Wall clock time and date at job start Tue Mar 31 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36780 * 120.00302 * 2 1 4 4 H 1.08002 * 119.99621 * 201.72442 * 3 2 1 5 5 C 1.39099 * 120.00231 * 21.43930 * 3 2 1 6 6 N 1.31331 * 119.99991 * 21.41027 * 5 3 2 7 7 Si 1.86800 * 120.00441 * 201.40908 * 5 3 2 8 8 H 1.48494 * 109.46867 * 59.99766 * 7 5 3 9 9 H 1.48496 * 109.47402 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46634 * 300.00060 * 7 5 3 11 11 C 1.34780 * 119.99624 * 179.97438 * 2 1 3 12 12 O 1.21576 * 119.99902 * 173.69680 * 11 2 1 13 13 C 1.47984 * 120.00298 * 353.70658 * 11 2 1 14 14 C 1.39276 * 119.69870 * 173.62138 * 13 11 2 15 15 C 1.38695 * 119.17712 * 179.79303 * 14 13 11 16 16 C 1.38417 * 118.56990 * 0.47618 * 15 14 13 17 17 C 1.39237 * 119.32250 * 359.74392 * 16 15 14 18 18 O 1.35664 * 119.61422 * 179.97438 * 17 16 15 19 19 C 1.42897 * 117.00107 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47279 * 180.02562 * 19 18 17 21 21 F 1.39902 * 109.47172 * 300.00440 * 20 19 18 22 22 F 1.39903 * 109.46905 * 60.00058 * 20 19 18 23 23 N 1.31941 * 120.77316 * 0.02830 * 17 16 15 24 24 H 1.08994 * 109.46674 * 24.29645 * 1 2 3 25 25 H 1.08999 * 109.47115 * 144.29914 * 1 2 3 26 26 H 1.09003 * 109.47223 * 264.29799 * 1 2 3 27 27 H 0.96989 * 120.00177 * 179.97438 * 6 5 3 28 28 H 1.07999 * 120.41249 * 0.02562 * 14 13 11 29 29 H 1.08004 * 120.71707 * 180.20518 * 15 14 13 30 30 H 1.07997 * 120.33712 * 179.77400 * 16 15 14 31 31 H 1.08998 * 109.47571 * 300.00555 * 19 18 17 32 32 H 1.09003 * 109.46869 * 60.00953 * 19 18 17 33 33 H 1.08990 * 109.47424 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1845 0.0000 4 1 3.1715 1.2176 -0.3462 5 6 1.5258 2.3475 0.4403 6 7 0.4777 2.2730 1.2281 7 14 2.1796 4.0154 -0.0889 8 1 2.1291 4.1198 -1.5693 9 1 1.3460 5.0873 0.5121 10 1 3.5838 4.1650 0.3703 11 6 2.1388 -1.1673 0.0005 12 8 3.3491 -1.1706 -0.1151 13 6 1.4056 -2.4449 0.1416 14 6 2.0890 -3.6511 0.0081 15 6 1.3920 -4.8421 0.1467 16 6 0.0330 -4.7877 0.4041 17 6 -0.5897 -3.5479 0.5211 18 8 -1.9214 -3.4876 0.7729 19 6 -2.5029 -2.1868 0.8815 20 6 -4.0005 -2.3197 1.1654 21 9 -4.6132 -3.0187 0.1198 22 9 -4.1878 -3.0159 2.3644 23 7 0.1000 -2.4309 0.3890 24 1 -0.3632 0.9366 -0.4228 25 1 -0.3633 -0.8345 -0.5997 26 1 -0.3634 -0.1021 1.0226 27 1 0.0433 3.0839 1.5355 28 1 3.1493 -3.6589 -0.1970 29 1 1.8977 -5.7917 0.0514 30 1 -0.5383 -5.6976 0.5136 31 1 -2.0259 -1.6424 1.6964 32 1 -2.3567 -1.6444 -0.0526 33 1 -4.4442 -1.3276 1.2478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270500897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:38 Heat of formation + Delta-G solvation = -112.895706 kcal Electronic energy + Delta-G solvation = -22750.244469 eV Core-core repulsion = 18834.471977 eV Total energy + Delta-G solvation = -3915.772491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.98184 -47.01036 -40.46974 -38.51768 -37.26342 -34.83235 -32.58008 -31.48615 -31.10232 -29.31481 -26.44513 -25.37026 -23.85936 -23.10472 -22.21855 -20.09260 -18.26855 -17.54600 -17.37350 -16.96704 -16.71604 -16.26730 -15.77503 -15.68661 -15.06721 -14.71461 -14.20779 -14.14573 -13.85404 -13.51966 -13.37453 -13.18398 -12.95571 -12.69708 -12.35915 -11.89589 -11.68633 -11.54119 -11.37586 -11.08610 -11.06314 -10.92372 -10.53560 -10.42202 -9.63775 -9.35359 -9.04226 -8.45711 -8.25080 -7.79723 -6.57924 -3.96936 1.14245 1.58019 2.85695 3.08484 3.14922 3.18997 3.58518 3.72161 3.96954 4.09610 4.36113 4.44545 4.47423 4.76521 4.81883 5.01760 5.22898 5.31782 5.38743 5.44252 5.46787 5.67671 5.92412 6.29863 6.46093 6.59863 6.62716 6.83798 7.15805 7.33064 7.37784 7.94041 8.07583 8.34582 9.00812 9.23258 9.86406 10.44900 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.005840 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.786744 B = 4793.349352 C = 6430.485691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.402 5.402 3 C -0.307 4.307 4 H 0.106 0.894 5 C 0.036 3.964 6 N -0.852 5.852 7 Si 0.927 3.073 8 H -0.270 1.270 9 H -0.282 1.282 10 H -0.269 1.269 11 C 0.465 3.535 12 O -0.590 6.590 13 C 0.154 3.846 14 C -0.165 4.165 15 C -0.050 4.050 16 C -0.194 4.194 17 C 0.310 3.690 18 O -0.300 6.300 19 C 0.016 3.984 20 C 0.271 3.729 21 F -0.202 7.202 22 F -0.201 7.201 23 N -0.513 5.513 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.273 0.727 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.666 -8.184 -0.782 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.116 5.116 3 C -0.436 4.436 4 H 0.124 0.876 5 C -0.171 4.171 6 N -0.488 5.488 7 Si 0.752 3.248 8 H -0.196 1.196 9 H -0.207 1.207 10 H -0.194 1.194 11 C 0.254 3.746 12 O -0.476 6.476 13 C 0.017 3.983 14 C -0.187 4.187 15 C -0.075 4.075 16 C -0.215 4.215 17 C 0.130 3.870 18 O -0.208 6.208 19 C -0.061 4.061 20 C 0.217 3.783 21 F -0.183 7.183 22 F -0.182 7.182 23 N -0.241 5.241 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.878 -7.419 -0.615 11.586 hybrid contribution 0.372 0.182 -0.090 0.424 sum -8.506 -7.238 -0.705 11.191 Atomic orbital electron populations 1.21814 0.80232 0.99400 1.01222 1.43570 1.06373 1.04618 1.57041 1.19787 0.99608 0.83399 1.40778 0.87601 1.25438 0.96550 1.00458 0.94614 1.70029 1.21268 1.30251 1.27280 0.85982 0.79213 0.80221 0.79334 1.19558 1.20723 1.19393 1.17500 0.86614 0.82458 0.87993 1.90613 1.13044 1.85947 1.58043 1.21412 0.87412 0.95624 0.93823 1.21925 1.02292 0.91469 1.03006 1.21308 0.92750 0.98599 0.94836 1.21007 0.95285 0.96281 1.08965 1.19855 0.83781 0.90410 0.92981 1.86222 1.18775 1.29604 1.86159 1.23909 0.90651 0.85455 1.06042 1.22179 0.92025 0.91944 0.72154 1.93003 1.84745 1.82219 1.58349 1.93007 1.96190 1.82306 1.46722 1.67996 1.09460 1.28246 1.18365 0.92266 0.92997 0.92622 0.91651 0.83709 0.84168 0.84579 0.87976 0.88263 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.61 7.38 59.85 0.44 3.05 16 2 N -0.40 -10.41 3.00 -123.24 -0.37 -10.79 16 3 C -0.31 -8.37 9.27 -15.02 -0.14 -8.51 16 4 H 0.11 3.00 7.41 -52.49 -0.39 2.61 16 5 C 0.04 0.92 4.83 -17.45 -0.08 0.84 16 6 N -0.85 -21.60 11.21 55.50 0.62 -20.98 16 7 Si 0.93 19.61 29.60 -169.99 -5.03 14.58 16 8 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 9 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 10 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 11 C 0.47 11.84 7.59 -12.26 -0.09 11.75 16 12 O -0.59 -16.51 16.01 5.30 0.08 -16.42 16 13 C 0.15 3.24 6.56 -83.03 -0.54 2.70 16 14 C -0.17 -2.91 9.63 -39.03 -0.38 -3.29 16 15 C -0.05 -0.69 10.16 -39.35 -0.40 -1.09 16 16 C -0.19 -2.80 10.05 -39.14 -0.39 -3.19 16 17 C 0.31 5.22 7.49 -17.13 -0.13 5.09 16 18 O -0.30 -4.69 10.00 -18.69 -0.19 -4.88 16 19 C 0.02 0.21 5.53 37.16 0.21 0.42 16 20 C 0.27 2.98 5.63 37.16 0.21 3.19 16 21 F -0.20 -2.57 17.28 2.25 0.04 -2.54 16 22 F -0.20 -2.63 17.28 2.25 0.04 -2.59 16 23 N -0.51 -9.87 5.02 -9.89 -0.05 -9.92 16 24 H 0.06 1.35 6.74 -51.93 -0.35 1.00 16 25 H 0.05 1.05 5.19 -51.93 -0.27 0.79 16 26 H 0.06 1.26 7.63 -51.93 -0.40 0.86 16 27 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 28 H 0.15 2.51 7.65 -52.49 -0.40 2.11 16 29 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.10 1.41 7.97 -51.93 -0.41 1.00 16 32 H 0.10 1.28 7.38 -51.93 -0.38 0.90 16 33 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 297.36 15.07 4.48 4.48 Total: -1.00 -31.35 297.36 -4.68 -36.03 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.01 Total: 2.06 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: -1.30 Total: 10.96 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.20 Total: -41.68 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.10 Total: -21.30 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.08 Total: -5.12 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.35 -4.68 -36.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270500897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.863 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds