Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36905 * 119.99874 * 2 1 4 4 H 1.07998 * 119.99858 * 201.19643 * 3 2 1 5 5 C 1.39024 * 120.00258 * 21.19406 * 3 2 1 6 6 N 1.31376 * 119.99604 * 17.22766 * 5 3 2 7 7 Si 1.86794 * 119.99774 * 197.23365 * 5 3 2 8 8 H 1.48505 * 109.47390 * 94.98760 * 7 5 3 9 9 H 1.48505 * 109.46998 * 214.98031 * 7 5 3 10 10 H 1.48493 * 109.47627 * 334.97966 * 7 5 3 11 11 C 1.34775 * 120.00127 * 179.97438 * 2 1 3 12 12 O 1.21617 * 120.00167 * 184.01310 * 11 2 1 13 13 C 1.47516 * 119.99965 * 4.01526 * 11 2 1 14 14 C 1.40312 * 120.49719 * 320.88822 * 13 11 2 15 15 C 1.36959 * 118.46542 * 180.02562 * 14 13 11 16 16 C 1.39161 * 119.40008 * 359.97438 * 15 14 13 17 17 O 1.35501 * 119.51029 * 180.02562 * 16 15 14 18 18 C 1.42901 * 116.99954 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47064 * 180.02562 * 18 17 16 20 20 F 1.39904 * 109.47142 * 299.99888 * 19 18 17 21 21 F 1.39891 * 109.47311 * 60.00275 * 19 18 17 22 22 N 1.32422 * 120.97503 * 0.02562 * 16 15 14 23 23 C 1.31700 * 121.66957 * 0.02562 * 22 16 15 24 24 H 1.08992 * 109.47575 * 264.85160 * 1 2 3 25 25 H 1.09004 * 109.47059 * 24.85720 * 1 2 3 26 26 H 1.09000 * 109.46981 * 144.85162 * 1 2 3 27 27 H 0.97003 * 119.99429 * 179.97438 * 6 5 3 28 28 H 1.08005 * 120.77132 * 0.04262 * 14 13 11 29 29 H 1.08000 * 120.30292 * 180.02562 * 15 14 13 30 30 H 1.08999 * 109.47172 * 300.00748 * 18 17 16 31 31 H 1.08998 * 109.46974 * 60.00209 * 18 17 16 32 32 H 1.09000 * 109.46825 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.75826 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1747 1.2173 -0.3382 5 6 1.5249 2.3489 0.4353 6 7 0.4260 2.2759 1.1515 7 14 2.2481 4.0157 0.0015 8 1 1.5866 4.5395 -1.2205 9 1 2.0273 4.9591 1.1268 10 1 3.7053 3.8737 -0.2466 11 6 2.1389 -1.1672 0.0005 12 8 3.3528 -1.1684 0.0742 13 6 1.4040 -2.4432 -0.0884 14 6 0.1917 -2.6159 0.5965 15 6 -0.4554 -3.8178 0.4852 16 6 0.1026 -4.8243 -0.2973 17 8 -0.5360 -6.0141 -0.4093 18 6 0.0843 -7.0088 -1.2265 19 6 -0.7767 -8.2736 -1.2323 20 9 -0.9044 -8.7568 0.0745 21 9 -2.0434 -7.9731 -1.7442 22 7 1.2484 -4.6363 -0.9339 23 6 1.9049 -3.4974 -0.8543 24 1 -0.3634 -0.0922 1.0234 25 1 -0.3633 0.9325 -0.4320 26 1 -0.3633 -0.8403 -0.5916 27 1 -0.0095 3.0875 1.4555 28 1 -0.2219 -1.8194 1.1973 29 1 -1.3908 -3.9828 0.9994 30 1 0.1835 -6.6325 -2.2447 31 1 1.0714 -7.2427 -0.8279 32 1 -0.3033 -9.0325 -1.8552 33 1 2.8373 -3.3778 -1.3862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270605339.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = -119.865319 kcal Electronic energy + Delta-G solvation = -21927.663206 eV Core-core repulsion = 18011.588490 eV Total energy + Delta-G solvation = -3916.074716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.18380 -47.21460 -40.60402 -38.80235 -37.35759 -34.84592 -32.70659 -31.68582 -31.12701 -29.52520 -26.54859 -25.13264 -24.14196 -23.23885 -22.37826 -19.71393 -18.90880 -17.75077 -17.45922 -17.18798 -17.02203 -16.34491 -15.91690 -15.77364 -15.09421 -14.47500 -14.23283 -14.09172 -13.97498 -13.71252 -13.57293 -13.47142 -13.12929 -12.88291 -12.56305 -12.14412 -11.70394 -11.50427 -11.43928 -11.29302 -11.24795 -10.89746 -10.45229 -10.42141 -9.63139 -9.60769 -9.12450 -8.62284 -8.24160 -7.84113 -6.49967 -3.97393 1.17813 1.44425 2.66010 3.08996 3.19267 3.24754 3.49580 3.62141 3.85013 4.01881 4.17939 4.23556 4.34224 4.59201 4.72218 4.99091 5.08472 5.13236 5.22647 5.26180 5.33733 5.58683 5.91254 6.13947 6.20135 6.45655 6.50190 6.66198 7.02194 7.17322 7.43656 7.88704 8.01620 8.34157 9.03997 9.25528 9.83814 10.54997 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.045731 B = 0.003218 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.126202 B = 8697.846920 C = 9009.757613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.428 5.428 3 C -0.307 4.307 4 H 0.104 0.896 5 C 0.032 3.968 6 N -0.871 5.871 7 Si 0.928 3.072 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.267 1.267 11 C 0.479 3.521 12 O -0.586 6.586 13 C -0.174 4.174 14 C -0.026 4.026 15 C -0.188 4.188 16 C 0.312 3.688 17 O -0.297 6.297 18 C 0.019 3.981 19 C 0.270 3.730 20 F -0.200 7.200 21 F -0.200 7.200 22 N -0.546 5.546 23 C 0.174 3.826 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.033 0.967 27 H 0.271 0.729 28 H 0.156 0.844 29 H 0.142 0.858 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 -15.407 -4.676 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.144 5.144 3 C -0.434 4.434 4 H 0.122 0.878 5 C -0.172 4.172 6 N -0.509 5.509 7 Si 0.755 3.245 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.191 1.191 11 C 0.268 3.732 12 O -0.472 6.472 13 C -0.180 4.180 14 C -0.052 4.052 15 C -0.208 4.208 16 C 0.133 3.867 17 O -0.205 6.205 18 C -0.058 4.058 19 C 0.217 3.783 20 F -0.181 7.181 21 F -0.181 7.181 22 N -0.269 5.269 23 C 0.018 3.982 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.173 0.827 29 H 0.160 0.840 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.148 0.852 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.747 -16.001 -4.915 17.399 hybrid contribution -0.203 1.446 0.364 1.504 sum -4.949 -14.556 -4.551 16.034 Atomic orbital electron populations 1.21824 0.81333 1.00739 1.00258 1.43520 1.05555 1.04754 1.60591 1.19757 0.99252 0.83197 1.41231 0.87841 1.25381 0.96607 1.00312 0.94941 1.70001 1.19507 1.29725 1.31702 0.85869 0.79728 0.80823 0.78124 1.20242 1.20815 1.19106 1.17592 0.87282 0.82614 0.85758 1.90631 1.13352 1.86589 1.56646 1.21180 0.96914 0.98117 1.01769 1.21828 0.92327 0.96236 0.94785 1.20700 1.03615 0.92541 1.03970 1.19858 0.89083 0.85430 0.92312 1.86218 1.47407 1.20757 1.66109 1.23762 0.97154 0.86765 0.98101 1.22143 0.81362 0.95209 0.79601 1.93022 1.96291 1.89248 1.39543 1.93018 1.43833 1.94512 1.86728 1.67302 1.08499 1.26030 1.25062 1.22495 0.97157 0.85471 0.93117 0.92613 0.90321 0.94854 0.91894 0.82697 0.84025 0.88497 0.88490 0.85223 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.17 7.20 59.85 0.43 2.61 16 2 N -0.43 -10.69 3.01 -123.39 -0.37 -11.06 16 3 C -0.31 -8.29 9.26 -15.00 -0.14 -8.43 16 4 H 0.10 2.92 7.45 -52.49 -0.39 2.53 16 5 C 0.03 0.82 4.95 -17.45 -0.09 0.73 16 6 N -0.87 -22.22 10.91 55.50 0.61 -21.62 16 7 Si 0.93 19.93 29.59 -169.99 -5.03 14.90 16 8 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 11 C 0.48 11.65 7.31 -12.48 -0.09 11.56 16 12 O -0.59 -16.20 16.63 5.26 0.09 -16.12 16 13 C -0.17 -3.40 5.22 -104.83 -0.55 -3.95 16 14 C -0.03 -0.44 7.66 -39.27 -0.30 -0.74 16 15 C -0.19 -2.81 9.97 -39.70 -0.40 -3.21 16 16 C 0.31 4.82 7.49 -16.95 -0.13 4.69 16 17 O -0.30 -4.12 9.99 -18.20 -0.18 -4.31 16 18 C 0.02 0.19 5.52 37.16 0.21 0.40 16 19 C 0.27 2.23 5.63 37.16 0.21 2.44 16 20 F -0.20 -2.17 17.28 2.25 0.04 -2.13 16 21 F -0.20 -2.16 17.28 2.25 0.04 -2.12 16 22 N -0.55 -8.75 9.19 -12.93 -0.12 -8.86 16 23 C 0.17 3.06 10.81 -17.10 -0.18 2.87 16 24 H 0.06 1.17 6.60 -51.93 -0.34 0.83 16 25 H 0.08 1.78 6.63 -51.93 -0.34 1.43 16 26 H 0.03 0.61 5.93 -51.93 -0.31 0.30 16 27 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 28 H 0.16 2.54 5.39 -52.48 -0.28 2.26 16 29 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.17 2.77 8.05 -52.49 -0.42 2.35 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -31.64 296.98 -4.40 -36.04 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -2.91 Total: 1.83 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -1.03 Total: 8.97 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.12 Total: -41.54 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.09 Total: -20.42 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.08 Total: -4.25 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.64 -4.40 -36.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270605339.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.829 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds