Wall clock time and date at job start Tue Mar 31 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48505 * 109.47204 * 239.99225 * 3 2 1 5 5 H 1.48499 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47113 * 119.99789 * 3 2 1 7 7 C 1.37880 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47311 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46919 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00209 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99608 * 180.02562 * 11 10 9 14 14 C 1.39582 * 119.99725 * 179.97438 * 13 11 10 15 15 N 1.32269 * 119.72486 * 0.02562 * 14 13 11 16 16 C 1.31962 * 121.69132 * 180.02562 * 15 14 13 17 17 C 1.38091 * 120.95067 * 359.97438 * 16 15 14 18 18 C 1.38778 * 119.35545 * 0.26032 * 17 16 15 19 19 C 1.38800 * 118.44426 * 359.52233 * 18 17 16 20 20 O 1.35978 * 120.49226 * 180.22534 * 19 18 17 21 21 C 1.42895 * 117.00441 * 0.23172 * 20 19 18 22 22 F 1.39905 * 109.47036 * 300.00405 * 21 20 19 23 23 F 1.39903 * 109.46877 * 60.00177 * 21 20 19 24 24 H 0.97005 * 119.99292 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47025 * 59.99042 * 9 7 2 26 26 H 1.08999 * 109.47166 * 299.99695 * 9 7 2 27 27 H 1.08996 * 109.47043 * 59.99923 * 10 9 7 28 28 H 1.08996 * 109.47361 * 299.99711 * 10 9 7 29 29 H 0.96993 * 119.99851 * 0.02562 * 13 11 10 30 30 H 1.07999 * 119.52200 * 180.02562 * 16 15 14 31 31 H 1.08002 * 120.31819 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.77361 * 179.74759 * 18 17 16 33 33 H 1.09000 * 109.47619 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4915 -4.9673 -0.0001 12 8 0.2786 -4.9672 0.0000 13 7 2.1653 -6.1345 0.0003 14 6 1.4673 -7.3433 0.0003 15 7 0.1447 -7.3368 -0.0007 16 6 -0.5540 -8.4563 -0.0003 17 6 0.0746 -9.6858 0.0007 18 6 1.4612 -9.7409 0.0067 19 6 2.1703 -8.5478 0.0014 20 8 3.5301 -8.5532 0.0023 21 6 4.1738 -9.8290 0.0038 22 9 3.7942 -10.5415 1.1464 23 9 3.7959 -10.5432 -1.1382 24 1 -0.4849 0.8402 -0.0004 25 1 0.6245 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8717 -3.6045 -0.8894 29 1 3.1353 -6.1345 0.0014 30 1 -1.6330 -8.4101 -0.0015 31 1 -0.5074 -10.5957 0.0014 32 1 1.9765 -10.6901 0.0116 33 1 5.2550 -9.6905 0.0049 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291808907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:27 Heat of formation + Delta-G solvation = -163.344645 kcal Electronic energy + Delta-G solvation = -21942.338026 eV Core-core repulsion = 18024.377905 eV Total energy + Delta-G solvation = -3917.960121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.30726 -48.31026 -42.09080 -40.37551 -39.07689 -36.04504 -35.52330 -33.25865 -32.81571 -30.94001 -27.84491 -27.29076 -25.20241 -24.14916 -23.27060 -21.26978 -20.16682 -19.71409 -18.90652 -18.83548 -18.49877 -17.75099 -16.86884 -16.84508 -16.50245 -16.32628 -16.07881 -15.90218 -15.10577 -15.01839 -14.68321 -14.58221 -14.40940 -14.21346 -14.08893 -13.86454 -13.28630 -13.24367 -12.97135 -12.77120 -12.50604 -11.94117 -11.88395 -11.64105 -11.35975 -11.20538 -10.68323 -10.54258 -10.15047 -9.11782 -8.16440 -6.30748 -0.04982 0.12278 1.43456 1.44671 1.48243 1.55853 1.70426 1.82918 2.44559 2.52217 2.74153 3.16642 3.34395 3.46322 3.61110 3.69591 3.77987 3.97235 4.11900 4.30606 4.50465 4.53788 4.74101 4.97164 5.04554 5.15487 5.20335 5.50715 5.62817 5.81870 5.86297 6.17760 6.20488 6.86891 6.94406 7.32888 7.39473 8.96129 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.003309 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.353312 B = 8459.819212 C = 9217.064971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.042 3.958 10 C -0.114 4.114 11 C 0.502 3.498 12 O -0.521 6.521 13 N -0.649 5.649 14 C 0.332 3.668 15 N -0.495 5.495 16 C 0.091 3.909 17 C -0.155 4.155 18 C -0.122 4.122 19 C 0.020 3.980 20 O -0.323 6.323 21 C 0.408 3.592 22 F -0.207 7.207 23 F -0.207 7.207 24 H 0.263 0.737 25 H -0.017 1.017 26 H -0.017 1.017 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.434 0.566 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.165 0.835 33 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.719 -25.656 0.017 28.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.004 3.996 10 C -0.153 4.153 11 C 0.290 3.710 12 O -0.393 6.393 13 N -0.298 5.298 14 C 0.100 3.900 15 N -0.211 5.211 16 C -0.066 4.066 17 C -0.175 4.175 18 C -0.149 4.149 19 C -0.029 4.029 20 O -0.240 6.240 21 C 0.319 3.681 22 F -0.189 7.189 23 F -0.189 7.189 24 H 0.071 0.929 25 H 0.001 0.999 26 H 0.002 0.998 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.274 0.726 30 H 0.197 0.803 31 H 0.198 0.802 32 H 0.183 0.817 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 10.415 -24.518 0.016 26.638 hybrid contribution 0.440 -0.097 -0.001 0.451 sum 10.856 -24.614 0.015 26.902 Atomic orbital electron populations 1.70184 1.08364 1.27862 1.51375 1.26149 0.95710 1.03990 0.94609 0.85355 0.78017 0.77251 0.79500 1.18641 1.21456 1.18631 1.21676 0.94084 0.91444 1.50947 0.90349 1.18699 0.93685 0.92347 0.94845 1.21675 0.99362 0.88907 1.05390 1.21778 0.88446 0.86037 0.74763 1.90756 1.15864 1.87247 1.45414 1.43673 1.11287 1.02590 1.72262 1.18201 0.88393 0.84572 0.98868 1.67775 1.05111 1.33082 1.15101 1.23158 1.01506 0.86703 0.95256 1.22294 0.94025 1.00237 1.00980 1.22069 0.96073 0.96780 0.99961 1.19192 0.83122 0.93684 1.06915 1.86571 1.16333 1.32201 1.88923 1.24342 0.99153 0.73723 0.70904 1.93087 1.93601 1.79645 1.52597 1.93088 1.93643 1.79562 1.52635 0.92881 0.99854 0.99843 0.87156 0.87170 0.72571 0.80322 0.80235 0.81745 0.74536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.09 13.29 21.45 0.28 -59.81 16 2 C -0.01 -0.42 5.46 84.66 0.46 0.05 16 3 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.79 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.36 4.26 29.85 0.13 2.49 16 10 C -0.11 -4.61 5.64 29.85 0.17 -4.44 16 11 C 0.50 20.74 7.79 87.66 0.68 21.43 16 12 O -0.52 -27.03 14.24 -3.04 -0.04 -27.07 16 13 N -0.65 -20.53 5.39 -308.02 -1.66 -22.19 16 14 C 0.33 10.63 7.45 132.98 0.99 11.62 16 15 N -0.50 -17.90 7.87 -192.58 -1.52 -19.41 16 16 C 0.09 2.37 11.17 84.64 0.95 3.31 16 17 C -0.15 -2.91 10.10 22.36 0.23 -2.68 16 18 C -0.12 -2.43 8.35 22.53 0.19 -2.24 16 19 C 0.02 0.48 6.52 22.70 0.15 0.62 16 20 O -0.32 -5.63 9.68 -93.30 -0.90 -6.53 16 21 C 0.41 3.97 5.98 113.37 0.68 4.65 16 22 F -0.21 -2.72 15.61 44.97 0.70 -2.01 16 23 F -0.21 -2.72 15.63 44.97 0.70 -2.02 16 24 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 25 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 26 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 27 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 28 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 29 H 0.43 10.05 8.04 -92.71 -0.75 9.31 16 30 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.17 2.53 5.26 -2.91 -0.02 2.51 16 33 H 0.24 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: -1.00 -85.37 300.49 4.86 -80.50 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.42 Total: 8.10 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 4.85 Total: 4.00 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -2.89 Total: -101.40 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.95 Total: -33.61 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 1.40 Total: -4.03 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -85.37 4.86 -80.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291808907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.842 kcal (2) G-P(sol) polarization free energy of solvation -85.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds