Wall clock time and date at job start Tue Mar 31 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86796 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47684 * 270.00703 * 3 2 1 5 5 H 1.48503 * 109.46979 * 30.00361 * 3 2 1 6 6 H 1.48502 * 109.47433 * 150.00274 * 3 2 1 7 7 C 1.39912 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99578 * 175.57700 * 7 2 1 9 9 C 1.41138 * 119.99773 * 355.57266 * 7 2 1 10 10 C 1.40881 * 120.16031 * 214.77661 * 9 7 2 11 11 C 1.36351 * 119.83041 * 180.02562 * 10 9 7 12 12 C 1.39517 * 120.16860 * 0.02562 * 11 10 9 13 13 N 1.39127 * 119.83303 * 179.97438 * 12 11 10 14 14 C 1.34769 * 120.00645 * 35.31580 * 13 12 11 15 15 O 1.21588 * 119.99998 * 355.70941 * 14 13 12 16 16 C 1.47626 * 120.00306 * 175.71146 * 14 13 12 17 17 C 1.40038 * 120.58185 * 0.23268 * 16 14 13 18 18 C 1.38337 * 118.31652 * 180.28539 * 17 16 14 19 19 C 1.38347 * 119.38183 * 359.46043 * 18 17 16 20 20 N 1.31923 * 121.13816 * 0.30354 * 19 18 17 21 21 C 1.31938 * 121.84155 * 359.96988 * 20 19 18 22 22 F 1.35101 * 119.75746 * 180.02562 * 21 20 19 23 23 C 1.39512 * 120.32306 * 0.25333 * 12 11 10 24 24 C 1.36353 * 120.16804 * 359.48448 * 23 12 11 25 25 H 0.97008 * 120.00499 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.08138 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.91527 * 179.97438 * 11 10 9 28 28 H 0.97002 * 119.99495 * 215.31220 * 13 12 11 29 29 H 1.08001 * 120.83827 * 0.04112 * 17 16 14 30 30 H 1.07997 * 120.30477 * 179.73249 * 18 17 16 31 31 H 1.08003 * 119.43011 * 180.27724 * 19 18 17 32 32 H 1.08004 * 119.91129 * 179.74812 * 23 12 11 33 33 H 1.08002 * 120.08662 * 180.25791 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4901 2.0466 -1.4000 5 1 1.4401 2.6526 0.7001 6 1 3.5403 1.4402 0.7000 7 6 2.0082 -1.2117 -0.0005 8 1 3.0858 -1.2129 -0.0727 9 6 1.3056 -2.4322 0.0933 10 6 1.8649 -3.5188 0.7942 11 6 1.1805 -4.6949 0.8802 12 6 -0.0703 -4.8241 0.2757 13 7 -0.7623 -6.0276 0.3674 14 6 -0.6811 -6.7679 1.4907 15 8 0.0574 -6.4241 2.3933 16 6 -1.4888 -7.9962 1.6252 17 6 -2.3397 -8.4062 0.5913 18 6 -3.0796 -9.5614 0.7695 19 6 -2.9496 -10.2758 1.9471 20 7 -2.1371 -9.8711 2.9044 21 6 -1.4140 -8.7739 2.7860 22 9 -0.5950 -8.3987 3.7928 23 6 -0.6278 -3.7543 -0.4249 24 6 0.0424 -2.5703 -0.5149 25 1 -0.4851 0.8401 0.0004 26 1 2.8332 -3.4203 1.2622 27 1 1.6082 -5.5290 1.4168 28 1 -1.3032 -6.3339 -0.3773 29 1 -2.4192 -7.8328 -0.3205 30 1 -3.7491 -9.9047 -0.0053 31 1 -3.5235 -11.1803 2.0852 32 1 -1.5948 -3.8630 -0.8937 33 1 -0.3923 -1.7416 -1.0541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229918085.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:21 Heat of formation + Delta-G solvation = -11.221411 kcal Electronic energy + Delta-G solvation = -20918.564877 eV Core-core repulsion = 17437.970539 eV Total energy + Delta-G solvation = -3480.594338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.98346 -40.60170 -39.29905 -37.25101 -34.59986 -33.47258 -32.61424 -31.29904 -29.63287 -28.87271 -25.66320 -24.49312 -23.58816 -21.81633 -20.99188 -19.95043 -18.42702 -17.61398 -17.50659 -17.24849 -16.22418 -16.08890 -15.36983 -15.17869 -14.71406 -14.57118 -13.95771 -13.80137 -13.34834 -13.28876 -12.98479 -12.90352 -12.66946 -12.17545 -11.76331 -11.41417 -11.19996 -11.06737 -10.77048 -10.36232 -10.28926 -10.01665 -9.56017 -9.51693 -9.29037 -9.19987 -8.95292 -7.59966 -6.92479 -6.66253 -4.38475 0.27968 0.72285 2.51541 2.91759 3.05022 3.07982 3.10744 3.15560 3.22865 3.49821 3.64668 3.95299 4.15334 4.35289 4.46150 4.66003 4.71022 5.07619 5.34329 5.47272 5.58556 5.61646 6.12716 6.21283 6.39909 6.65815 6.84365 7.01697 7.13918 7.23495 7.26701 7.59017 7.65747 7.79334 8.01258 8.15489 8.26572 8.53475 8.62784 8.88287 8.94325 10.24666 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.003323 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.323402 B = 8422.949781 C = 8812.552051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.205 4.205 11 C -0.082 4.082 12 C -0.003 4.003 13 N -0.639 5.639 14 C 0.541 3.459 15 O -0.510 6.510 16 C -0.200 4.200 17 C -0.020 4.020 18 C -0.192 4.192 19 C 0.153 3.847 20 N -0.520 5.520 21 C 0.362 3.638 22 F -0.085 7.085 23 C -0.117 4.117 24 C -0.142 4.142 25 H 0.278 0.722 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.394 0.606 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.092 0.908 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.076 -14.693 -2.729 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.225 4.225 11 C -0.102 4.102 12 C -0.095 4.095 13 N -0.282 5.282 14 C 0.327 3.673 15 O -0.386 6.386 16 C -0.207 4.207 17 C -0.046 4.046 18 C -0.212 4.212 19 C -0.004 4.004 20 N -0.234 5.234 21 C 0.208 3.792 22 F -0.064 7.064 23 C -0.137 4.137 24 C -0.162 4.162 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.228 0.772 29 H 0.167 0.833 30 H 0.168 0.832 31 H 0.188 0.812 32 H 0.110 0.890 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.632 -14.717 -1.257 16.625 hybrid contribution -0.037 1.125 -0.808 1.385 sum -7.669 -13.592 -2.065 15.742 Atomic orbital electron populations 1.69754 1.07319 1.28816 1.37794 1.25896 0.94959 1.01245 0.92497 0.86179 0.80272 0.80376 0.79066 1.19490 1.20269 1.18672 1.19525 0.94812 0.90210 1.44403 0.90510 1.17745 0.92253 0.91998 0.88053 1.20814 1.01319 0.94864 1.05525 1.20417 0.92678 0.97923 0.99187 1.17224 0.94372 0.85554 1.12335 1.42782 1.48557 1.21284 1.15537 1.17764 0.83186 0.83225 0.83158 1.90852 1.38174 1.70042 1.39553 1.21007 1.03938 0.99487 0.96243 1.21780 0.90837 0.94768 0.97206 1.22131 1.02375 0.96639 1.00061 1.22756 0.91945 0.98128 0.87613 1.67152 1.08584 1.14445 1.33232 1.18175 0.87913 0.89267 0.83855 1.91744 1.67535 1.89208 1.57864 1.20296 0.98297 0.93061 1.02086 1.21188 0.97318 0.95528 1.02166 0.91067 0.88452 0.87382 0.77170 0.83301 0.83221 0.81160 0.89025 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.81 10.60 55.55 0.59 -20.22 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.64 16 3 Si 0.92 18.83 29.56 -169.99 -5.03 13.81 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.12 9.02 -37.86 -0.34 -12.47 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.71 5.55 -106.80 -0.59 2.11 16 10 C -0.21 -5.17 9.74 -39.26 -0.38 -5.56 16 11 C -0.08 -1.96 8.61 -39.78 -0.34 -2.31 16 12 C 0.00 -0.06 6.30 -83.60 -0.53 -0.59 16 13 N -0.64 -10.94 5.25 -10.65 -0.06 -11.00 16 14 C 0.54 9.75 7.60 -12.43 -0.09 9.65 16 15 O -0.51 -11.41 12.79 5.29 0.07 -11.35 16 16 C -0.20 -2.78 5.90 -104.76 -0.62 -3.40 16 17 C -0.02 -0.18 9.64 -38.87 -0.37 -0.56 16 18 C -0.19 -1.31 10.09 -39.50 -0.40 -1.71 16 19 C 0.15 1.25 11.17 -17.47 -0.20 1.06 16 20 N -0.52 -6.59 10.36 -13.21 -0.14 -6.73 16 21 C 0.36 5.43 8.41 -16.88 -0.14 5.28 16 22 F -0.09 -1.50 15.59 2.25 0.04 -1.47 16 23 C -0.12 -2.60 9.90 -39.79 -0.39 -3.00 16 24 C -0.14 -3.58 8.61 -39.26 -0.34 -3.92 16 25 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 26 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 27 H 0.11 2.57 6.22 -52.48 -0.33 2.24 16 28 H 0.39 4.98 6.93 -40.82 -0.28 4.69 16 29 H 0.15 0.94 6.53 -52.49 -0.34 0.60 16 30 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 31 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.13 3.44 6.13 -52.49 -0.32 3.12 16 LS Contribution 295.63 15.07 4.46 4.46 Total: -1.00 -32.03 295.63 -7.42 -39.45 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -2.51 Total: 6.80 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -4.84 Total: -13.74 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.40 Total: -37.95 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.35 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.03 -7.42 -39.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229918085.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.224 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds