Wall clock time and date at job start Tue Mar 31 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86804 * 119.99839 * 2 1 4 4 H 1.48501 * 109.47130 * 240.00294 * 3 2 1 5 5 H 1.48497 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47305 * 119.99974 * 3 2 1 7 7 C 1.39927 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00123 * 196.78562 * 7 2 1 9 9 C 1.41407 * 120.00154 * 16.78783 * 7 2 1 10 10 C 1.40780 * 120.21160 * 205.14344 * 9 7 2 11 11 C 1.37644 * 119.88802 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.33007 * 359.72588 * 11 10 9 13 13 C 1.39273 * 120.42214 * 0.54981 * 12 11 10 14 14 N 1.39848 * 119.95412 * 179.72376 * 13 12 11 15 15 C 1.34784 * 119.99391 * 325.54281 * 14 13 12 16 16 O 1.21539 * 120.00325 * 354.88216 * 15 14 13 17 17 C 1.47965 * 119.99582 * 174.88980 * 15 14 13 18 18 C 1.39911 * 120.94444 * 359.97438 * 17 15 14 19 19 C 1.38035 * 119.03325 * 179.97438 * 18 17 15 20 20 N 1.31865 * 120.98506 * 0.02562 * 19 18 17 21 21 C 1.31725 * 122.09610 * 359.97438 * 20 19 18 22 22 C 1.38533 * 120.84881 * 0.02562 * 21 20 19 23 23 F 1.35095 * 120.54005 * 179.97438 * 22 21 20 24 24 C 1.38308 * 120.09859 * 359.45259 * 13 12 11 25 25 H 0.96995 * 119.99789 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.05236 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.83438 * 179.97438 * 11 10 9 28 28 H 1.07994 * 119.79064 * 180.27762 * 12 11 10 29 29 H 0.97001 * 120.00890 * 145.53801 * 14 13 12 30 30 H 1.07999 * 120.48566 * 0.02562 * 18 17 15 31 31 H 1.07998 * 119.51290 * 179.72168 * 19 18 17 32 32 H 1.08002 * 119.57823 * 180.02562 * 21 20 19 33 33 H 1.07998 * 120.16116 * 180.25208 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0535 -1.2315 0.2707 9 6 1.3463 -2.4105 -0.3526 10 6 1.8190 -3.6477 0.1247 11 6 1.1701 -4.8105 -0.2237 12 6 0.0499 -4.7696 -1.0376 13 6 -0.4259 -3.5535 -1.5219 14 7 -1.5542 -3.5241 -2.3476 15 6 -1.7785 -4.5284 -3.2182 16 8 -0.9545 -5.4117 -3.3524 17 6 -3.0278 -4.5553 -4.0105 18 6 -3.9897 -3.5490 -3.8715 19 6 -5.1407 -3.6129 -4.6308 20 7 -5.3412 -4.6037 -5.4775 21 6 -4.4640 -5.5726 -5.6416 22 6 -3.2808 -5.5891 -4.9211 23 9 -2.3857 -6.5861 -5.0939 24 6 0.2126 -2.3744 -1.1830 25 1 -0.4849 0.8400 -0.0004 26 1 2.6898 -3.6844 0.7624 27 1 1.5337 -5.7592 0.1426 28 1 -0.4552 -5.6868 -1.3018 29 1 -2.1754 -2.7811 -2.2939 30 1 -3.8337 -2.7335 -3.1808 31 1 -5.8905 -2.8426 -4.5264 32 1 -4.6697 -6.3642 -6.3468 33 1 -0.1579 -1.4305 -1.5547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313446804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:55 Heat of formation + Delta-G solvation = -18.930879 kcal Electronic energy + Delta-G solvation = -21106.536237 eV Core-core repulsion = 17625.607592 eV Total energy + Delta-G solvation = -3480.928646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.02603 -40.61382 -39.34011 -37.24589 -34.48682 -33.55199 -32.72142 -31.14341 -29.61932 -28.53983 -25.38292 -25.09246 -23.71325 -21.73404 -21.23344 -19.88530 -18.37028 -17.71428 -17.40374 -17.11166 -16.06300 -15.84168 -15.55805 -14.92714 -14.82836 -14.58800 -14.41805 -13.99583 -13.63809 -13.56415 -13.13926 -12.81873 -12.42759 -12.34474 -11.72179 -11.36394 -11.16846 -10.83660 -10.76200 -10.34895 -10.14585 -10.02487 -9.81784 -9.59564 -9.28626 -9.25488 -9.06975 -7.45840 -7.11964 -6.77466 -4.43944 0.34544 0.61036 2.52211 2.80409 3.02074 3.05371 3.06527 3.19023 3.27727 3.59216 3.72538 3.88377 4.10796 4.34886 4.44068 4.55694 4.62147 5.05267 5.34867 5.47231 5.51269 5.60436 6.19831 6.23556 6.53929 6.56682 6.77256 6.94662 6.98579 7.17126 7.43545 7.49711 7.55772 7.84182 7.94768 8.01594 8.21016 8.39898 8.59664 8.81672 8.87165 10.12354 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.004185 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.956834 B = 6688.715628 C = 7685.291789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.121 3.879 10 C -0.225 4.225 11 C -0.084 4.084 12 C -0.226 4.226 13 C 0.141 3.859 14 N -0.651 5.651 15 C 0.545 3.455 16 O -0.501 6.501 17 C -0.118 4.118 18 C -0.112 4.112 19 C 0.082 3.918 20 N -0.445 5.445 21 C 0.068 3.932 22 C 0.105 3.895 23 F -0.105 7.105 24 C -0.179 4.179 25 H 0.280 0.720 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.402 0.598 30 H 0.151 0.849 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 -2.593 -7.276 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.097 0.903 9 C 0.118 3.882 10 C -0.245 4.245 11 C -0.103 4.103 12 C -0.247 4.247 13 C 0.050 3.950 14 N -0.295 5.295 15 C 0.330 3.670 16 O -0.375 6.375 17 C -0.130 4.130 18 C -0.133 4.133 19 C -0.074 4.074 20 N -0.154 5.154 21 C -0.091 4.091 22 C 0.082 3.918 23 F -0.083 7.083 24 C -0.200 4.200 25 H 0.091 0.909 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.238 0.762 30 H 0.169 0.831 31 H 0.188 0.812 32 H 0.191 0.809 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.568 -3.122 -7.840 13.524 hybrid contribution 0.915 1.065 0.572 1.516 sum -9.653 -2.058 -7.268 12.257 Atomic orbital electron populations 1.69794 1.07556 1.29175 1.36061 1.25871 0.94755 1.01243 0.92084 0.86365 0.80165 0.80152 0.80042 1.18846 1.20361 1.18967 1.19522 0.97837 0.90965 1.40948 0.90293 1.17353 0.90514 0.92207 0.88162 1.21072 1.03783 0.92854 1.06742 1.20422 0.95476 0.96722 0.97709 1.20295 1.02110 0.95456 1.06872 1.17571 0.88281 0.95304 0.93833 1.43298 1.25825 1.23295 1.37074 1.17901 0.85436 0.83362 0.80261 1.90860 1.44931 1.36678 1.65080 1.20782 0.97253 0.96188 0.98808 1.22428 0.93436 0.97938 0.99468 1.22805 0.96276 0.96349 0.91942 1.67583 1.30010 1.01188 1.16614 1.22963 0.88592 0.98431 0.99106 1.18913 0.89389 0.86756 0.96776 1.91626 1.65869 1.57290 1.93504 1.21071 0.99899 0.95213 1.03856 0.90932 0.88702 0.88863 0.88111 0.76220 0.83100 0.81226 0.80917 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.48 10.94 55.55 0.61 -18.87 16 2 C 0.08 1.87 5.16 -17.35 -0.09 1.78 16 3 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.94 9.05 -37.74 -0.34 -12.29 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.12 3.15 5.57 -106.85 -0.59 2.55 16 10 C -0.22 -5.50 9.79 -38.84 -0.38 -5.88 16 11 C -0.08 -1.96 10.01 -39.69 -0.40 -2.35 16 12 C -0.23 -5.35 8.66 -39.09 -0.34 -5.69 16 13 C 0.14 3.26 6.25 -83.79 -0.52 2.73 16 14 N -0.65 -12.04 5.28 -10.73 -0.06 -12.10 16 15 C 0.54 10.00 7.52 -12.27 -0.09 9.90 16 16 O -0.50 -11.09 13.22 5.33 0.07 -11.02 16 17 C -0.12 -1.66 5.91 -104.60 -0.62 -2.28 16 18 C -0.11 -1.16 9.61 -39.03 -0.38 -1.54 16 19 C 0.08 0.76 11.17 -17.61 -0.20 0.56 16 20 N -0.45 -4.78 10.33 -13.24 -0.14 -4.92 16 21 C 0.07 0.73 11.17 -17.49 -0.20 0.53 16 22 C 0.10 1.41 7.33 -38.79 -0.28 1.12 16 23 F -0.10 -1.63 15.71 2.25 0.04 -1.60 16 24 C -0.18 -4.45 8.60 -38.68 -0.33 -4.78 16 25 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 26 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 27 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 28 H 0.10 2.37 6.47 -52.49 -0.34 2.03 16 29 H 0.40 6.04 6.97 -40.82 -0.28 5.75 16 30 H 0.15 1.22 6.55 -52.49 -0.34 0.88 16 31 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.12 3.07 6.17 -52.49 -0.32 2.75 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -30.47 296.79 -7.33 -37.80 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -2.53 Total: 8.85 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -4.76 Total: -15.63 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.41 Total: -35.88 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.47 -7.33 -37.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313446804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.865 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds