Wall clock time and date at job start Tue Mar 31 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86796 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47684 * 270.00703 * 3 2 1 5 5 H 1.48503 * 109.46979 * 30.00361 * 3 2 1 6 6 H 1.48502 * 109.47433 * 150.00274 * 3 2 1 7 7 C 1.39912 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99578 * 175.57700 * 7 2 1 9 9 C 1.41138 * 119.99773 * 355.57266 * 7 2 1 10 10 C 1.40881 * 120.16031 * 214.77661 * 9 7 2 11 11 C 1.36351 * 119.83041 * 180.02562 * 10 9 7 12 12 C 1.39517 * 120.16860 * 0.02562 * 11 10 9 13 13 N 1.39127 * 119.83303 * 179.97438 * 12 11 10 14 14 C 1.34769 * 120.00645 * 35.31580 * 13 12 11 15 15 O 1.21588 * 119.99998 * 355.70941 * 14 13 12 16 16 C 1.47626 * 120.00306 * 175.71146 * 14 13 12 17 17 C 1.40038 * 120.58185 * 0.23268 * 16 14 13 18 18 C 1.38337 * 118.31652 * 180.28539 * 17 16 14 19 19 C 1.38347 * 119.38183 * 359.46043 * 18 17 16 20 20 N 1.31923 * 121.13816 * 0.30354 * 19 18 17 21 21 C 1.31938 * 121.84155 * 359.96988 * 20 19 18 22 22 F 1.35101 * 119.75746 * 180.02562 * 21 20 19 23 23 C 1.39512 * 120.32306 * 0.25333 * 12 11 10 24 24 C 1.36353 * 120.16804 * 359.48448 * 23 12 11 25 25 H 0.97008 * 120.00499 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.08138 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.91527 * 179.97438 * 11 10 9 28 28 H 0.97002 * 119.99495 * 215.31220 * 13 12 11 29 29 H 1.08001 * 120.83827 * 0.04112 * 17 16 14 30 30 H 1.07997 * 120.30477 * 179.73249 * 18 17 16 31 31 H 1.08003 * 119.43011 * 180.27724 * 19 18 17 32 32 H 1.08004 * 119.91129 * 179.74812 * 23 12 11 33 33 H 1.08002 * 120.08662 * 180.25791 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4901 2.0466 -1.4000 5 1 1.4401 2.6526 0.7001 6 1 3.5403 1.4402 0.7000 7 6 2.0082 -1.2117 -0.0005 8 1 3.0858 -1.2129 -0.0727 9 6 1.3056 -2.4322 0.0933 10 6 1.8649 -3.5188 0.7942 11 6 1.1805 -4.6949 0.8802 12 6 -0.0703 -4.8241 0.2757 13 7 -0.7623 -6.0276 0.3674 14 6 -0.6811 -6.7679 1.4907 15 8 0.0574 -6.4241 2.3933 16 6 -1.4888 -7.9962 1.6252 17 6 -2.3397 -8.4062 0.5913 18 6 -3.0796 -9.5614 0.7695 19 6 -2.9496 -10.2758 1.9471 20 7 -2.1371 -9.8711 2.9044 21 6 -1.4140 -8.7739 2.7860 22 9 -0.5950 -8.3987 3.7928 23 6 -0.6278 -3.7543 -0.4249 24 6 0.0424 -2.5703 -0.5149 25 1 -0.4851 0.8401 0.0004 26 1 2.8332 -3.4203 1.2622 27 1 1.6082 -5.5290 1.4168 28 1 -1.3032 -6.3339 -0.3773 29 1 -2.4192 -7.8328 -0.3205 30 1 -3.7491 -9.9047 -0.0053 31 1 -3.5235 -11.1803 2.0852 32 1 -1.5948 -3.8630 -0.8937 33 1 -0.3923 -1.7416 -1.0541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229918085.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:20 Heat of formation + Delta-G solvation = -32.393872 kcal Electronic energy + Delta-G solvation = -20919.482984 eV Core-core repulsion = 17437.970539 eV Total energy + Delta-G solvation = -3481.512445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.13033 -41.73243 -40.56862 -39.00958 -36.28095 -34.98016 -33.81509 -32.18620 -31.50287 -30.66179 -27.22156 -25.67394 -24.56156 -23.47098 -22.70339 -21.52651 -19.54895 -19.26393 -18.75466 -18.44620 -17.60470 -17.34015 -16.98534 -16.24207 -16.12842 -15.87173 -15.66196 -14.91952 -14.78142 -14.53288 -14.20902 -14.19211 -14.01886 -13.64810 -13.59545 -13.25023 -12.90457 -12.80176 -12.49926 -11.84489 -11.42779 -11.29665 -11.21869 -11.13500 -10.80078 -10.62950 -10.14298 -9.49556 -8.77391 -8.52609 -6.35210 -0.62298 -0.04314 0.79847 1.12025 1.39639 1.45422 1.53613 1.77945 2.03594 2.23697 2.45478 2.57676 2.79347 3.32222 3.52677 3.67002 3.73345 3.90492 4.32965 4.39377 4.49996 4.65673 4.74154 4.90040 4.94142 5.08824 5.11984 5.29182 5.38742 5.46963 5.67430 5.86461 5.97662 6.10436 6.36424 6.46630 6.57418 6.65800 6.94620 6.96062 7.22337 8.40126 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.003323 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.323402 B = 8422.949781 C = 8812.552051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.029 3.971 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.497 4.497 8 H 0.072 0.928 9 C 0.071 3.929 10 C -0.223 4.223 11 C -0.097 4.097 12 C 0.015 3.985 13 N -0.627 5.627 14 C 0.541 3.459 15 O -0.563 6.563 16 C -0.220 4.220 17 C -0.011 4.011 18 C -0.162 4.162 19 C 0.158 3.842 20 N -0.543 5.543 21 C 0.328 3.672 22 F -0.117 7.117 23 C -0.111 4.111 24 C -0.159 4.159 25 H 0.286 0.714 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.419 0.581 29 H 0.183 0.817 30 H 0.204 0.796 31 H 0.216 0.784 32 H 0.132 0.868 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.913 -16.464 -4.644 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.068 3.932 10 C -0.243 4.243 11 C -0.117 4.117 12 C -0.079 4.079 13 N -0.273 5.273 14 C 0.330 3.670 15 O -0.443 6.443 16 C -0.227 4.227 17 C -0.036 4.036 18 C -0.181 4.181 19 C 0.001 3.999 20 N -0.258 5.258 21 C 0.175 3.825 22 F -0.096 7.096 23 C -0.131 4.131 24 C -0.179 4.179 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.259 0.741 29 H 0.200 0.800 30 H 0.221 0.779 31 H 0.232 0.768 32 H 0.150 0.850 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.505 -16.533 -3.209 19.849 hybrid contribution 0.657 1.359 -0.234 1.527 sum -9.848 -15.174 -3.443 18.414 Atomic orbital electron populations 1.69806 1.08521 1.30066 1.38189 1.26726 0.95835 1.04253 0.91520 0.85105 0.78629 0.75804 0.79548 1.18222 1.19387 1.18866 1.19739 0.94880 0.91372 1.46780 0.90971 1.18047 0.93446 0.92528 0.89155 1.20914 1.01659 0.95526 1.06166 1.20518 0.93925 0.97395 0.99829 1.17266 0.93487 0.87174 1.09948 1.42586 1.48361 1.19708 1.16612 1.18422 0.82427 0.83984 0.82202 1.90826 1.40517 1.71601 1.41372 1.20673 1.05853 0.98229 0.97965 1.22234 0.89132 0.95668 0.96615 1.22717 1.00833 0.94366 1.00225 1.23720 0.90119 0.99059 0.86977 1.67212 1.09495 1.13757 1.35327 1.18474 0.89186 0.90927 0.83942 1.91651 1.68875 1.89789 1.59326 1.20569 0.99396 0.91751 1.01406 1.21193 0.97375 0.96549 1.02763 0.90362 0.88790 0.87865 0.74133 0.80019 0.77878 0.76769 0.85012 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.87 10.60 21.82 0.23 -43.64 16 2 C 0.03 1.48 5.42 85.24 0.46 1.94 16 3 Si 0.99 39.11 29.56 68.60 2.03 41.13 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.50 -27.41 9.02 23.39 0.21 -27.20 16 8 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 9 C 0.07 3.90 5.55 -21.27 -0.12 3.79 16 10 C -0.22 -11.82 9.74 22.48 0.22 -11.60 16 11 C -0.10 -4.78 8.61 22.14 0.19 -4.59 16 12 C 0.01 0.63 6.30 38.60 0.24 0.88 16 13 N -0.63 -20.47 5.25 -305.89 -1.61 -22.08 16 14 C 0.54 19.44 7.60 86.72 0.66 20.09 16 15 O -0.56 -26.34 12.79 -3.99 -0.05 -26.39 16 16 C -0.22 -5.82 5.90 -19.95 -0.12 -5.94 16 17 C -0.01 -0.15 9.64 22.73 0.22 0.07 16 18 C -0.16 -1.20 10.09 22.32 0.23 -0.98 16 19 C 0.16 1.84 11.17 84.71 0.95 2.79 16 20 N -0.54 -12.81 10.36 -195.70 -2.03 -14.84 16 21 C 0.33 9.84 8.41 85.09 0.72 10.56 16 22 F -0.12 -4.43 15.59 44.97 0.70 -3.73 16 23 C -0.11 -4.83 9.90 22.14 0.22 -4.61 16 24 C -0.16 -8.16 8.61 22.48 0.19 -7.96 16 25 H 0.29 13.55 8.30 -92.70 -0.77 12.78 16 26 H 0.09 4.85 8.06 -2.91 -0.02 4.82 16 27 H 0.10 5.17 6.22 -2.91 -0.02 5.15 16 28 H 0.42 9.09 6.93 -92.71 -0.64 8.45 16 29 H 0.18 1.20 6.53 -2.91 -0.02 1.18 16 30 H 0.20 -0.52 8.06 -2.91 -0.02 -0.54 16 31 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 32 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.12 6.47 6.13 -2.91 -0.02 6.46 16 Total: -1.00 -77.34 295.63 4.08 -73.26 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.54 Total: 19.05 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 4.27 Total: -22.77 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -3.40 Total: -80.56 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.70 Total: -3.73 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Total: -77.34 4.08 -73.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229918085.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.865 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds