Wall clock time and date at job start Tue Mar 31 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48505 * 109.47204 * 239.99225 * 3 2 1 5 5 H 1.48499 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47113 * 119.99789 * 3 2 1 7 7 C 1.37880 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47311 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46919 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00209 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99608 * 180.02562 * 11 10 9 14 14 C 1.39582 * 119.99725 * 179.97438 * 13 11 10 15 15 N 1.32269 * 119.72486 * 0.02562 * 14 13 11 16 16 C 1.31962 * 121.69132 * 180.02562 * 15 14 13 17 17 C 1.38091 * 120.95067 * 359.97438 * 16 15 14 18 18 C 1.38778 * 119.35545 * 0.26032 * 17 16 15 19 19 C 1.38800 * 118.44426 * 359.52233 * 18 17 16 20 20 O 1.35978 * 120.49226 * 180.22534 * 19 18 17 21 21 C 1.42895 * 117.00441 * 0.23172 * 20 19 18 22 22 F 1.39905 * 109.47036 * 300.00405 * 21 20 19 23 23 F 1.39903 * 109.46877 * 60.00177 * 21 20 19 24 24 H 0.97005 * 119.99292 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47025 * 59.99042 * 9 7 2 26 26 H 1.08999 * 109.47166 * 299.99695 * 9 7 2 27 27 H 1.08996 * 109.47043 * 59.99923 * 10 9 7 28 28 H 1.08996 * 109.47361 * 299.99711 * 10 9 7 29 29 H 0.96993 * 119.99851 * 0.02562 * 13 11 10 30 30 H 1.07999 * 119.52200 * 180.02562 * 16 15 14 31 31 H 1.08002 * 120.31819 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.77361 * 179.74759 * 18 17 16 33 33 H 1.09000 * 109.47619 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4915 -4.9673 -0.0001 12 8 0.2786 -4.9672 0.0000 13 7 2.1653 -6.1345 0.0003 14 6 1.4673 -7.3433 0.0003 15 7 0.1447 -7.3368 -0.0007 16 6 -0.5540 -8.4563 -0.0003 17 6 0.0746 -9.6858 0.0007 18 6 1.4612 -9.7409 0.0067 19 6 2.1703 -8.5478 0.0014 20 8 3.5301 -8.5532 0.0023 21 6 4.1738 -9.8290 0.0038 22 9 3.7942 -10.5415 1.1464 23 9 3.7959 -10.5432 -1.1382 24 1 -0.4849 0.8402 -0.0004 25 1 0.6245 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8717 -3.6045 -0.8894 29 1 3.1353 -6.1345 0.0014 30 1 -1.6330 -8.4101 -0.0015 31 1 -0.5074 -10.5957 0.0014 32 1 1.9765 -10.6901 0.0116 33 1 5.2550 -9.6905 0.0049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291808907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:27 Heat of formation + Delta-G solvation = -137.008490 kcal Electronic energy + Delta-G solvation = -21941.196004 eV Core-core repulsion = 18024.377905 eV Total energy + Delta-G solvation = -3916.818100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.73733 -47.73543 -41.01607 -39.03245 -38.14862 -34.67944 -33.45982 -32.06044 -31.09026 -29.77074 -26.64587 -25.93223 -23.90062 -23.16766 -21.56363 -19.82625 -19.33114 -18.88166 -18.31556 -17.51926 -17.09112 -16.30239 -15.79683 -15.57319 -15.31238 -15.04431 -14.77444 -14.42247 -14.35705 -14.07292 -13.85155 -13.34597 -13.33251 -13.21815 -12.51694 -12.32597 -12.26724 -12.15504 -11.19305 -10.92603 -10.65044 -10.62431 -9.97290 -9.96368 -9.65915 -9.60799 -9.12953 -8.79423 -8.31899 -8.03698 -5.95375 -4.00120 0.96047 1.09844 2.12607 3.03281 3.05826 3.15407 3.35224 3.40037 3.41694 3.80308 3.88812 4.23838 4.33629 4.47278 4.54221 4.68245 4.90197 5.14381 5.39518 5.49420 5.65964 5.88253 6.00459 6.17907 6.19232 6.27504 6.80455 6.85854 7.41788 7.74068 7.85120 8.06664 8.08138 8.37897 8.70238 9.07803 9.63341 11.15504 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.003309 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.353312 B = 8459.819212 C = 9217.064971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.126 4.126 11 C 0.497 3.503 12 O -0.464 6.464 13 N -0.664 5.664 14 C 0.374 3.626 15 N -0.444 5.444 16 C 0.114 3.886 17 C -0.181 4.181 18 C -0.117 4.117 19 C 0.005 3.995 20 O -0.319 6.319 21 C 0.413 3.587 22 F -0.199 7.199 23 F -0.199 7.199 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.418 0.582 30 H 0.164 0.836 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.812 -24.027 0.013 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.167 4.167 11 C 0.285 3.715 12 O -0.331 6.331 13 N -0.312 5.312 14 C 0.140 3.860 15 N -0.159 5.159 16 C -0.044 4.044 17 C -0.203 4.203 18 C -0.144 4.144 19 C -0.044 4.044 20 O -0.236 6.236 21 C 0.322 3.678 22 F -0.181 7.181 23 F -0.181 7.181 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.255 0.745 30 H 0.182 0.818 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.443 -22.818 0.012 24.002 hybrid contribution 1.350 -0.383 0.001 1.403 sum 8.793 -23.202 0.013 24.812 Atomic orbital electron populations 1.69991 1.06056 1.26729 1.49945 1.25021 0.94828 0.99224 0.95261 0.86640 0.79531 0.83144 0.78532 1.20252 1.21287 1.20245 1.21160 0.92901 0.90930 1.51712 0.92593 1.18924 0.93144 0.89219 0.98821 1.21921 1.00850 0.91053 1.02828 1.21970 0.89234 0.84916 0.75427 1.90778 1.13663 1.86330 1.42302 1.44170 1.10686 1.03420 1.72959 1.18112 0.88218 0.83926 0.95749 1.67946 1.03579 1.30359 1.14061 1.22765 1.00650 0.86577 0.94376 1.21873 0.93863 0.99838 1.04701 1.21709 0.95701 0.96534 1.00429 1.19273 0.81716 0.94500 1.08874 1.86561 1.17961 1.29738 1.89312 1.23385 0.97400 0.75214 0.71756 1.93102 1.93392 1.79540 1.52093 1.93103 1.93434 1.79454 1.52127 0.92864 0.95655 0.95645 0.89870 0.89879 0.74537 0.81842 0.84272 0.83927 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.55 5.64 -27.88 -0.16 -2.71 16 11 C 0.50 9.93 7.79 -10.98 -0.09 9.84 16 12 O -0.46 -11.26 14.24 5.56 0.08 -11.18 16 13 N -0.66 -10.48 5.39 -11.29 -0.06 -10.55 16 14 C 0.37 5.96 7.45 -154.44 -1.15 4.81 16 15 N -0.44 -7.77 7.87 -12.22 -0.10 -7.87 16 16 C 0.11 1.50 11.17 -17.55 -0.20 1.30 16 17 C -0.18 -1.92 10.10 -39.44 -0.40 -2.31 16 18 C -0.12 -1.31 8.35 -39.17 -0.33 -1.64 16 19 C 0.01 0.06 6.52 -38.92 -0.25 -0.19 16 20 O -0.32 -3.19 9.68 -19.67 -0.19 -3.38 16 21 C 0.41 2.74 5.98 101.05 0.60 3.35 16 22 F -0.20 -1.62 15.61 2.25 0.04 -1.59 16 23 F -0.20 -1.62 15.63 2.25 0.04 -1.59 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.42 5.08 8.04 -40.82 -0.33 4.75 16 30 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.14 1.34 5.26 -52.49 -0.28 1.07 16 33 H 0.18 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 300.49 15.07 4.53 4.53 Total: -1.00 -36.57 300.49 -5.55 -42.12 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.10 Total: -0.07 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -2.49 Total: -0.34 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.58 Total: -45.11 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.11 Total: -14.56 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.07 Total: -3.18 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -36.57 -5.55 -42.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291808907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.892 kcal (2) G-P(sol) polarization free energy of solvation -36.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds