.0837 18 7 7.4712 1.6030 1.4687 19 8 8.3134 1.0772 0.7631 20 8 7.8039 2.1746 2.4914 21 6 5.0883 2.1432 1.8862 22 6 3.7527 2.0928 1.5295 23 9 2.8206 2.6769 2.3140 24 1 -0.3633 -1.0276 -0.0158 25 1 -0.3633 0.5000 0.8978 26 1 -0.3633 0.5274 -0.8819 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.5762 1.7015 -2.0009 30 1 0.8234 1.7292 -1.6923 31 1 1.0731 4.3779 -4.1485 32 1 6.4162 0.4351 -0.7041 33 1 5.3857 2.6495 2.7925 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227891288.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:22 Heat of formation + Delta-G solvation = -68.711174 kcal Electronic energy + Delta-G solvation = -23061.927679 eV Core-core repulsion = 19148.071174 eV Total energy + Delta-G solvation = -3913.856506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.46958 -50.13567 -43.40208 -40.73990 -38.38801 -37.80306 -34.88891 -32.99611 -31.98249 -31.11401 -29.05454 -26.99181 -24.88808 -24.51414 -23.76247 -22.14214 -20.88176 -20.07788 -18.93885 -18.78880 -18.49474 -18.09375 -17.80527 -17.42241 -17.02434 -16.75894 -16.56456 -16.10804 -15.71760 -15.12351 -14.59461 -14.30126 -14.22046 -13.81546 -13.57747 -13.41355 -13.03809 -12.95878 -12.81103 -12.74703 -12.61636 -12.47176 -12.36695 -12.23866 -11.81220 -11.50103 -10.68129 -10.42463 -10.31208 -9.57954 -8.28598 -6.38411 -1.51591 -0.58006 -0.01460 0.02976 1.36570 1.37810 1.45884 1.69262 2.30587 2.44542 2.59885 2.72586 3.05658 3.22953 3.32231 3.60380 3.89361 4.06279 4.11587 4.22948 4.38897 4.47139 4.52222 4.72884 4.81360 4.95588 5.03791 5.13015 5.16417 5.30872 5.51625 5.86603 6.08163 6.25213 6.39578 6.72863 7.30475 8.81443 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.006431 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.201567 B = 4352.686455 C = 5029.423902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.048 3.952 3 N -0.511 5.511 4 C 0.201 3.799 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.100 3.900 14 C 0.089 3.911 15 F -0.119 7.119 16 C -0.081 4.081 17 C -0.009 4.009 18 N 0.036 4.964 19 O -0.162 6.162 20 O -0.149 6.149 21 C -0.079 4.079 22 C 0.144 3.856 23 F -0.108 7.108 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.088 0.912 29 H -0.008 1.008 30 H 0.029 0.971 31 H 0.267 0.733 32 H 0.187 0.813 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.003 -7.312 9.243 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 N -0.233 5.233 4 C 0.078 3.922 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.187 4.187 8 N -0.566 5.566 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.003 3.997 14 C 0.066 3.934 15 F -0.097 7.097 16 C -0.102 4.102 17 C -0.093 4.093 18 N 0.556 4.444 19 O -0.377 6.377 20 O -0.368 6.368 21 C -0.099 4.099 22 C 0.123 3.877 23 F -0.086 7.086 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.009 0.991 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.205 0.795 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.885 -7.062 9.175 12.567 hybrid contribution 0.293 0.594 -1.033 1.227 sum 5.178 -6.468 8.142 11.616 Atomic orbital electron populations 1.21701 0.93187 1.02501 1.02031 1.22305 0.97908 0.86216 1.01328 1.59989 1.10576 1.18552 1.34223 1.19733 0.96308 0.93698 0.82505 1.21341 1.47419 0.91666 0.96332 0.92489 1.25737 0.94637 1.03564 0.94748 1.70031 1.47634 1.37233 1.01670 0.85611 0.78968 0.79589 0.77629 1.19569 1.20576 1.19264 1.19621 0.91475 0.95170 0.93467 1.17830 0.92450 0.98015 0.85071 1.91545 1.91934 1.78992 1.47237 1.20890 0.95530 0.98041 0.95726 1.20152 0.80988 1.08996 0.99129 1.43345 1.02813 0.98317 0.99893 1.94560 1.45609 1.46523 1.50986 1.94545 1.85844 1.42472 1.13901 1.20944 0.88816 0.98242 1.01921 1.16744 0.85602 0.96022 0.89361 1.91583 1.64164 1.81034 1.71776 0.89423 0.91997 0.94259 0.94283 0.89375 0.99075 0.95251 0.92454 0.79549 0.78589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.99 71.98 0.72 -3.34 16 2 C 0.05 1.53 5.16 86.30 0.45 1.97 16 3 N -0.51 -20.25 4.19 -699.06 -2.93 -23.19 16 4 C 0.20 9.90 4.36 85.56 0.37 10.27 16 5 C -0.53 -28.62 8.96 25.60 0.23 -28.40 16 6 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.69 5.46 84.65 0.46 1.15 16 8 N -0.93 -53.44 13.29 21.45 0.28 -53.16 16 9 Si 0.96 43.16 29.54 68.60 2.03 45.18 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.10 3.52 4.25 38.19 0.16 3.68 16 14 C 0.09 2.87 6.59 22.47 0.15 3.02 16 15 F -0.12 -4.18 13.70 44.97 0.62 -3.56 16 16 C -0.08 -2.15 9.53 22.30 0.21 -1.94 16 17 C -0.01 -0.24 6.85 36.39 0.25 0.01 16 18 N 0.04 0.95 4.45 -46.41 -0.21 0.75 16 19 O -0.16 -4.47 18.44 18.88 0.35 -4.12 16 20 O -0.15 -3.99 18.44 18.89 0.35 -3.64 16 21 C -0.08 -1.97 9.53 22.30 0.21 -1.76 16 22 C 0.14 4.45 7.31 22.47 0.16 4.62 16 23 F -0.11 -3.54 17.08 44.97 0.77 -2.77 16 24 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.04 1.37 6.52 -2.39 -0.02 1.36 16 27 H 0.04 1.28 6.80 -2.39 -0.02 1.26 16 28 H 0.09 2.36 7.97 -2.39 -0.02 2.34 16 29 H -0.01 -0.44 5.79 -2.39 -0.01 -0.46 16 30 H 0.03 1.56 6.25 -2.39 -0.01 1.55 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.19 4.08 7.60 -2.91 -0.02 4.06 16 33 H 0.20 3.78 7.60 -2.91 -0.02 3.75 16 Total: -1.00 -60.34 299.38 5.80 -54.55 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: 1.16 Total: 0.67 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 3.38 Total: -10.70 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -2.85 Total: -75.59 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.70 Total: -7.76 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 1.38 Total: -6.33 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -60.34 5.80 -54.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227891288.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.166 kcal (2) G-P(sol) polarization free energy of solvation -60.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds