Wall clock time and date at job start Tue Mar 31 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99705 * 2 1 4 4 H 1.48497 * 109.46424 * 269.99741 * 3 2 1 5 5 H 1.48498 * 109.46986 * 29.99618 * 3 2 1 6 6 H 1.48503 * 109.47043 * 150.00096 * 3 2 1 7 7 C 1.37878 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46700 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.40024 * 111.00017 * 180.02562 * 12 11 10 14 14 C 1.39000 * 120.08336 * 299.72784 * 13 12 11 15 15 F 1.35100 * 120.04231 * 359.97438 * 14 13 12 16 16 C 1.38327 * 119.91023 * 179.69881 * 14 13 12 17 17 C 1.38272 * 120.08796 * 0.57397 * 16 14 13 18 18 N 1.48026 * 119.91756 * 179.74547 * 17 16 14 19 19 O 1.21797 * 120.00082 * 179.97438 * 18 17 16 20 20 O 1.21798 * 119.99804 * 359.97438 * 18 17 16 21 21 C 1.38273 * 120.17027 * 359.72298 * 17 16 14 22 22 C 1.38328 * 120.08747 * 359.97438 * 21 17 16 23 23 F 1.35106 * 120.04431 * 180.02562 * 22 21 17 24 24 H 0.97002 * 120.00555 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47135 * 59.98994 * 9 7 2 26 26 H 1.09005 * 109.46741 * 299.99708 * 9 7 2 27 27 H 1.08995 * 109.47485 * 60.00257 * 10 9 7 28 28 H 1.08996 * 109.47010 * 299.99049 * 10 9 7 29 29 H 1.09004 * 109.46889 * 60.00145 * 11 10 9 30 30 H 1.08995 * 109.47384 * 299.99786 * 11 10 9 31 31 H 1.00901 * 111.00067 * 303.95263 * 12 11 10 32 32 H 1.08008 * 119.95801 * 180.31965 * 16 14 13 33 33 H 1.08004 * 119.95783 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 1.7677 -7.3345 0.0005 14 6 0.9117 -7.6629 1.0453 15 9 0.7226 -6.7949 2.0631 16 6 0.2493 -8.8773 1.0385 17 6 0.4470 -9.7689 0.0003 18 7 -0.2594 -11.0698 -0.0003 19 8 -0.0868 -11.8561 -0.9142 20 8 -1.0133 -11.3537 0.9133 21 6 1.3025 -9.4484 -1.0376 22 6 1.9637 -8.2334 -1.0413 23 9 2.7990 -7.9209 -2.0561 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8535 -5.0450 -0.8886 30 1 0.8542 -5.0446 0.8914 31 1 3.0694 -6.0365 -0.7813 32 1 -0.4200 -9.1311 1.8473 33 1 1.4547 -10.1476 -1.8466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269656209.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:00 Heat of formation + Delta-G solvation = -74.535735 kcal Electronic energy + Delta-G solvation = -21600.505512 eV Core-core repulsion = 17686.396434 eV Total energy + Delta-G solvation = -3914.109078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.66237 -49.44077 -42.49391 -39.80260 -36.96878 -36.88208 -33.94648 -32.03941 -31.24821 -30.24446 -27.19328 -25.66312 -24.01471 -23.12003 -22.32583 -20.56174 -20.05604 -19.21725 -18.06224 -17.88399 -17.33695 -17.26992 -16.66789 -16.34549 -16.24792 -15.82790 -15.41248 -15.11679 -14.60344 -14.37725 -13.58620 -13.39142 -13.09906 -12.74294 -12.43728 -12.22472 -11.86928 -11.80399 -11.55700 -11.43934 -11.07006 -10.86712 -10.70329 -10.56120 -9.92152 -9.64686 -9.58395 -9.23357 -8.65775 -8.45854 -6.10675 -4.13937 -0.67156 0.11570 0.82413 0.92660 2.42277 3.04267 3.25393 3.32053 3.34284 3.37033 3.48485 3.80010 3.99142 4.33640 4.37500 4.69740 4.80438 4.95115 5.15892 5.24152 5.27045 5.29618 5.61432 5.85191 5.97307 6.18861 6.35057 6.62531 6.69252 6.88615 7.30496 7.51220 7.62170 7.87063 8.28191 8.92391 9.51000 11.00630 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.033012 B = 0.003032 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.982507 B = 9232.074111 C = 9675.099396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.047 3.953 12 N -0.618 5.618 13 C 0.121 3.879 14 C 0.107 3.893 15 F -0.102 7.102 16 C -0.071 4.071 17 C -0.033 4.033 18 N 0.035 4.965 19 O -0.156 6.156 20 O -0.153 6.153 21 C -0.068 4.068 22 C 0.070 3.930 23 F -0.113 7.113 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.371 0.629 32 H 0.174 0.826 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -19.592 -0.844 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.147 4.147 11 C -0.076 4.076 12 N -0.240 5.240 13 C 0.015 3.985 14 C 0.083 3.917 15 F -0.080 7.080 16 C -0.092 4.092 17 C -0.118 4.118 18 N 0.556 4.444 19 O -0.371 6.371 20 O -0.369 6.369 21 C -0.089 4.089 22 C 0.045 3.955 23 F -0.091 7.091 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.195 0.805 32 H 0.191 0.809 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.480 -18.635 -0.176 18.800 hybrid contribution 0.245 0.792 -0.821 1.166 sum 2.725 -17.844 -0.997 18.078 Atomic orbital electron populations 1.69953 1.06092 1.26816 1.50488 1.25027 0.94871 0.99377 0.95130 0.86565 0.79855 0.83281 0.78149 1.20621 1.21132 1.19808 1.21180 0.93065 0.90817 1.51098 0.92551 1.19057 0.93834 0.91048 0.97472 1.21721 0.99534 0.91922 1.01518 1.22701 0.93564 0.88846 1.02539 1.57607 1.18914 0.99682 1.47769 1.19402 0.93185 0.94108 0.91815 1.16364 0.99866 0.88662 0.86774 1.91622 1.93621 1.67052 1.55683 1.20803 0.98869 0.90822 0.98672 1.20092 1.03968 0.87372 1.00402 1.43289 0.99407 1.01835 0.99901 1.94560 1.68682 1.45152 1.28750 1.94570 1.32237 1.81349 1.28779 1.20731 0.93604 0.96022 0.98554 1.16855 0.96815 0.95245 0.86537 1.91586 1.68413 1.92688 1.56456 0.92860 0.96555 0.96247 0.91863 0.92907 0.93212 0.89088 0.80487 0.80883 0.81126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.02 5.41 -26.73 -0.14 -2.17 16 11 C 0.05 0.71 5.36 -3.82 -0.02 0.69 16 12 N -0.62 -7.71 6.50 -58.21 -0.38 -8.09 16 13 C 0.12 1.33 5.79 -83.55 -0.48 0.85 16 14 C 0.11 1.15 6.99 -39.27 -0.27 0.87 16 15 F -0.10 -1.27 15.12 2.25 0.03 -1.24 16 16 C -0.07 -0.65 9.53 -39.54 -0.38 -1.03 16 17 C -0.03 -0.32 6.85 -79.92 -0.55 -0.87 16 18 N 0.04 0.40 4.45 33.98 0.15 0.55 16 19 O -0.16 -1.83 18.44 -29.46 -0.54 -2.38 16 20 O -0.15 -1.83 18.44 -29.46 -0.54 -2.37 16 21 C -0.07 -0.59 9.53 -39.54 -0.38 -0.97 16 22 C 0.07 0.66 7.29 -39.27 -0.29 0.38 16 23 F -0.11 -1.10 16.26 2.25 0.04 -1.06 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.42 6.08 -51.93 -0.32 1.10 16 31 H 0.37 4.15 7.65 -39.29 -0.30 3.85 16 32 H 0.17 1.32 7.60 -52.48 -0.40 0.92 16 33 H 0.17 1.18 7.60 -52.48 -0.40 0.78 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -29.22 305.35 -7.06 -36.27 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -3.07 Total: -2.05 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.06 Total: -14.89 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.51 Total: -32.98 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -1.09 Total: -4.75 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.07 Total: -2.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.22 -7.06 -36.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269656209.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.262 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds