Wall clock time and date at job start Tue Mar 31 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 H 1.08990 * 109.47092 * 306.98454 * 3 2 1 5 5 C 1.50700 * 109.47081 * 186.98388 * 3 2 1 6 6 H 1.08000 * 120.00083 * 245.40272 * 5 3 2 7 7 C 1.37881 * 119.99939 * 65.12076 * 5 3 2 8 8 N 1.31513 * 119.99728 * 7.11834 * 7 5 3 9 9 Si 1.86799 * 119.99961 * 187.11996 * 7 5 3 10 10 H 1.48500 * 109.47151 * 94.86184 * 9 7 5 11 11 H 1.48503 * 109.46977 * 214.85818 * 9 7 5 12 12 H 1.48498 * 109.47031 * 334.85573 * 9 7 5 13 13 N 1.46899 * 109.46968 * 66.98648 * 3 2 1 14 14 C 1.40018 * 110.99820 * 274.99738 * 13 3 2 15 15 C 1.38991 * 120.08554 * 299.72745 * 14 13 3 16 16 F 1.35100 * 120.04613 * 359.97438 * 15 14 13 17 17 C 1.38336 * 119.91419 * 179.70293 * 15 14 13 18 18 C 1.38279 * 120.08160 * 0.57433 * 17 15 14 19 19 N 1.48022 * 119.90915 * 179.74824 * 18 17 15 20 20 O 1.21808 * 119.99425 * 179.97438 * 19 18 17 21 21 O 1.21797 * 120.00647 * 359.97438 * 19 18 17 22 22 C 1.38274 * 120.17270 * 359.71966 * 18 17 15 23 23 C 1.38334 * 120.08535 * 359.97438 * 22 18 17 24 24 F 1.35102 * 120.04062 * 180.02562 * 23 22 18 25 25 H 1.08996 * 109.46809 * 300.00327 * 1 2 3 26 26 H 1.08997 * 109.46596 * 59.99966 * 1 2 3 27 27 H 1.09001 * 109.47214 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47197 * 239.99536 * 2 1 3 29 29 H 1.09004 * 109.46727 * 119.99698 * 2 1 3 30 30 H 0.97003 * 119.99404 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00528 * 38.95627 * 13 3 2 32 32 H 1.07995 * 119.95846 * 180.32211 * 17 15 14 33 33 H 1.08002 * 119.95518 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5783 1.9911 -0.8208 5 6 3.5371 1.4460 -0.1728 6 1 4.1720 1.8018 0.6252 7 6 4.0966 0.9896 -1.3474 8 7 3.3252 0.6832 -2.3675 9 14 5.9501 0.8063 -1.4897 10 1 6.3349 -0.5928 -1.1739 11 1 6.3753 1.1362 -2.8737 12 1 6.6136 1.7299 -0.5346 13 7 1.6928 2.0846 1.2748 14 6 0.3943 2.6072 1.2360 15 6 0.0628 3.5809 0.3013 16 9 0.9933 4.0255 -0.5715 17 6 -1.2228 4.0903 0.2621 18 6 -2.1742 3.6405 1.1591 19 7 -3.5471 4.1922 1.1173 20 8 -4.3865 3.7967 1.9064 21 8 -3.8375 5.0416 0.2941 22 6 -1.8466 2.6762 2.0944 23 6 -0.5649 2.1574 2.1357 24 9 -0.2459 1.2150 3.0496 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.7189 0.3624 -3.1940 31 1 1.8010 1.4417 2.0449 32 1 -1.4825 4.8432 -0.4673 33 1 -2.5923 2.3277 2.7936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273877765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:30 Heat of formation + Delta-G solvation = -64.690265 kcal Electronic energy + Delta-G solvation = -23123.757639 eV Core-core repulsion = 19210.075493 eV Total energy + Delta-G solvation = -3913.682146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.25179 -48.79583 -42.14155 -39.47330 -36.84773 -36.54766 -33.24926 -31.58895 -30.78905 -30.02100 -27.34208 -25.47381 -23.60397 -23.02425 -22.11474 -20.47230 -19.61829 -18.84982 -17.77325 -17.54849 -16.91415 -16.83775 -16.51327 -15.99693 -15.74336 -15.26447 -14.97509 -14.82654 -13.96458 -13.66488 -13.18376 -13.07793 -12.67630 -12.43271 -12.26274 -11.71022 -11.68519 -11.52767 -11.23437 -11.20053 -11.13603 -11.01520 -10.69794 -10.47081 -10.24681 -10.02739 -9.22493 -9.15436 -8.62709 -7.82413 -6.30196 -4.34272 -0.22221 0.60256 1.26546 1.32968 2.91857 3.16785 3.24991 3.28019 3.58230 3.93256 4.07744 4.26034 4.36268 4.46449 4.81549 5.02253 5.25186 5.31059 5.42017 5.64666 5.74879 5.76742 5.95187 6.11532 6.35465 6.38887 6.51601 6.58035 6.77572 7.10778 7.41479 7.62330 7.66274 7.76354 8.00441 8.69282 9.30940 10.78549 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027311 B = 0.004973 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.987926 B = 5629.614540 C = 6063.617598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C 0.211 3.789 4 H 0.065 0.935 5 C -0.515 4.515 6 H 0.068 0.932 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.603 5.603 14 C 0.147 3.853 15 C 0.098 3.902 16 F -0.097 7.097 17 C -0.071 4.071 18 C -0.050 4.050 19 N 0.042 4.958 20 O -0.168 6.168 21 O -0.164 6.164 22 C -0.070 4.070 23 C 0.055 3.945 24 F -0.118 7.118 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.045 0.955 30 H 0.266 0.734 31 H 0.361 0.639 32 H 0.168 0.832 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 2.313 6.404 10.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.182 4.182 3 C 0.109 3.891 4 H 0.082 0.918 5 C -0.553 4.553 6 H 0.086 0.914 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.222 5.222 14 C 0.037 3.963 15 C 0.074 3.926 16 F -0.075 7.075 17 C -0.092 4.092 18 C -0.136 4.136 19 N 0.560 4.440 20 O -0.381 6.381 21 O -0.378 6.378 22 C -0.091 4.091 23 C 0.030 3.970 24 F -0.096 7.096 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.184 0.816 32 H 0.185 0.815 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.834 2.472 6.050 9.456 hybrid contribution 0.439 -0.832 0.002 0.941 sum -6.394 1.640 6.052 8.956 Atomic orbital electron populations 1.22157 0.98850 1.00789 1.00349 1.22256 0.92283 1.00500 1.03120 1.19826 0.97918 0.88997 0.82394 0.91768 1.20937 0.89672 1.43309 1.01413 0.91429 1.24916 0.98753 0.94992 0.95116 1.69931 1.35357 1.43953 1.03190 0.86409 0.84576 0.78481 0.77599 1.20559 1.21047 1.19644 1.57878 1.13761 1.39047 1.11497 1.19638 0.90213 0.93904 0.92505 1.16371 0.86560 0.96978 0.92675 1.91662 1.63086 1.87077 1.65717 1.20739 0.90167 1.00010 0.98289 1.19923 0.83431 1.05354 1.04898 1.43294 1.02447 0.99198 0.99109 1.94527 1.43682 1.63433 1.36487 1.94539 1.85274 1.25415 1.32605 1.20604 0.96271 0.94327 0.97861 1.16778 0.92033 0.93362 0.94810 1.91545 1.92823 1.61522 1.63731 0.94330 0.93189 0.93473 0.88523 0.93675 0.92468 0.81597 0.81450 0.81753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.24 37.16 0.34 -2.55 16 2 C -0.14 -2.93 5.31 -26.73 -0.14 -3.07 16 3 C 0.21 4.65 1.74 -68.87 -0.12 4.53 16 4 H 0.06 1.57 5.82 -51.93 -0.30 1.27 16 5 C -0.52 -12.87 8.77 -34.44 -0.30 -13.18 16 6 H 0.07 1.70 7.82 -52.49 -0.41 1.29 16 7 C 0.07 1.67 5.18 -17.82 -0.09 1.58 16 8 N -0.89 -23.42 12.03 55.43 0.67 -22.76 16 9 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.60 -11.29 6.23 -52.90 -0.33 -11.62 16 14 C 0.15 2.40 4.22 -83.56 -0.35 2.05 16 15 C 0.10 1.59 6.75 -39.27 -0.27 1.33 16 16 F -0.10 -1.84 15.34 2.25 0.03 -1.80 16 17 C -0.07 -0.98 9.53 -39.53 -0.38 -1.36 16 18 C -0.05 -0.69 6.85 -79.92 -0.55 -1.23 16 19 N 0.04 0.61 4.45 33.98 0.15 0.77 16 20 O -0.17 -2.47 18.44 -29.46 -0.54 -3.01 16 21 O -0.16 -2.46 18.44 -29.46 -0.54 -3.01 16 22 C -0.07 -0.89 9.53 -39.53 -0.38 -1.26 16 23 C 0.05 0.77 5.13 -39.27 -0.20 0.57 16 24 F -0.12 -1.63 15.78 2.25 0.04 -1.59 16 25 H 0.04 0.62 3.62 -51.93 -0.19 0.43 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.26 6.64 -51.93 -0.35 1.92 16 29 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.36 6.21 7.31 -39.29 -0.29 5.92 16 32 H 0.17 2.01 7.60 -52.49 -0.40 1.61 16 33 H 0.16 1.75 7.60 -52.49 -0.40 1.35 16 LS Contribution 292.83 15.07 4.41 4.41 Total: -1.00 -25.76 292.83 -6.30 -32.06 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -2.73 Total: 4.19 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.43 Total: -12.60 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.49 Total: -33.61 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -1.09 Total: -6.02 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.07 Total: -3.39 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -25.76 -6.30 -32.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273877765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.630 kcal (2) G-P(sol) polarization free energy of solvation -25.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds