Wall clock time and date at job start Tue Mar 31 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30206 * 126.79261 * 2 1 4 4 O 1.20920 * 111.64610 * 180.29156 * 3 2 1 5 5 C 1.34057 * 111.55483 * 359.69853 * 4 3 2 6 6 Cl 1.73602 * 126.80264 * 180.02562 * 5 4 3 7 7 C 1.35682 * 106.40626 * 0.02562 * 5 4 3 8 8 C 1.50697 * 128.01459 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47466 * 90.02294 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46983 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99996 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00227 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46873 * 60.00019 * 19 17 15 21 21 H 1.48503 * 109.47134 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46938 * 300.00027 * 19 17 15 23 23 H 1.09007 * 109.46930 * 270.20164 * 1 2 3 24 24 H 1.09001 * 109.46764 * 30.19523 * 1 2 3 25 25 H 1.08995 * 109.47444 * 150.20042 * 1 2 3 26 26 H 1.09002 * 109.47120 * 330.02047 * 8 7 5 27 27 H 1.08998 * 109.46862 * 210.02849 * 8 7 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 30 30 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 31 31 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 32 32 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 33 33 H 1.09001 * 109.47289 * 299.99909 * 14 13 12 34 34 H 1.09002 * 109.47153 * 59.99993 * 14 13 12 35 35 H 0.96993 * 120.00405 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0427 0.0000 4 8 3.4540 0.7268 -0.0057 5 6 3.6037 -0.6054 -0.0038 6 17 5.1011 -1.4838 -0.0096 7 6 2.3530 -1.1315 0.0035 8 6 1.9580 -2.5858 0.0089 9 6 1.8306 -3.0744 1.4531 10 6 1.4349 -4.5285 1.4584 11 8 1.2714 -5.1163 0.4102 12 7 1.2639 -5.1761 2.6281 13 6 0.8797 -6.5898 2.6332 14 6 0.7523 -7.0784 4.0774 15 6 0.3578 -8.5328 4.0828 16 1 0.2121 -9.0562 3.1494 17 6 0.1818 -9.1950 5.2793 18 7 0.3588 -8.5575 6.4159 19 14 -0.3079 -10.9977 5.2859 20 1 0.7296 -11.7950 4.5837 21 1 -0.4315 -11.4719 6.6877 22 1 -1.6105 -11.1592 4.5915 23 1 -0.3633 0.0036 1.0277 24 1 -0.3633 0.8883 -0.5169 25 1 -0.3634 -0.8917 -0.5107 26 1 2.7193 -3.1710 -0.5069 27 1 1.0016 -2.7043 -0.5005 28 1 1.0694 -2.4892 1.9689 29 1 2.7871 -2.9559 1.9624 30 1 1.3950 -4.7061 3.4663 31 1 -0.0768 -6.7083 2.1242 32 1 1.6409 -7.1750 2.1171 33 1 1.7086 -6.9599 4.5868 34 1 -0.0090 -6.4931 4.5931 35 1 0.2346 -9.0232 7.2576 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273135542.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:21 Heat of formation + Delta-G solvation = -23.242702 kcal Electronic energy + Delta-G solvation = -19365.581182 eV Core-core repulsion = 16005.493017 eV Total energy + Delta-G solvation = -3360.088165 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.15597 -40.67562 -38.29150 -37.03250 -36.45937 -34.78747 -34.19550 -32.10653 -31.11360 -29.70315 -27.32618 -25.74169 -23.02042 -22.58228 -22.32399 -21.22925 -19.00572 -18.80060 -18.54035 -17.87458 -16.94174 -16.63918 -16.42737 -16.27817 -15.45183 -14.95602 -14.57353 -14.31456 -14.27145 -13.93895 -13.83272 -13.64968 -13.54659 -13.24195 -13.19002 -12.90738 -12.84707 -12.53065 -12.25315 -12.16727 -11.81836 -11.64642 -11.46074 -11.04101 -10.80094 -10.58911 -10.27594 -9.95884 -8.23206 -6.33572 0.00708 0.09121 0.97102 1.42733 1.44586 1.52597 1.71965 2.28509 2.44844 2.57254 3.00384 3.11642 3.47670 3.73619 3.75428 4.03203 4.24857 4.27430 4.50521 4.53269 4.61782 4.67423 4.69659 4.77799 4.89241 5.00403 5.04395 5.24250 5.34210 5.52684 5.60892 5.80831 6.17969 6.68498 6.80100 6.96273 7.34075 7.35875 8.88312 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.002710 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.032404 B =10328.860891 C =10705.812211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.038 3.962 3 N -0.371 5.371 4 O 0.097 5.903 5 C -0.001 4.001 6 Cl 0.060 6.940 7 C -0.164 4.164 8 C -0.024 4.024 9 C -0.125 4.125 10 C 0.508 3.492 11 O -0.588 6.588 12 N -0.720 5.720 13 C 0.140 3.860 14 C 0.022 3.978 15 C -0.548 4.548 16 H 0.059 0.941 17 C 0.008 3.992 18 N -0.927 5.927 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.411 0.589 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.008 0.992 34 H 0.009 0.991 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.888 18.670 -11.517 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 N -0.080 5.080 4 O 0.033 5.967 5 C -0.091 4.091 6 Cl 0.088 6.912 7 C -0.169 4.169 8 C -0.062 4.062 9 C -0.165 4.165 10 C 0.296 3.704 11 O -0.469 6.469 12 N -0.371 5.371 13 C 0.016 3.984 14 C -0.015 4.015 15 C -0.587 4.587 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.193 1.193 23 H 0.118 0.882 24 H 0.105 0.895 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.247 0.753 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.703 19.458 -12.058 23.369 hybrid contribution 0.193 -1.597 0.688 1.750 sum 4.895 17.861 -11.369 21.731 Atomic orbital electron populations 1.20432 0.83193 1.05183 1.05112 1.23836 1.00412 0.87298 1.00546 1.73955 0.88828 1.23825 1.21343 1.84890 1.22180 1.21135 1.68508 1.24794 0.91709 0.84766 1.07871 1.98477 1.27619 1.68490 1.96589 1.20888 0.89755 0.98243 1.07977 1.19622 1.04078 0.86241 0.96246 1.21618 1.05518 0.90438 0.98906 1.21206 0.76098 0.90162 0.82958 1.90670 1.53237 1.70236 1.32761 1.46186 1.69459 1.12142 1.09270 1.21190 0.98337 0.80310 0.98540 1.19131 0.96251 0.95401 0.90749 1.21469 1.47501 0.96812 0.92873 0.92313 1.25857 0.95083 1.03052 0.95130 1.70045 1.50086 1.38564 0.97926 0.85530 0.79161 0.79330 0.77236 1.19386 1.20671 1.19296 0.88247 0.89535 0.88303 0.89973 0.88716 0.86198 0.87140 0.75324 0.93506 0.93688 0.97402 0.97273 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.39 71.24 0.74 -0.22 16 2 C 0.04 0.67 7.32 43.55 0.32 0.99 16 3 N -0.37 -7.98 12.07 -49.44 -0.60 -8.58 16 4 O 0.10 2.04 11.20 71.48 0.80 2.84 16 5 C 0.00 -0.03 8.12 67.23 0.55 0.52 16 6 Cl 0.06 0.97 29.23 -2.72 -0.08 0.89 16 7 C -0.16 -2.94 5.58 -19.71 -0.11 -3.05 16 8 C -0.02 -0.44 4.90 29.85 0.15 -0.29 16 9 C -0.13 -2.31 5.68 29.85 0.17 -2.14 16 10 C 0.51 14.73 7.83 87.66 0.69 15.41 16 11 O -0.59 -21.74 15.98 -3.03 -0.05 -21.78 16 12 N -0.72 -22.74 5.56 -463.06 -2.57 -25.31 16 13 C 0.14 5.76 5.61 86.38 0.48 6.25 16 14 C 0.02 1.09 5.09 29.85 0.15 1.24 16 15 C -0.55 -30.13 9.11 25.60 0.23 -29.89 16 16 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -53.69 13.29 21.45 0.28 -53.41 16 19 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.10 0.96 7.65 -2.39 -0.02 0.94 16 26 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 27 H 0.09 1.73 7.61 -2.39 -0.02 1.71 16 28 H 0.12 1.67 8.14 -2.39 -0.02 1.66 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.41 10.91 8.47 -92.71 -0.79 10.13 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -66.73 326.29 3.97 -62.76 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.33 Total: 7.87 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 3.83 Total: -10.30 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -2.88 Total: -87.30 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.75 Total: -18.94 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 17 Polarization: 0.97 SS G_CDS: -0.08 Total: 0.89 kcal Total: -66.73 3.97 -62.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273135542.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.516 kcal (2) G-P(sol) polarization free energy of solvation -66.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds