Wall clock time and date at job start Tue Mar 31 2020 06:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48499 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47079 * 299.99733 * 3 2 1 6 6 H 1.48497 * 109.46762 * 59.99872 * 3 2 1 7 7 C 1.37884 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99824 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46990 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.47158 * 180.02562 * 11 10 9 13 13 C 1.81398 * 103.00163 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47126 * 179.97438 * 13 12 11 15 15 C 1.38252 * 119.99908 * 269.97496 * 14 13 12 16 16 C 1.38221 * 120.00067 * 180.02562 * 15 14 13 17 17 C 1.38254 * 119.99717 * 359.95220 * 16 15 14 18 18 C 1.38218 * 120.00086 * 0.13893 * 17 16 15 19 19 C 1.50706 * 119.99798 * 179.97438 * 18 17 16 20 20 F 1.39897 * 109.46875 * 119.90553 * 19 18 17 21 21 F 1.39903 * 109.46738 * 239.90843 * 19 18 17 22 22 C 1.38215 * 119.99797 * 89.99768 * 14 13 12 23 23 H 0.96998 * 119.99883 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99663 * 9 7 2 25 25 H 1.09000 * 109.47143 * 300.00306 * 9 7 2 26 26 H 1.09003 * 109.47184 * 60.00016 * 10 9 7 27 27 H 1.09000 * 109.46879 * 299.99355 * 10 9 7 28 28 H 1.09001 * 109.47149 * 59.99364 * 11 10 9 29 29 H 1.09006 * 109.47002 * 299.99511 * 11 10 9 30 30 H 1.08993 * 109.47581 * 59.99307 * 13 12 11 31 31 H 1.09001 * 109.46610 * 299.99232 * 13 12 11 32 32 H 1.08001 * 120.00307 * 359.97438 * 15 14 13 33 33 H 1.07999 * 120.00168 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.00092 * 180.02562 * 17 16 15 35 35 H 1.08998 * 109.46840 * 359.90452 * 19 18 17 36 36 H 1.07995 * 120.00164 * 359.70322 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9872 0.0012 12 16 2.6589 -6.3659 0.0035 13 6 1.5806 -7.8247 0.0016 14 6 2.4246 -9.0732 0.0026 15 6 2.8130 -9.6459 -1.1942 16 6 3.5866 -10.7914 -1.1933 17 6 3.9728 -11.3637 0.0045 18 6 3.5829 -10.7921 1.2010 19 6 4.0033 -11.4164 2.5067 20 9 4.7597 -10.4967 3.2410 21 9 2.8668 -11.7760 3.2390 22 6 2.8098 -9.6459 1.2001 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8712 -3.6040 0.8923 27 1 2.8725 -3.6048 -0.8878 28 1 0.8544 -5.0450 -0.8894 29 1 0.8525 -5.0448 0.8906 30 1 0.9530 -7.8115 -0.8894 31 1 0.9499 -7.8113 0.8905 32 1 2.5113 -9.1989 -2.1299 33 1 3.8898 -11.2390 -2.1282 34 1 4.5776 -12.2584 0.0053 35 1 4.6036 -12.3043 2.3082 36 1 2.5101 -9.1959 2.1350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281191444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:59 Heat of formation + Delta-G solvation = -120.212184 kcal Electronic energy + Delta-G solvation = -18690.859113 eV Core-core repulsion = 15321.062571 eV Total energy + Delta-G solvation = -3369.796543 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.090 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.95677 -47.96758 -40.37027 -36.38662 -34.30759 -34.06606 -32.61800 -29.50596 -28.41677 -27.02803 -25.37430 -23.20178 -22.45528 -21.85885 -18.63291 -18.31561 -18.22948 -18.17922 -17.10045 -17.02711 -16.55857 -16.41092 -16.02564 -15.51509 -15.11666 -14.90463 -14.49081 -14.35618 -14.35173 -14.08753 -13.89049 -13.78789 -13.40096 -13.32161 -12.84725 -12.77944 -12.77343 -12.40806 -12.15544 -11.80523 -11.68371 -11.50642 -11.23604 -10.92863 -10.58766 -10.05270 -9.75531 -8.71219 -8.23228 -6.34290 -0.07972 0.18061 0.92721 1.39211 1.39549 1.53260 1.62173 2.39694 2.68163 2.78024 3.10203 3.27381 3.43483 3.71579 3.93052 4.00860 4.03994 4.07509 4.08774 4.20265 4.33136 4.47355 4.56343 4.58462 4.78882 4.81785 4.94065 4.95156 5.10567 5.30172 5.36473 5.46706 5.47496 5.65501 5.79975 5.86891 6.20322 6.81431 7.35043 8.88811 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029419 B = 0.002522 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.540174 B =11101.615314 C =11497.129776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.069 4.069 12 S -0.288 6.288 13 C -0.040 4.040 14 C -0.086 4.086 15 C -0.089 4.089 16 C -0.121 4.121 17 C -0.076 4.076 18 C -0.185 4.185 19 C 0.308 3.692 20 F -0.216 7.216 21 F -0.214 7.214 22 C -0.084 4.084 23 H 0.265 0.735 24 H -0.002 1.002 25 H -0.004 1.004 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.166 0.834 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.316 -28.708 -0.964 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.217 4.217 12 S -0.058 6.058 13 C -0.187 4.187 14 C -0.088 4.088 15 C -0.108 4.108 16 C -0.138 4.138 17 C -0.094 4.094 18 C -0.185 4.185 19 C 0.255 3.745 20 F -0.198 7.198 21 F -0.196 7.196 22 C -0.104 4.104 23 H 0.074 0.926 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.183 0.817 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.247 -28.507 -0.913 29.690 hybrid contribution -1.470 1.412 0.366 2.071 sum 6.777 -27.096 -0.547 27.936 Atomic orbital electron populations 1.70089 1.07727 1.27834 1.51579 1.25971 0.95812 1.03342 0.94598 0.85386 0.79010 0.78674 0.77921 1.18759 1.20118 1.20253 1.21691 0.93531 0.92347 1.50736 0.92380 1.18981 0.94146 0.92354 0.95305 1.21169 0.98024 0.91598 1.01167 1.23378 0.98864 0.94608 1.04847 1.87132 1.18925 1.01589 1.98172 1.22305 0.98263 0.91395 1.06737 1.19269 1.00241 0.95185 0.94083 1.21494 0.96134 0.95648 0.97556 1.21527 0.97410 0.95374 0.99502 1.21399 0.97595 1.00081 0.90356 1.20545 1.03581 0.98645 0.95770 1.20934 0.79978 0.91530 0.82089 1.92999 1.76503 1.70548 1.79733 1.92988 1.54456 1.92299 1.79812 1.20933 0.96455 0.95040 0.97999 0.92645 0.98346 0.98580 0.92905 0.92583 0.89833 0.90328 0.87621 0.88895 0.84111 0.81997 0.81341 0.81727 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.65 4.97 29.85 0.15 1.80 16 10 C -0.08 -3.47 5.16 30.59 0.16 -3.31 16 11 C -0.07 -2.40 5.94 71.98 0.43 -1.97 16 12 S -0.29 -8.89 21.72 -56.49 -1.23 -10.11 16 13 C -0.04 -0.91 6.07 71.24 0.43 -0.48 16 14 C -0.09 -1.82 5.14 -19.87 -0.10 -1.93 16 15 C -0.09 -1.48 9.70 22.27 0.22 -1.27 16 16 C -0.12 -1.45 10.05 22.27 0.22 -1.22 16 17 C -0.08 -0.85 9.67 22.27 0.22 -0.64 16 18 C -0.18 -3.09 5.37 -19.86 -0.11 -3.20 16 19 C 0.31 4.52 5.45 71.24 0.39 4.91 16 20 F -0.22 -4.54 17.26 44.97 0.78 -3.76 16 21 F -0.21 -4.11 17.26 44.97 0.78 -3.34 16 22 C -0.08 -1.82 9.26 22.27 0.21 -1.62 16 23 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.11 2.09 8.08 -2.39 -0.02 2.07 16 31 H 0.09 2.05 8.09 -2.39 -0.02 2.03 16 32 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 34 H 0.17 0.53 7.95 -2.91 -0.02 0.50 16 35 H 0.17 0.80 7.88 -2.39 -0.02 0.78 16 36 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -69.77 332.80 6.60 -63.17 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.06 Total: 3.72 kcal Atomic # 6 Polarization: -42.73 SS G_CDS: 2.90 Total: -39.82 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.28 Total: -56.67 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 1.55 Total: -7.10 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.23 Total: -10.11 kcal Total: -69.77 6.60 -63.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281191444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.046 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds