Wall clock time and date at job start Tue Mar 31 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00037 * 2 1 4 4 H 1.48506 * 109.47611 * 270.00167 * 3 2 1 5 5 H 1.48506 * 109.47345 * 29.99933 * 3 2 1 6 6 H 1.48501 * 109.47400 * 149.99749 * 3 2 1 7 7 C 1.38649 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00023 * 174.59893 * 9 7 2 11 11 C 1.38954 * 120.02912 * 173.82368 * 10 9 7 12 12 C 1.38126 * 120.06511 * 179.71502 * 11 10 9 13 13 C 1.38206 * 120.13712 * 0.55675 * 12 11 10 14 14 C 1.38918 * 120.06796 * 359.71621 * 13 12 11 15 15 N 1.39948 * 120.03534 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00173 * 326.33923 * 15 14 13 17 17 O 1.21591 * 119.99993 * 354.73754 * 16 15 14 18 18 N 1.34780 * 120.00018 * 174.73011 * 16 15 14 19 19 C 1.46493 * 119.99752 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47038 * 180.02562 * 19 18 16 21 21 F 1.39902 * 109.46918 * 299.99913 * 20 19 18 22 22 F 1.39899 * 109.46982 * 59.99673 * 20 19 18 23 23 C 1.38729 * 120.03317 * 354.08934 * 10 9 7 24 24 H 0.97008 * 119.99966 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.96618 * 359.96966 * 11 10 9 26 26 H 1.08001 * 119.93332 * 180.27252 * 12 11 10 27 27 H 1.08001 * 119.96758 * 179.74148 * 13 12 11 28 28 H 0.97003 * 119.99302 * 146.33699 * 15 14 13 29 29 H 0.97003 * 119.99703 * 0.02562 * 18 16 15 30 30 H 1.09005 * 109.47586 * 299.99949 * 19 18 16 31 31 H 1.08997 * 109.47586 * 60.00395 * 19 18 16 32 32 H 1.08999 * 109.47429 * 179.97438 * 20 19 18 33 33 H 1.08004 * 120.07097 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0694 -3.5042 -0.1149 11 6 1.4553 -4.7448 0.0067 12 6 2.2011 -5.9010 -0.1154 13 6 3.5616 -5.8279 -0.3474 14 6 4.1822 -4.5906 -0.4643 15 7 5.5598 -4.5173 -0.6997 16 6 6.3834 -5.4464 -0.1754 17 8 5.9437 -6.2921 0.5796 18 7 7.6944 -5.4383 -0.4880 19 6 8.5895 -6.4485 0.0815 20 6 10.0126 -6.2155 -0.4298 21 9 10.0283 -6.3120 -1.8254 22 9 10.4432 -4.9410 -0.0457 23 6 3.4348 -3.4274 -0.3479 24 1 -0.4850 0.8401 -0.0004 25 1 0.3932 -4.8050 0.1928 26 1 1.7209 -6.8641 -0.0249 27 1 4.1428 -6.7336 -0.4382 28 1 5.9218 -3.7978 -1.2403 29 1 8.0452 -4.7634 -1.0901 30 1 8.5776 -6.3730 1.1689 31 1 8.2537 -7.4414 -0.2175 32 1 10.6787 -6.9668 -0.0058 33 1 3.9149 -2.4643 -0.4389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267680013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:33 Heat of formation + Delta-G solvation = -152.882029 kcal Electronic energy + Delta-G solvation = -21614.998948 eV Core-core repulsion = 17697.492520 eV Total energy + Delta-G solvation = -3917.506428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.95807 -47.96215 -41.72316 -40.46585 -38.31704 -36.06122 -35.68423 -34.22316 -31.39233 -30.61465 -29.53579 -27.28603 -24.57521 -23.49625 -23.16567 -21.94294 -20.29258 -19.48888 -19.22143 -18.39363 -18.36613 -17.54448 -16.94974 -16.84134 -16.59009 -16.19511 -15.94330 -15.64127 -15.47118 -15.21525 -14.96722 -14.57205 -14.36103 -14.28388 -13.98007 -13.54543 -13.41835 -13.24407 -12.77715 -12.68852 -12.40749 -12.11167 -12.07181 -11.59144 -11.32464 -11.18425 -10.72668 -10.36754 -9.33608 -8.84605 -8.45971 -6.14678 0.44585 0.71573 1.36240 1.40532 1.45730 1.53557 1.96981 2.18411 2.73151 2.85105 3.00704 3.18596 3.31733 3.50633 3.60595 3.93027 4.12282 4.33955 4.44938 4.52010 4.55401 4.64360 4.72550 5.02323 5.11560 5.16394 5.31613 5.46871 5.68152 5.69180 5.83745 6.02506 6.20664 6.79953 6.98558 7.33671 7.78369 8.77126 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.003688 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.245495 B = 7590.723717 C = 8871.579982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.226 6.226 10 C 0.135 3.865 11 C -0.214 4.214 12 C -0.050 4.050 13 C -0.198 4.198 14 C 0.204 3.796 15 N -0.674 5.674 16 C 0.706 3.294 17 O -0.604 6.604 18 N -0.732 5.732 19 C 0.083 3.917 20 C 0.259 3.741 21 F -0.214 7.214 22 F -0.215 7.215 23 C -0.262 4.262 24 H 0.273 0.727 25 H 0.120 0.880 26 H 0.155 0.845 27 H 0.132 0.868 28 H 0.419 0.581 29 H 0.412 0.588 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.176 0.824 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.462 -11.584 -2.423 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.132 6.132 10 C 0.084 3.916 11 C -0.234 4.234 12 C -0.069 4.069 13 C -0.219 4.219 14 C 0.109 3.891 15 N -0.322 5.322 16 C 0.407 3.593 17 O -0.482 6.482 18 N -0.389 5.389 19 C -0.042 4.042 20 C 0.206 3.794 21 F -0.195 7.195 22 F -0.197 7.197 23 C -0.284 4.284 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.173 0.827 27 H 0.149 0.851 28 H 0.257 0.743 29 H 0.248 0.752 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.192 0.808 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.773 -12.174 -1.751 24.142 hybrid contribution 0.255 1.686 -0.584 1.802 sum 21.029 -10.488 -2.335 23.615 Atomic orbital electron populations 1.70183 1.08025 1.28819 1.48704 1.26562 0.96816 1.02675 0.95813 0.84600 0.77776 0.74626 0.79290 1.18608 1.19749 1.17779 1.21786 0.92456 0.81413 1.53303 0.88134 1.83985 1.35511 1.12486 1.81257 1.19587 0.90707 0.88017 0.93280 1.20488 1.00720 0.90031 1.12182 1.20924 0.92909 0.97605 0.95422 1.20868 0.94839 0.96246 1.09960 1.17185 0.81720 0.93160 0.97015 1.42428 1.04479 1.30553 1.54697 1.15892 0.81519 0.81650 0.80257 1.90937 1.76114 1.40785 1.40395 1.44775 1.05832 1.35674 1.52648 1.22621 0.86737 0.93729 1.01079 1.22639 0.96663 0.83913 0.76211 1.93005 1.97572 1.96293 1.32645 1.93005 1.91264 1.44593 1.90793 1.20801 0.94143 0.98086 1.15352 0.91813 0.86206 0.82711 0.85057 0.74332 0.75215 0.87981 0.87530 0.80754 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.05 13.67 21.61 0.30 -55.76 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 3 Si 1.02 42.24 29.55 68.60 2.03 44.27 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.41 -23.81 9.44 67.92 0.64 -23.17 16 8 H 0.10 5.28 5.30 -2.91 -0.02 5.27 16 9 O -0.23 -13.53 9.76 -22.80 -0.22 -13.75 16 10 C 0.14 6.78 6.64 22.56 0.15 6.92 16 11 C -0.21 -9.30 9.99 22.41 0.22 -9.08 16 12 C -0.05 -1.81 10.03 22.24 0.22 -1.58 16 13 C -0.20 -7.26 8.65 22.43 0.19 -7.07 16 14 C 0.20 7.64 6.27 38.13 0.24 7.88 16 15 N -0.67 -19.33 5.35 -317.22 -1.70 -21.02 16 16 C 0.71 19.52 8.30 179.05 1.49 21.01 16 17 O -0.60 -20.98 14.05 -4.00 -0.06 -21.03 16 18 N -0.73 -13.39 5.42 -478.54 -2.59 -15.99 16 19 C 0.08 1.04 5.91 86.38 0.51 1.55 16 20 C 0.26 2.12 5.42 71.98 0.39 2.51 16 21 F -0.21 -2.78 17.20 44.97 0.77 -2.00 16 22 F -0.22 -2.93 17.20 44.97 0.77 -2.15 16 23 C -0.26 -11.46 9.04 22.51 0.20 -11.26 16 24 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 25 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 26 H 0.16 4.34 8.06 -2.91 -0.02 4.32 16 27 H 0.13 4.60 6.43 -2.91 -0.02 4.58 16 28 H 0.42 9.32 8.83 -92.71 -0.82 8.50 16 29 H 0.41 5.98 8.38 -92.71 -0.78 5.21 16 30 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.18 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.13 5.52 5.71 -2.91 -0.02 5.50 16 Total: -1.00 -77.75 302.21 3.63 -74.12 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -0.40 Total: 26.31 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 4.73 Total: -13.00 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -3.99 Total: -92.76 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.28 Total: -34.78 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 1.55 Total: -4.16 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -77.75 3.63 -74.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267680013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.757 kcal (2) G-P(sol) polarization free energy of solvation -77.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds