Wall clock time and date at job start Tue Mar 31 2020 06:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 H 1.08990 * 109.47092 * 306.98454 * 3 2 1 5 5 C 1.50700 * 109.47081 * 186.98388 * 3 2 1 6 6 H 1.08000 * 120.00083 * 245.40272 * 5 3 2 7 7 C 1.37881 * 119.99939 * 65.12076 * 5 3 2 8 8 N 1.31513 * 119.99728 * 7.11834 * 7 5 3 9 9 Si 1.86799 * 119.99961 * 187.11996 * 7 5 3 10 10 H 1.48500 * 109.47151 * 94.86184 * 9 7 5 11 11 H 1.48503 * 109.46977 * 214.85818 * 9 7 5 12 12 H 1.48498 * 109.47031 * 334.85573 * 9 7 5 13 13 N 1.46899 * 109.46968 * 66.98648 * 3 2 1 14 14 C 1.40018 * 110.99820 * 274.99738 * 13 3 2 15 15 C 1.38991 * 120.08554 * 299.72745 * 14 13 3 16 16 F 1.35100 * 120.04613 * 359.97438 * 15 14 13 17 17 C 1.38336 * 119.91419 * 179.70293 * 15 14 13 18 18 C 1.38279 * 120.08160 * 0.57433 * 17 15 14 19 19 N 1.48022 * 119.90915 * 179.74824 * 18 17 15 20 20 O 1.21808 * 119.99425 * 179.97438 * 19 18 17 21 21 O 1.21797 * 120.00647 * 359.97438 * 19 18 17 22 22 C 1.38274 * 120.17270 * 359.71966 * 18 17 15 23 23 C 1.38334 * 120.08535 * 359.97438 * 22 18 17 24 24 F 1.35102 * 120.04062 * 180.02562 * 23 22 18 25 25 H 1.08996 * 109.46809 * 300.00327 * 1 2 3 26 26 H 1.08997 * 109.46596 * 59.99966 * 1 2 3 27 27 H 1.09001 * 109.47214 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47197 * 239.99536 * 2 1 3 29 29 H 1.09004 * 109.46727 * 119.99698 * 2 1 3 30 30 H 0.97003 * 119.99404 * 179.97438 * 8 7 5 31 31 H 1.00903 * 111.00528 * 38.95627 * 13 3 2 32 32 H 1.07995 * 119.95846 * 180.32211 * 17 15 14 33 33 H 1.08002 * 119.95518 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5783 1.9911 -0.8208 5 6 3.5371 1.4460 -0.1728 6 1 4.1720 1.8018 0.6252 7 6 4.0966 0.9896 -1.3474 8 7 3.3252 0.6832 -2.3675 9 14 5.9501 0.8063 -1.4897 10 1 6.3349 -0.5928 -1.1739 11 1 6.3753 1.1362 -2.8737 12 1 6.6136 1.7299 -0.5346 13 7 1.6928 2.0846 1.2748 14 6 0.3943 2.6072 1.2360 15 6 0.0628 3.5809 0.3013 16 9 0.9933 4.0255 -0.5715 17 6 -1.2228 4.0903 0.2621 18 6 -2.1742 3.6405 1.1591 19 7 -3.5471 4.1922 1.1173 20 8 -4.3865 3.7967 1.9064 21 8 -3.8375 5.0416 0.2941 22 6 -1.8466 2.6762 2.0944 23 6 -0.5649 2.1574 2.1357 24 9 -0.2459 1.2150 3.0496 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.7189 0.3624 -3.1940 31 1 1.8010 1.4417 2.0449 32 1 -1.4825 4.8432 -0.4673 33 1 -2.5923 2.3277 2.7936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273877765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:29 Heat of formation + Delta-G solvation = -77.933782 kcal Electronic energy + Delta-G solvation = -23124.331921 eV Core-core repulsion = 19210.075493 eV Total energy + Delta-G solvation = -3914.256428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.38428 -50.15898 -43.30357 -40.74552 -38.29219 -37.71459 -34.94235 -33.19868 -31.95565 -31.36518 -28.94081 -26.85807 -25.06486 -24.39000 -23.37146 -22.07610 -20.79872 -20.04292 -19.19649 -18.70633 -18.35328 -18.04163 -17.92026 -17.34713 -16.97681 -16.69230 -16.60497 -16.10003 -15.55593 -15.13161 -14.72336 -14.25983 -14.07825 -13.71712 -13.53296 -13.37703 -13.18738 -12.90186 -12.71854 -12.69537 -12.42488 -12.30468 -12.26084 -12.13500 -11.91990 -11.66204 -10.91619 -10.54596 -10.30375 -9.22133 -8.23142 -6.32150 -1.40471 -0.54799 0.06358 0.15802 1.40261 1.42974 1.52225 1.73796 2.34807 2.40875 2.74940 2.86318 3.09152 3.16217 3.34802 3.65430 4.05539 4.12995 4.21475 4.27568 4.33045 4.43176 4.51992 4.75032 4.88597 4.97341 5.03642 5.17291 5.32318 5.47779 5.58658 5.95110 6.10115 6.25208 6.47541 6.75408 7.35901 8.84936 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.027311 B = 0.004973 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.987926 B = 5629.614540 C = 6063.617598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C 0.219 3.781 4 H 0.037 0.963 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.022 3.978 8 N -0.914 5.914 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.614 5.614 14 C 0.131 3.869 15 C 0.080 3.920 16 F -0.120 7.120 17 C -0.057 4.057 18 C -0.045 4.045 19 N 0.042 4.958 20 O -0.157 6.157 21 O -0.176 6.176 22 C -0.051 4.051 23 C 0.065 3.935 24 F -0.112 7.112 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.265 0.735 31 H 0.367 0.633 32 H 0.184 0.816 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.290 2.165 7.765 12.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.115 3.885 4 H 0.055 0.945 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.179 4.179 8 N -0.553 5.553 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.235 5.235 14 C 0.023 3.977 15 C 0.056 3.944 16 F -0.098 7.098 17 C -0.077 4.077 18 C -0.130 4.130 19 N 0.559 4.441 20 O -0.374 6.374 21 O -0.388 6.388 22 C -0.071 4.071 23 C 0.041 3.959 24 F -0.091 7.091 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.191 0.809 32 H 0.201 0.799 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.118 2.355 7.409 11.240 hybrid contribution 0.688 -0.740 -0.346 1.068 sum -7.430 1.614 7.064 10.378 Atomic orbital electron populations 1.22048 0.96450 1.02068 1.00596 1.22079 0.94427 0.99243 1.01839 1.19463 0.96074 0.89672 0.83249 0.94504 1.21268 0.91559 1.42754 1.01122 0.92244 1.25596 1.02330 0.94953 0.94984 1.70034 1.36724 1.44986 1.03515 0.85542 0.80318 0.78530 0.77254 1.19915 1.21160 1.19496 1.57642 1.16009 1.39608 1.10223 1.19672 0.89911 0.94332 0.93793 1.16591 0.87076 0.97813 0.92884 1.91603 1.64112 1.87467 1.66614 1.20810 0.89076 0.99591 0.98256 1.19968 0.83047 1.05202 1.04788 1.43345 1.02539 0.99156 0.99055 1.94526 1.43725 1.63010 1.36115 1.94559 1.85425 1.25855 1.32944 1.20828 0.96015 0.92912 0.97343 1.16661 0.91884 0.93261 0.94142 1.91567 1.92829 1.61275 1.63408 0.92689 0.94280 0.91644 0.91757 0.92906 0.92624 0.80928 0.79861 0.78845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.24 71.98 0.67 -4.59 16 2 C -0.14 -5.64 5.31 30.60 0.16 -5.48 16 3 C 0.22 9.84 1.74 44.17 0.08 9.92 16 4 H 0.04 1.87 5.82 -2.39 -0.01 1.85 16 5 C -0.53 -26.98 8.77 25.60 0.22 -26.75 16 6 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 7 C 0.02 1.12 5.18 84.66 0.44 1.56 16 8 N -0.91 -49.51 12.03 21.45 0.26 -49.25 16 9 Si 0.96 41.46 29.54 68.60 2.03 43.49 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 N -0.61 -22.97 6.23 -321.28 -2.00 -24.97 16 14 C 0.13 4.15 4.22 38.19 0.16 4.31 16 15 C 0.08 2.55 6.75 22.47 0.15 2.71 16 16 F -0.12 -4.64 15.34 44.97 0.69 -3.95 16 17 C -0.06 -1.47 9.53 22.30 0.21 -1.26 16 18 C -0.04 -1.09 6.85 36.39 0.25 -0.84 16 19 N 0.04 1.09 4.45 -46.41 -0.21 0.88 16 20 O -0.16 -4.07 18.44 18.88 0.35 -3.72 16 21 O -0.18 -4.90 18.44 18.89 0.35 -4.55 16 22 C -0.05 -1.10 9.53 22.30 0.21 -0.89 16 23 C 0.06 1.66 5.13 22.47 0.12 1.77 16 24 F -0.11 -2.78 15.78 44.97 0.71 -2.07 16 25 H 0.05 1.65 3.62 -2.39 -0.01 1.65 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.06 3.08 6.64 -2.39 -0.02 3.06 16 29 H 0.05 2.04 8.00 -2.38 -0.02 2.02 16 30 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.37 12.43 7.31 -89.69 -0.66 11.77 16 32 H 0.18 4.10 7.60 -2.91 -0.02 4.08 16 33 H 0.19 3.17 7.60 -2.91 -0.02 3.15 16 Total: -1.00 -55.39 292.83 5.37 -50.02 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.53 Total: 13.66 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 2.67 Total: -19.54 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -1.95 Total: -73.35 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.70 Total: -8.27 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 1.40 Total: -6.01 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -55.39 5.37 -50.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273877765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.913 kcal (2) G-P(sol) polarization free energy of solvation -55.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds