Wall clock time and date at job start Tue Mar 31 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86804 * 119.99839 * 2 1 4 4 H 1.48501 * 109.47130 * 240.00294 * 3 2 1 5 5 H 1.48497 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47305 * 119.99974 * 3 2 1 7 7 C 1.39927 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00123 * 196.78562 * 7 2 1 9 9 C 1.41407 * 120.00154 * 16.78783 * 7 2 1 10 10 C 1.40780 * 120.21160 * 205.14344 * 9 7 2 11 11 C 1.37644 * 119.88802 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.33007 * 359.72588 * 11 10 9 13 13 C 1.39273 * 120.42214 * 0.54981 * 12 11 10 14 14 N 1.39848 * 119.95412 * 179.72376 * 13 12 11 15 15 C 1.34784 * 119.99391 * 325.54281 * 14 13 12 16 16 O 1.21539 * 120.00325 * 354.88216 * 15 14 13 17 17 C 1.47965 * 119.99582 * 174.88980 * 15 14 13 18 18 C 1.39911 * 120.94444 * 359.97438 * 17 15 14 19 19 C 1.38035 * 119.03325 * 179.97438 * 18 17 15 20 20 N 1.31865 * 120.98506 * 0.02562 * 19 18 17 21 21 C 1.31725 * 122.09610 * 359.97438 * 20 19 18 22 22 C 1.38533 * 120.84881 * 0.02562 * 21 20 19 23 23 F 1.35095 * 120.54005 * 179.97438 * 22 21 20 24 24 C 1.38308 * 120.09859 * 359.45259 * 13 12 11 25 25 H 0.96995 * 119.99789 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.05236 * 359.97438 * 10 9 7 27 27 H 1.08005 * 119.83438 * 179.97438 * 11 10 9 28 28 H 1.07994 * 119.79064 * 180.27762 * 12 11 10 29 29 H 0.97001 * 120.00890 * 145.53801 * 14 13 12 30 30 H 1.07999 * 120.48566 * 0.02562 * 18 17 15 31 31 H 1.07998 * 119.51290 * 179.72168 * 19 18 17 32 32 H 1.08002 * 119.57823 * 180.02562 * 21 20 19 33 33 H 1.07998 * 120.16116 * 180.25208 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0535 -1.2315 0.2707 9 6 1.3463 -2.4105 -0.3526 10 6 1.8190 -3.6477 0.1247 11 6 1.1701 -4.8105 -0.2237 12 6 0.0499 -4.7696 -1.0376 13 6 -0.4259 -3.5535 -1.5219 14 7 -1.5542 -3.5241 -2.3476 15 6 -1.7785 -4.5284 -3.2182 16 8 -0.9545 -5.4117 -3.3524 17 6 -3.0278 -4.5553 -4.0105 18 6 -3.9897 -3.5490 -3.8715 19 6 -5.1407 -3.6129 -4.6308 20 7 -5.3412 -4.6037 -5.4775 21 6 -4.4640 -5.5726 -5.6416 22 6 -3.2808 -5.5891 -4.9211 23 9 -2.3857 -6.5861 -5.0939 24 6 0.2126 -2.3744 -1.1830 25 1 -0.4849 0.8400 -0.0004 26 1 2.6898 -3.6844 0.7624 27 1 1.5337 -5.7592 0.1426 28 1 -0.4552 -5.6868 -1.3018 29 1 -2.1754 -2.7811 -2.2939 30 1 -3.8337 -2.7335 -3.1808 31 1 -5.8905 -2.8426 -4.5264 32 1 -4.6697 -6.3642 -6.3468 33 1 -0.1579 -1.4305 -1.5547 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313446804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:54 Heat of formation + Delta-G solvation = -37.389248 kcal Electronic energy + Delta-G solvation = -21107.336652 eV Core-core repulsion = 17625.607592 eV Total energy + Delta-G solvation = -3481.729061 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.10356 -41.80070 -40.61600 -38.99892 -36.16203 -35.26241 -33.85612 -32.01036 -31.49502 -30.25209 -27.22666 -26.27039 -24.64109 -23.28951 -22.93391 -21.51789 -19.61066 -19.34668 -18.48338 -18.29150 -17.49564 -17.11552 -16.85971 -16.55729 -16.51356 -16.02140 -15.45535 -15.21763 -14.96847 -14.72211 -14.51153 -14.44562 -14.19677 -13.54611 -13.22318 -13.12223 -12.84598 -12.63576 -12.38524 -11.94516 -11.61878 -11.44492 -11.17024 -11.13376 -10.92163 -10.66472 -10.13675 -9.36997 -8.92695 -8.58487 -6.37284 -0.69113 -0.22439 0.81682 1.01786 1.41523 1.50256 1.53743 1.73986 1.88489 2.22607 2.54067 2.74205 2.79695 3.27490 3.36295 3.51765 3.62393 3.69026 4.23896 4.38643 4.50282 4.62659 4.66162 4.72491 4.79894 5.01989 5.11172 5.15259 5.32645 5.40406 5.70084 5.77776 5.98379 6.05310 6.26216 6.44534 6.61028 6.64406 6.90883 6.91627 7.05488 8.33117 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.022008 B = 0.004185 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.956834 B = 6688.715628 C = 7685.291789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.041 3.959 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.093 3.907 10 C -0.245 4.245 11 C -0.083 4.083 12 C -0.243 4.243 13 C 0.148 3.852 14 N -0.645 5.645 15 C 0.545 3.455 16 O -0.546 6.546 17 C -0.138 4.138 18 C -0.102 4.102 19 C 0.098 3.902 20 N -0.451 5.451 21 C 0.082 3.918 22 C 0.080 3.920 23 F -0.125 7.125 24 C -0.198 4.198 25 H 0.291 0.709 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.419 0.581 30 H 0.175 0.825 31 H 0.213 0.787 32 H 0.201 0.799 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 -1.050 -7.937 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.174 4.174 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.528 4.528 8 H 0.095 0.905 9 C 0.091 3.909 10 C -0.265 4.265 11 C -0.102 4.102 12 C -0.264 4.264 13 C 0.055 3.945 14 N -0.290 5.290 15 C 0.333 3.667 16 O -0.424 6.424 17 C -0.150 4.150 18 C -0.122 4.122 19 C -0.058 4.058 20 N -0.159 5.159 21 C -0.077 4.077 22 C 0.058 3.942 23 F -0.104 7.104 24 C -0.219 4.219 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.257 0.743 30 H 0.192 0.808 31 H 0.229 0.771 32 H 0.218 0.782 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.501 -1.579 -8.508 15.204 hybrid contribution 1.378 0.574 0.754 1.672 sum -11.123 -1.005 -7.754 13.597 Atomic orbital electron populations 1.69816 1.08692 1.30738 1.35193 1.26659 0.95598 1.04113 0.91075 0.85280 0.78894 0.75859 0.79859 1.18891 1.18796 1.18623 1.19785 0.98099 0.92162 1.42706 0.90528 1.17755 0.91347 0.93090 0.88755 1.21243 1.04611 0.92996 1.07673 1.20719 0.94981 0.97535 0.96951 1.20458 1.02712 0.95690 1.07505 1.17612 0.89000 0.94530 0.93383 1.43193 1.24957 1.24255 1.36597 1.18526 0.86346 0.82070 0.79714 1.90826 1.46891 1.38185 1.66460 1.20546 0.96377 0.98437 0.99614 1.22712 0.92709 0.97184 0.99596 1.23489 0.96122 0.96241 0.89937 1.67727 1.29744 1.01488 1.16968 1.23331 0.87068 0.98875 0.98404 1.19255 0.90323 0.86657 0.97986 1.91569 1.66809 1.58195 1.93793 1.21031 1.00510 0.95547 1.04851 0.89845 0.87892 0.86270 0.88268 0.74262 0.80799 0.77073 0.78213 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.62 10.94 21.82 0.24 -39.39 16 2 C 0.04 1.98 5.16 85.25 0.44 2.42 16 3 Si 0.98 36.40 29.59 68.60 2.03 38.43 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 5 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.50 -26.22 9.05 23.46 0.21 -26.01 16 8 H 0.08 3.91 7.90 -2.91 -0.02 3.88 16 9 C 0.09 5.01 5.57 -21.31 -0.12 4.89 16 10 C -0.25 -12.31 9.79 22.75 0.22 -12.09 16 11 C -0.08 -3.91 10.01 22.20 0.22 -3.69 16 12 C -0.24 -11.71 8.66 22.59 0.20 -11.52 16 13 C 0.15 6.92 6.25 38.13 0.24 7.16 16 14 N -0.64 -23.89 5.28 -306.13 -1.62 -25.51 16 15 C 0.55 20.22 7.52 86.82 0.65 20.87 16 16 O -0.55 -24.98 13.22 -3.84 -0.05 -25.03 16 17 C -0.14 -3.77 5.91 -19.85 -0.12 -3.88 16 18 C -0.10 -1.83 9.61 22.63 0.22 -1.61 16 19 C 0.10 1.40 11.17 84.64 0.95 2.35 16 20 N -0.45 -8.13 10.33 -195.82 -2.02 -10.15 16 21 C 0.08 1.56 11.17 84.78 0.95 2.51 16 22 C 0.08 2.12 7.33 22.78 0.17 2.29 16 23 F -0.13 -4.01 15.71 44.97 0.71 -3.30 16 24 C -0.20 -10.06 8.60 22.86 0.20 -9.87 16 25 H 0.29 12.54 8.30 -92.71 -0.77 11.77 16 26 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 27 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 28 H 0.10 4.78 6.47 -2.91 -0.02 4.76 16 29 H 0.42 12.23 6.97 -92.71 -0.65 11.58 16 30 H 0.17 2.24 6.55 -2.91 -0.02 2.22 16 31 H 0.21 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.12 6.01 6.17 -2.91 -0.02 5.99 16 Total: -1.00 -68.07 296.79 4.24 -63.83 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.53 Total: 27.31 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 4.42 Total: -26.19 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -3.40 Total: -75.05 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.71 Total: -3.30 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Total: -68.07 4.24 -63.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313446804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.443 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds