Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36905 * 119.99874 * 2 1 4 4 H 1.07998 * 119.99858 * 201.19643 * 3 2 1 5 5 C 1.39024 * 120.00258 * 21.19406 * 3 2 1 6 6 N 1.31376 * 119.99604 * 17.22766 * 5 3 2 7 7 Si 1.86794 * 119.99774 * 197.23365 * 5 3 2 8 8 H 1.48505 * 109.47390 * 94.98760 * 7 5 3 9 9 H 1.48505 * 109.46998 * 214.98031 * 7 5 3 10 10 H 1.48493 * 109.47627 * 334.97966 * 7 5 3 11 11 C 1.34775 * 120.00127 * 179.97438 * 2 1 3 12 12 O 1.21617 * 120.00167 * 184.01310 * 11 2 1 13 13 C 1.47516 * 119.99965 * 4.01526 * 11 2 1 14 14 C 1.40312 * 120.49719 * 320.88822 * 13 11 2 15 15 C 1.36959 * 118.46542 * 180.02562 * 14 13 11 16 16 C 1.39161 * 119.40008 * 359.97438 * 15 14 13 17 17 O 1.35501 * 119.51029 * 180.02562 * 16 15 14 18 18 C 1.42901 * 116.99954 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.47064 * 180.02562 * 18 17 16 20 20 F 1.39904 * 109.47142 * 299.99888 * 19 18 17 21 21 F 1.39891 * 109.47311 * 60.00275 * 19 18 17 22 22 N 1.32422 * 120.97503 * 0.02562 * 16 15 14 23 23 C 1.31700 * 121.66957 * 0.02562 * 22 16 15 24 24 H 1.08992 * 109.47575 * 264.85160 * 1 2 3 25 25 H 1.09004 * 109.47059 * 24.85720 * 1 2 3 26 26 H 1.09000 * 109.46981 * 144.85162 * 1 2 3 27 27 H 0.97003 * 119.99429 * 179.97438 * 6 5 3 28 28 H 1.08005 * 120.77132 * 0.04262 * 14 13 11 29 29 H 1.08000 * 120.30292 * 180.02562 * 15 14 13 30 30 H 1.08999 * 109.47172 * 300.00748 * 18 17 16 31 31 H 1.08998 * 109.46974 * 60.00209 * 18 17 16 32 32 H 1.09000 * 109.46825 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.75826 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1747 1.2173 -0.3382 5 6 1.5249 2.3489 0.4353 6 7 0.4260 2.2759 1.1515 7 14 2.2481 4.0157 0.0015 8 1 1.5866 4.5395 -1.2205 9 1 2.0273 4.9591 1.1268 10 1 3.7053 3.8737 -0.2466 11 6 2.1389 -1.1672 0.0005 12 8 3.3528 -1.1684 0.0742 13 6 1.4040 -2.4432 -0.0884 14 6 0.1917 -2.6159 0.5965 15 6 -0.4554 -3.8178 0.4852 16 6 0.1026 -4.8243 -0.2973 17 8 -0.5360 -6.0141 -0.4093 18 6 0.0843 -7.0088 -1.2265 19 6 -0.7767 -8.2736 -1.2323 20 9 -0.9044 -8.7568 0.0745 21 9 -2.0434 -7.9731 -1.7442 22 7 1.2484 -4.6363 -0.9339 23 6 1.9049 -3.4974 -0.8543 24 1 -0.3634 -0.0922 1.0234 25 1 -0.3633 0.9325 -0.4320 26 1 -0.3633 -0.8403 -0.5916 27 1 -0.0095 3.0875 1.4555 28 1 -0.2219 -1.8194 1.1973 29 1 -1.3908 -3.9828 0.9994 30 1 0.1835 -6.6325 -2.2447 31 1 1.0714 -7.2427 -0.8279 32 1 -0.3033 -9.0325 -1.8552 33 1 2.8373 -3.3778 -1.3862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270605339.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = -141.959275 kcal Electronic energy + Delta-G solvation = -21928.621272 eV Core-core repulsion = 18011.588490 eV Total energy + Delta-G solvation = -3917.032782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.91282 -47.96220 -41.92590 -40.38234 -38.73838 -36.78339 -34.26671 -33.28557 -32.33415 -30.63860 -28.35806 -26.88265 -25.20839 -24.74607 -23.38500 -21.41799 -19.95402 -19.09458 -18.51252 -18.46126 -17.99236 -17.90743 -17.00431 -16.93041 -16.87288 -16.05970 -15.89910 -15.43631 -15.10392 -14.89772 -14.78538 -14.41303 -14.34362 -14.27860 -13.82619 -13.42595 -13.32634 -13.23530 -13.16435 -12.58954 -12.50285 -12.23275 -12.12886 -12.01259 -11.07543 -10.97266 -10.94105 -10.45350 -9.79950 -9.58680 -8.43196 -6.00897 -0.19629 0.13751 1.38065 1.42906 1.55190 1.67282 1.97302 2.25052 2.67767 2.80063 2.94574 3.07835 3.15534 3.29483 3.51648 3.77458 3.85475 3.92128 4.05533 4.18400 4.36660 4.41849 4.54512 4.62903 4.80686 4.92480 5.11309 5.18465 5.30417 5.41624 5.95945 6.04356 6.40300 6.61736 7.08553 7.35277 7.93194 8.60739 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.045731 B = 0.003218 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.126202 B = 8697.846920 C = 9009.757613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.443 5.443 3 C -0.349 4.349 4 H 0.076 0.924 5 C 0.003 3.997 6 N -0.885 5.885 7 Si 0.991 3.009 8 H -0.264 1.264 9 H -0.273 1.273 10 H -0.275 1.275 11 C 0.475 3.525 12 O -0.632 6.632 13 C -0.201 4.201 14 C -0.020 4.020 15 C -0.180 4.180 16 C 0.321 3.679 17 O -0.304 6.304 18 C 0.007 3.993 19 C 0.270 3.730 20 F -0.216 7.216 21 F -0.215 7.215 22 N -0.541 5.541 23 C 0.180 3.820 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.278 0.722 28 H 0.158 0.842 29 H 0.173 0.827 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.187 0.813 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 -16.702 -5.100 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.159 5.159 3 C -0.477 4.477 4 H 0.094 0.906 5 C -0.200 4.200 6 N -0.522 5.522 7 Si 0.815 3.185 8 H -0.188 1.188 9 H -0.198 1.198 10 H -0.199 1.199 11 C 0.265 3.735 12 O -0.522 6.522 13 C -0.207 4.207 14 C -0.045 4.045 15 C -0.200 4.200 16 C 0.141 3.859 17 O -0.211 6.211 18 C -0.069 4.069 19 C 0.217 3.783 20 F -0.197 7.197 21 F -0.197 7.197 22 N -0.265 5.265 23 C 0.023 3.977 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.176 0.824 29 H 0.190 0.810 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.203 0.797 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.167 -17.322 -5.338 19.146 hybrid contribution 0.169 1.650 0.496 1.731 sum -5.998 -15.672 -4.842 17.465 Atomic orbital electron populations 1.21785 0.79375 1.01070 1.00661 1.43733 1.06864 1.04514 1.60767 1.19698 0.99066 0.85070 1.43875 0.90574 1.26106 0.96898 1.02919 0.94091 1.70044 1.19921 1.30917 1.31352 0.84948 0.78514 0.76637 0.78448 1.18845 1.19812 1.19930 1.18286 0.87054 0.83982 0.84202 1.90575 1.15548 1.87640 1.58395 1.20815 0.98468 0.96436 1.04953 1.21802 0.91270 0.97230 0.94198 1.20950 1.04264 0.91382 1.03378 1.20125 0.88492 0.86139 0.91109 1.86232 1.47636 1.20603 1.66649 1.24182 0.98041 0.86487 0.98153 1.22694 0.80525 0.95525 0.79515 1.92991 1.96323 1.89346 1.41070 1.92988 1.45120 1.94705 1.86852 1.67363 1.08850 1.24952 1.25306 1.22476 0.97203 0.85358 0.92638 0.92530 0.91890 0.91971 0.91221 0.82416 0.81001 0.87374 0.87520 0.79687 0.81475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.86 7.20 127.77 0.92 5.78 16 2 N -0.44 -22.76 3.01 -662.56 -2.00 -24.75 16 3 C -0.35 -19.60 9.26 84.09 0.78 -18.82 16 4 H 0.08 4.57 7.45 -2.91 -0.02 4.55 16 5 C 0.00 0.17 4.95 84.95 0.42 0.59 16 6 N -0.89 -45.13 10.91 21.68 0.24 -44.89 16 7 Si 0.99 41.08 29.59 68.60 2.03 43.11 16 8 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 9 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 C 0.47 23.84 7.31 86.69 0.63 24.48 16 12 O -0.63 -36.64 16.63 -4.08 -0.07 -36.71 16 13 C -0.20 -7.84 5.22 -20.00 -0.10 -7.95 16 14 C -0.02 -0.63 7.66 22.47 0.17 -0.46 16 15 C -0.18 -4.89 9.97 22.19 0.22 -4.67 16 16 C 0.32 9.07 7.49 84.83 0.64 9.71 16 17 O -0.30 -7.55 9.99 -88.02 -0.88 -8.43 16 18 C 0.01 0.12 5.52 71.98 0.40 0.52 16 19 C 0.27 3.57 5.63 71.98 0.41 3.97 16 20 F -0.22 -4.14 17.28 44.97 0.78 -3.36 16 21 F -0.22 -4.09 17.28 44.97 0.78 -3.31 16 22 N -0.54 -16.32 9.19 -307.71 -2.83 -19.15 16 23 C 0.18 6.22 10.81 85.04 0.92 7.14 16 24 H 0.06 2.37 6.60 -2.39 -0.02 2.36 16 25 H 0.06 2.86 6.63 -2.39 -0.02 2.84 16 26 H 0.06 2.25 5.93 -2.39 -0.01 2.23 16 27 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 28 H 0.16 4.99 5.39 -2.91 -0.02 4.97 16 29 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 30 H 0.11 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.11 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.19 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.17 5.65 8.05 -2.91 -0.02 5.62 16 Total: -1.00 -70.25 296.98 4.61 -65.64 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.16 Total: 11.56 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.40 Total: 20.29 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -4.59 Total: -88.79 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.95 Total: -45.14 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 1.55 Total: -6.67 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -70.25 4.61 -65.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270605339.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.321 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds