Wall clock time and date at job start Tue Mar 31 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00037 * 2 1 4 4 H 1.48506 * 109.47611 * 270.00167 * 3 2 1 5 5 H 1.48506 * 109.47345 * 29.99933 * 3 2 1 6 6 H 1.48501 * 109.47400 * 149.99749 * 3 2 1 7 7 C 1.38649 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00023 * 174.59893 * 9 7 2 11 11 C 1.38954 * 120.02912 * 173.82368 * 10 9 7 12 12 C 1.38126 * 120.06511 * 179.71502 * 11 10 9 13 13 C 1.38206 * 120.13712 * 0.55675 * 12 11 10 14 14 C 1.38918 * 120.06796 * 359.71621 * 13 12 11 15 15 N 1.39948 * 120.03534 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00173 * 326.33923 * 15 14 13 17 17 O 1.21591 * 119.99993 * 354.73754 * 16 15 14 18 18 N 1.34780 * 120.00018 * 174.73011 * 16 15 14 19 19 C 1.46493 * 119.99752 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47038 * 180.02562 * 19 18 16 21 21 F 1.39902 * 109.46918 * 299.99913 * 20 19 18 22 22 F 1.39899 * 109.46982 * 59.99673 * 20 19 18 23 23 C 1.38729 * 120.03317 * 354.08934 * 10 9 7 24 24 H 0.97008 * 119.99966 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.96618 * 359.96966 * 11 10 9 26 26 H 1.08001 * 119.93332 * 180.27252 * 12 11 10 27 27 H 1.08001 * 119.96758 * 179.74148 * 13 12 11 28 28 H 0.97003 * 119.99302 * 146.33699 * 15 14 13 29 29 H 0.97003 * 119.99703 * 0.02562 * 18 16 15 30 30 H 1.09005 * 109.47586 * 299.99949 * 19 18 16 31 31 H 1.08997 * 109.47586 * 60.00395 * 19 18 16 32 32 H 1.08999 * 109.47429 * 179.97438 * 20 19 18 33 33 H 1.08004 * 120.07097 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0694 -3.5042 -0.1149 11 6 1.4553 -4.7448 0.0067 12 6 2.2011 -5.9010 -0.1154 13 6 3.5616 -5.8279 -0.3474 14 6 4.1822 -4.5906 -0.4643 15 7 5.5598 -4.5173 -0.6997 16 6 6.3834 -5.4464 -0.1754 17 8 5.9437 -6.2921 0.5796 18 7 7.6944 -5.4383 -0.4880 19 6 8.5895 -6.4485 0.0815 20 6 10.0126 -6.2155 -0.4298 21 9 10.0283 -6.3120 -1.8254 22 9 10.4432 -4.9410 -0.0457 23 6 3.4348 -3.4274 -0.3479 24 1 -0.4850 0.8401 -0.0004 25 1 0.3932 -4.8050 0.1928 26 1 1.7209 -6.8641 -0.0249 27 1 4.1428 -6.7336 -0.4382 28 1 5.9218 -3.7978 -1.2403 29 1 8.0452 -4.7634 -1.0901 30 1 8.5776 -6.3730 1.1689 31 1 8.2537 -7.4414 -0.2175 32 1 10.6787 -6.9668 -0.0058 33 1 3.9149 -2.4643 -0.4389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267680013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:33 Heat of formation + Delta-G solvation = -127.859265 kcal Electronic energy + Delta-G solvation = -21613.913880 eV Core-core repulsion = 17697.492520 eV Total energy + Delta-G solvation = -3916.421360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.42678 -47.41767 -40.41355 -38.78021 -36.67959 -35.03112 -34.25640 -32.23431 -30.26950 -29.07342 -28.17836 -25.30538 -23.70231 -22.05399 -21.79430 -20.60359 -18.94711 -18.06473 -17.82901 -17.66753 -17.54415 -16.47755 -15.69800 -15.61259 -15.05534 -14.81487 -14.48513 -14.33632 -14.12688 -13.98475 -13.78061 -13.56714 -13.27310 -12.96849 -12.87727 -12.35525 -11.74803 -11.61873 -11.53119 -11.15346 -11.02974 -10.74710 -10.43555 -10.15878 -9.67651 -9.48563 -9.42503 -8.80016 -7.71545 -7.13864 -6.44515 -4.04218 2.04155 2.38228 2.48247 3.11278 3.12768 3.17650 3.22150 3.23461 3.71004 3.96140 4.03762 4.11888 4.36105 4.61114 5.09749 5.11419 5.11990 5.28673 5.68650 5.98197 6.05682 6.07938 6.24511 6.24840 6.50468 6.74960 7.00183 7.09888 7.23111 7.33165 7.43500 7.82436 7.91647 8.00081 8.51959 9.01011 9.71570 10.73593 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.003688 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.245495 B = 7590.723717 C = 8871.579982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.090 0.910 9 O -0.176 6.176 10 C 0.169 3.831 11 C -0.201 4.201 12 C -0.063 4.063 13 C -0.205 4.205 14 C 0.197 3.803 15 N -0.679 5.679 16 C 0.707 3.293 17 O -0.568 6.568 18 N -0.747 5.747 19 C 0.091 3.909 20 C 0.254 3.746 21 F -0.201 7.201 22 F -0.201 7.201 23 C -0.257 4.257 24 H 0.270 0.730 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.404 0.596 29 H 0.401 0.599 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.513 -10.538 -2.179 21.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.080 6.080 10 C 0.115 3.885 11 C -0.221 4.221 12 C -0.082 4.082 13 C -0.226 4.226 14 C 0.104 3.896 15 N -0.325 5.325 16 C 0.408 3.592 17 O -0.444 6.444 18 N -0.405 5.405 19 C -0.035 4.035 20 C 0.200 3.800 21 F -0.183 7.183 22 F -0.182 7.182 23 C -0.279 4.279 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.134 0.866 27 H 0.137 0.863 28 H 0.239 0.761 29 H 0.236 0.764 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.732 -11.093 -1.476 20.968 hybrid contribution 1.027 1.666 -0.648 2.062 sum 18.759 -9.427 -2.124 21.102 Atomic orbital electron populations 1.70037 1.05928 1.27629 1.46147 1.25266 0.95826 0.98766 0.96596 0.85735 0.78945 0.80226 0.78648 1.19911 1.20237 1.19275 1.21271 0.91665 0.80904 1.52991 0.89268 1.84021 1.33891 1.11366 1.78694 1.19063 0.89438 0.88115 0.91894 1.20250 1.00160 0.89996 1.11662 1.20524 0.93071 0.96936 0.97632 1.20551 0.94562 0.95881 1.11591 1.17176 0.79931 0.93983 0.98540 1.42543 1.05869 1.29645 1.54488 1.15777 0.80404 0.82358 0.80675 1.90963 1.75139 1.39508 1.38808 1.44822 1.07204 1.35160 1.53327 1.22318 0.86153 0.94193 1.00792 1.22288 0.97192 0.83589 0.76929 1.93025 1.97572 1.96267 1.31423 1.93029 1.91229 1.43269 1.90719 1.20782 0.94806 0.97156 1.15176 0.92025 0.86369 0.86605 0.86264 0.76141 0.76438 0.88309 0.88303 0.85485 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.22 13.67 55.48 0.76 -24.47 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.89 9.44 30.88 0.29 -10.60 16 8 H 0.09 2.29 5.30 -52.49 -0.28 2.01 16 9 O -0.18 -5.02 9.76 0.03 0.00 -5.02 16 10 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 11 C -0.20 -4.33 9.99 -39.36 -0.39 -4.72 16 12 C -0.06 -1.19 10.03 -39.63 -0.40 -1.59 16 13 C -0.20 -3.96 8.65 -39.34 -0.34 -4.31 16 14 C 0.20 3.81 6.27 -83.71 -0.52 3.29 16 15 N -0.68 -10.37 5.35 -14.24 -0.08 -10.45 16 16 C 0.71 10.55 8.30 -86.92 -0.72 9.83 16 17 O -0.57 -10.47 14.05 5.29 0.07 -10.39 16 18 N -0.75 -7.78 5.42 -65.23 -0.35 -8.13 16 19 C 0.09 0.70 5.91 -4.05 -0.02 0.68 16 20 C 0.25 1.46 5.42 37.16 0.20 1.66 16 21 F -0.20 -1.59 17.20 2.25 0.04 -1.56 16 22 F -0.20 -1.64 17.20 2.25 0.04 -1.60 16 23 C -0.26 -5.60 9.04 -39.21 -0.35 -5.95 16 24 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 26 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.12 2.26 6.43 -52.49 -0.34 1.92 16 28 H 0.40 4.88 8.83 -40.82 -0.36 4.52 16 29 H 0.40 3.44 8.38 -40.82 -0.34 3.10 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.13 2.76 5.71 -52.48 -0.30 2.46 16 LS Contribution 302.21 15.07 4.55 4.55 Total: -1.00 -34.42 302.21 -5.47 -39.89 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -2.87 Total: 8.69 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.62 Total: -6.87 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.33 Total: -43.05 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.07 Total: -15.42 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.08 Total: -3.15 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.42 -5.47 -39.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267680013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.967 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds