Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86804 * 119.99774 * 2 1 4 4 H 1.48505 * 109.47008 * 274.98363 * 3 2 1 5 5 H 1.48493 * 109.47382 * 34.98533 * 3 2 1 6 6 H 1.48501 * 109.46799 * 154.98931 * 3 2 1 7 7 C 1.40047 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00013 * 186.14202 * 7 2 1 9 9 C 1.46372 * 120.00038 * 6.15125 * 7 2 1 10 10 O 1.21683 * 119.99994 * 353.93442 * 9 7 2 11 11 N 1.34780 * 120.00152 * 173.93604 * 9 7 2 12 12 C 1.46498 * 120.00033 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.46886 * 180.02562 * 12 11 9 14 14 C 1.38426 * 120.44581 * 259.99989 * 13 12 11 15 15 C 1.38783 * 118.48390 * 179.72555 * 14 13 12 16 16 C 1.38091 * 119.29183 * 0.25928 * 15 14 13 17 17 N 1.31935 * 120.83158 * 359.97438 * 16 15 14 18 18 C 1.32282 * 121.64725 * 0.02562 * 17 16 15 19 19 O 1.35678 * 119.68204 * 179.97438 * 18 17 16 20 20 C 1.42901 * 117.00048 * 0.02562 * 19 18 17 21 21 C 1.53000 * 109.47076 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.47194 * 300.00331 * 21 20 19 23 23 F 1.39905 * 109.46861 * 60.00062 * 21 20 19 24 24 H 0.97003 * 120.00032 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99398 * 0.02562 * 11 9 7 26 26 H 1.09003 * 109.46699 * 60.00928 * 12 11 9 27 27 H 1.08998 * 109.47450 * 300.00571 * 12 11 9 28 28 H 1.07993 * 120.75365 * 0.02562 * 14 13 12 29 29 H 1.08000 * 120.35045 * 180.22952 * 15 14 13 30 30 H 1.07990 * 119.58501 * 179.97438 * 16 15 14 31 31 H 1.08998 * 109.46962 * 299.99909 * 20 19 18 32 32 H 1.08999 * 109.47225 * 59.99826 * 20 19 18 33 33 H 1.09001 * 109.47094 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4121 0.5919 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0995 9 6 1.2815 -2.4768 -0.1369 10 8 0.0647 -2.4827 -0.1388 11 7 1.9612 -3.6340 -0.2604 12 6 1.2351 -4.8991 -0.3963 13 6 2.2201 -6.0333 -0.5165 14 6 2.5230 -6.5709 -1.7556 15 6 3.4401 -7.6106 -1.8196 16 6 4.0146 -8.0775 -0.6539 17 7 3.7022 -7.5477 0.5133 18 6 2.8328 -6.5559 0.6149 19 8 2.5405 -6.0412 1.8358 20 6 3.2080 -6.6182 2.9599 21 6 2.7546 -5.9128 4.2396 22 9 3.0691 -4.5520 4.1584 23 9 1.3719 -6.0636 4.3903 24 1 -0.4850 0.8401 0.0004 25 1 2.9312 -3.6293 -0.2585 26 1 0.6094 -4.8648 -1.2883 27 1 0.6080 -5.0543 0.4816 28 1 2.0598 -6.1869 -2.6524 29 1 3.7014 -8.0500 -2.7710 30 1 4.7285 -8.8866 -0.6983 31 1 2.9633 -7.6785 3.0228 32 1 4.2853 -6.5003 2.8426 33 1 3.2634 -6.3532 5.0970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274798961.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = -142.114593 kcal Electronic energy + Delta-G solvation = -22369.597151 eV Core-core repulsion = 18452.557634 eV Total energy + Delta-G solvation = -3917.039517 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.85660 -46.88967 -40.71981 -37.98421 -37.15468 -34.13630 -32.42457 -31.83141 -31.06882 -29.59198 -26.88236 -25.08089 -24.09374 -22.46097 -21.86483 -19.60545 -18.81699 -17.48044 -17.42610 -17.18984 -16.99622 -15.96973 -15.82390 -15.48766 -15.17844 -14.56195 -14.06580 -13.79542 -13.73946 -13.49981 -13.29006 -13.20926 -13.13900 -12.92980 -12.32402 -12.19730 -11.61931 -11.36001 -11.29666 -11.10043 -11.03783 -10.82182 -10.37815 -10.16772 -9.83019 -9.67183 -8.77933 -8.50502 -7.50666 -7.41554 -6.11870 -4.55248 1.09423 1.25664 2.75803 3.18809 3.25626 3.29839 3.70684 3.72701 4.06292 4.17522 4.19383 4.40562 4.65946 4.75661 4.85432 4.94013 4.99279 5.13365 5.24256 5.30163 5.32906 5.56791 5.79669 5.93753 6.12353 6.32631 6.52285 6.59562 7.16069 7.51245 7.76367 8.00240 8.15782 8.41169 9.10173 9.61190 10.67541 10.86340 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.005431 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.230366 B = 5154.268346 C = 6420.013158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.558 3.442 10 O -0.581 6.581 11 N -0.758 5.758 12 C 0.182 3.818 13 C -0.151 4.151 14 C -0.030 4.030 15 C -0.210 4.210 16 C 0.131 3.869 17 N -0.546 5.546 18 C 0.331 3.669 19 O -0.278 6.278 20 C 0.019 3.981 21 C 0.270 3.730 22 F -0.192 7.192 23 F -0.198 7.198 24 H 0.267 0.733 25 H 0.379 0.621 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.030 -16.627 2.383 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.362 3.638 10 O -0.463 6.463 11 N -0.414 5.414 12 C 0.057 3.943 13 C -0.154 4.154 14 C -0.056 4.056 15 C -0.231 4.231 16 C -0.025 4.025 17 N -0.270 5.270 18 C 0.152 3.848 19 O -0.184 6.184 20 C -0.058 4.058 21 C 0.216 3.784 22 F -0.173 7.173 23 F -0.179 7.179 24 H 0.078 0.922 25 H 0.210 0.790 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.097 -16.587 3.252 19.195 hybrid contribution 0.714 0.913 -0.694 1.350 sum 9.811 -15.674 2.558 18.667 Atomic orbital electron populations 1.70037 1.07045 1.27134 1.35515 1.25693 0.94575 1.00206 0.92651 0.86379 0.80290 0.81614 0.78576 1.19860 1.20464 1.18917 1.20858 0.94060 0.89521 1.53616 0.91496 1.18207 0.87113 0.82233 0.76275 1.90594 1.14085 1.86313 1.55358 1.46129 1.08408 1.04938 1.81893 1.19589 0.91549 0.81664 1.01492 1.20296 1.02648 1.01444 0.90999 1.21468 0.94102 0.93204 0.96822 1.21961 1.00855 1.00211 1.00045 1.22319 0.96560 0.97016 0.86570 1.67292 1.17223 1.12369 1.30079 1.19631 0.90435 0.89306 0.85435 1.86468 1.63114 1.56927 1.11938 1.23794 0.99253 0.98789 0.83990 1.22061 0.78497 0.79608 0.98193 1.93082 1.92375 1.34394 1.97456 1.93035 1.32706 1.95418 1.96784 0.92194 0.79040 0.92313 0.91890 0.83850 0.84574 0.82557 0.88856 0.88691 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.74 11.85 55.55 0.66 -23.08 16 2 C 0.09 2.54 5.49 -17.37 -0.10 2.45 16 3 Si 0.91 20.79 29.56 -169.99 -5.03 15.76 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.54 -15.98 9.53 -35.63 -0.34 -16.31 16 8 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 9 C 0.56 16.56 7.74 -12.99 -0.10 16.46 16 10 O -0.58 -19.48 15.04 5.20 0.08 -19.40 16 11 N -0.76 -18.02 5.54 -62.91 -0.35 -18.37 16 12 C 0.18 3.75 5.49 -5.20 -0.03 3.72 16 13 C -0.15 -2.45 5.28 -104.32 -0.55 -3.00 16 14 C -0.03 -0.39 9.81 -39.31 -0.39 -0.77 16 15 C -0.21 -2.18 10.11 -39.43 -0.40 -2.57 16 16 C 0.13 1.40 11.18 -17.56 -0.20 1.21 16 17 N -0.55 -7.35 9.22 -13.33 -0.12 -7.47 16 18 C 0.33 5.26 7.47 -17.12 -0.13 5.13 16 19 O -0.28 -4.70 9.25 -18.73 -0.17 -4.87 16 20 C 0.02 0.22 5.53 37.16 0.21 0.43 16 21 C 0.27 3.19 5.63 37.16 0.21 3.40 16 22 F -0.19 -3.08 17.28 2.25 0.04 -3.04 16 23 F -0.20 -2.97 17.28 2.25 0.04 -2.93 16 24 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 25 H 0.38 8.24 8.44 -40.82 -0.34 7.89 16 26 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 27 H 0.06 1.43 7.86 -51.93 -0.41 1.02 16 28 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 308.62 15.07 4.65 4.65 Total: -1.00 -38.23 308.62 -5.26 -43.49 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -3.25 Total: 5.14 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -1.81 Total: 10.13 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.19 Total: -48.92 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.10 Total: -24.28 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.08 Total: -5.97 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -38.23 -5.26 -43.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274798961.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.626 kcal (2) G-P(sol) polarization free energy of solvation -38.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds