Wall clock time and date at job start Tue Mar 31 2020 06:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36780 * 120.00302 * 2 1 4 4 H 1.08002 * 119.99621 * 201.72442 * 3 2 1 5 5 C 1.39099 * 120.00231 * 21.43930 * 3 2 1 6 6 N 1.31331 * 119.99991 * 21.41027 * 5 3 2 7 7 Si 1.86800 * 120.00441 * 201.40908 * 5 3 2 8 8 H 1.48494 * 109.46867 * 59.99766 * 7 5 3 9 9 H 1.48496 * 109.47402 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46634 * 300.00060 * 7 5 3 11 11 C 1.34780 * 119.99624 * 179.97438 * 2 1 3 12 12 O 1.21576 * 119.99902 * 173.69680 * 11 2 1 13 13 C 1.47984 * 120.00298 * 353.70658 * 11 2 1 14 14 C 1.39276 * 119.69870 * 173.62138 * 13 11 2 15 15 C 1.38695 * 119.17712 * 179.79303 * 14 13 11 16 16 C 1.38417 * 118.56990 * 0.47618 * 15 14 13 17 17 C 1.39237 * 119.32250 * 359.74392 * 16 15 14 18 18 O 1.35664 * 119.61422 * 179.97438 * 17 16 15 19 19 C 1.42897 * 117.00107 * 180.02562 * 18 17 16 20 20 C 1.53003 * 109.47279 * 180.02562 * 19 18 17 21 21 F 1.39902 * 109.47172 * 300.00440 * 20 19 18 22 22 F 1.39903 * 109.46905 * 60.00058 * 20 19 18 23 23 N 1.31941 * 120.77316 * 0.02830 * 17 16 15 24 24 H 1.08994 * 109.46674 * 24.29645 * 1 2 3 25 25 H 1.08999 * 109.47115 * 144.29914 * 1 2 3 26 26 H 1.09003 * 109.47223 * 264.29799 * 1 2 3 27 27 H 0.96989 * 120.00177 * 179.97438 * 6 5 3 28 28 H 1.07999 * 120.41249 * 0.02562 * 14 13 11 29 29 H 1.08004 * 120.71707 * 180.20518 * 15 14 13 30 30 H 1.07997 * 120.33712 * 179.77400 * 16 15 14 31 31 H 1.08998 * 109.47571 * 300.00555 * 19 18 17 32 32 H 1.09003 * 109.46869 * 60.00953 * 19 18 17 33 33 H 1.08990 * 109.47424 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1845 0.0000 4 1 3.1715 1.2176 -0.3462 5 6 1.5258 2.3475 0.4403 6 7 0.4777 2.2730 1.2281 7 14 2.1796 4.0154 -0.0889 8 1 2.1291 4.1198 -1.5693 9 1 1.3460 5.0873 0.5121 10 1 3.5838 4.1650 0.3703 11 6 2.1388 -1.1673 0.0005 12 8 3.3491 -1.1706 -0.1151 13 6 1.4056 -2.4449 0.1416 14 6 2.0890 -3.6511 0.0081 15 6 1.3920 -4.8421 0.1467 16 6 0.0330 -4.7877 0.4041 17 6 -0.5897 -3.5479 0.5211 18 8 -1.9214 -3.4876 0.7729 19 6 -2.5029 -2.1868 0.8815 20 6 -4.0005 -2.3197 1.1654 21 9 -4.6132 -3.0187 0.1198 22 9 -4.1878 -3.0159 2.3644 23 7 0.1000 -2.4309 0.3890 24 1 -0.3632 0.9366 -0.4228 25 1 -0.3633 -0.8345 -0.5997 26 1 -0.3634 -0.1021 1.0226 27 1 0.0433 3.0839 1.5355 28 1 3.1493 -3.6589 -0.1970 29 1 1.8977 -5.7917 0.0514 30 1 -0.5383 -5.6976 0.5136 31 1 -2.0259 -1.6424 1.6964 32 1 -2.3567 -1.6444 -0.0526 33 1 -4.4442 -1.3276 1.2478 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270500897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:38 Heat of formation + Delta-G solvation = -133.815315 kcal Electronic energy + Delta-G solvation = -22751.151611 eV Core-core repulsion = 18834.471977 eV Total energy + Delta-G solvation = -3916.679633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.93010 -47.96894 -41.86943 -40.18259 -38.69536 -36.79578 -34.18037 -33.16410 -32.32050 -30.54711 -28.31553 -27.08993 -25.23368 -24.51000 -23.37088 -21.70535 -19.50361 -19.11731 -18.55820 -18.46751 -17.95458 -17.53376 -17.06467 -16.94112 -16.76656 -16.26390 -15.96461 -15.85418 -14.89434 -14.76593 -14.59421 -14.41227 -14.33928 -14.21218 -13.72001 -13.43070 -13.24583 -13.21292 -12.97645 -12.64214 -12.52251 -12.19563 -12.12900 -12.02903 -11.19922 -10.90316 -10.87994 -10.18863 -9.82128 -9.54481 -8.48524 -6.01730 -0.26077 0.30326 1.38381 1.41646 1.52127 1.73798 1.94728 2.23120 2.75352 2.78904 2.82193 3.10115 3.25138 3.26955 3.49252 3.89122 3.97307 4.08564 4.10338 4.30031 4.39604 4.45989 4.56610 4.82962 5.01000 5.03999 5.17731 5.31765 5.38787 5.38990 5.93224 6.08965 6.35925 6.69709 7.05193 7.31504 7.92069 8.54349 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.005840 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.786744 B = 4793.349352 C = 6430.485691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.423 5.423 3 C -0.357 4.357 4 H 0.079 0.921 5 C 0.008 3.992 6 N -0.871 5.871 7 Si 0.992 3.008 8 H -0.266 1.266 9 H -0.265 1.265 10 H -0.273 1.273 11 C 0.456 3.544 12 O -0.629 6.629 13 C 0.119 3.881 14 C -0.164 4.164 15 C -0.028 4.028 16 C -0.170 4.170 17 C 0.295 3.705 18 O -0.303 6.303 19 C 0.010 3.990 20 C 0.275 3.725 21 F -0.211 7.211 22 F -0.212 7.212 23 N -0.527 5.527 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.281 0.719 28 H 0.142 0.858 29 H 0.193 0.807 30 H 0.175 0.825 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.125 -9.796 -0.783 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.137 5.137 3 C -0.485 4.485 4 H 0.097 0.903 5 C -0.197 4.197 6 N -0.507 5.507 7 Si 0.814 3.186 8 H -0.191 1.191 9 H -0.189 1.189 10 H -0.198 1.198 11 C 0.246 3.754 12 O -0.519 6.519 13 C -0.016 4.016 14 C -0.186 4.186 15 C -0.053 4.053 16 C -0.191 4.191 17 C 0.114 3.886 18 O -0.211 6.211 19 C -0.067 4.067 20 C 0.222 3.778 21 F -0.192 7.192 22 F -0.194 7.194 23 N -0.255 5.255 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.160 0.840 29 H 0.211 0.789 30 H 0.193 0.807 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.376 -9.036 -0.607 13.772 hybrid contribution 0.764 0.423 -0.054 0.875 sum -9.611 -8.614 -0.662 12.923 Atomic orbital electron populations 1.21656 0.78574 0.99338 1.00814 1.43780 1.07477 1.04551 1.57842 1.19717 0.99495 0.85227 1.44103 0.90342 1.26194 0.96679 1.03100 0.93757 1.70066 1.21855 1.31507 1.27225 0.85031 0.78427 0.76043 0.79073 1.19052 1.18922 1.19841 1.18275 0.86656 0.84015 0.86441 1.90544 1.14919 1.87120 1.59278 1.20857 0.88446 0.94492 0.97849 1.22076 1.02392 0.91772 1.02402 1.21824 0.92366 0.99010 0.92084 1.21580 0.95629 0.96607 1.05248 1.20248 0.84251 0.90744 0.93315 1.86238 1.18060 1.30767 1.86037 1.24091 0.92149 0.84653 1.05782 1.22534 0.90536 0.93529 0.71199 1.92984 1.84699 1.82693 1.58842 1.92983 1.96120 1.82828 1.47464 1.67703 1.08859 1.30180 1.18710 0.93462 0.91256 0.93462 0.90899 0.83984 0.78944 0.80747 0.88876 0.88198 0.80402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.42 7.38 127.77 0.94 7.36 16 2 N -0.42 -22.97 3.00 -662.07 -1.99 -24.96 16 3 C -0.36 -20.54 9.27 84.13 0.78 -19.76 16 4 H 0.08 4.79 7.41 -2.91 -0.02 4.77 16 5 C 0.01 0.43 4.83 84.97 0.41 0.84 16 6 N -0.87 -44.91 11.21 21.69 0.24 -44.67 16 7 Si 0.99 40.91 29.60 68.60 2.03 42.94 16 8 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 9 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 11 C 0.46 24.33 7.59 86.83 0.66 24.99 16 12 O -0.63 -37.21 16.01 -3.95 -0.06 -37.27 16 13 C 0.12 5.05 6.56 41.82 0.27 5.33 16 14 C -0.16 -5.57 9.63 22.63 0.22 -5.35 16 15 C -0.03 -0.66 10.16 22.42 0.23 -0.43 16 16 C -0.17 -4.15 10.05 22.55 0.23 -3.93 16 17 C 0.29 9.31 7.49 84.92 0.64 9.94 16 18 O -0.30 -8.87 10.00 -89.80 -0.90 -9.77 16 19 C 0.01 0.25 5.53 71.98 0.40 0.64 16 20 C 0.28 5.46 5.63 71.98 0.41 5.86 16 21 F -0.21 -4.93 17.28 44.97 0.78 -4.16 16 22 F -0.21 -5.16 17.28 44.97 0.78 -4.38 16 23 N -0.53 -20.06 5.02 -298.22 -1.50 -21.56 16 24 H 0.05 2.23 6.74 -2.39 -0.02 2.21 16 25 H 0.07 2.89 5.19 -2.39 -0.01 2.88 16 26 H 0.05 2.21 7.63 -2.39 -0.02 2.19 16 27 H 0.28 13.29 8.31 -92.72 -0.77 12.52 16 28 H 0.14 4.85 7.65 -2.91 -0.02 4.83 16 29 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.18 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.09 2.54 7.97 -2.39 -0.02 2.52 16 32 H 0.10 2.50 7.38 -2.39 -0.02 2.49 16 33 H 0.18 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -72.27 297.36 5.71 -66.55 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.16 Total: 11.79 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: 5.18 Total: 25.49 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.24 Total: -91.19 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -0.96 Total: -47.05 kcal Atomic # 9 Polarization: -10.09 SS G_CDS: 1.55 Total: -8.54 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -72.27 5.71 -66.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270500897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.265 kcal (2) G-P(sol) polarization free energy of solvation -72.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds