Wall clock time and date at job start Tue Mar 31 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47083 * 270.00020 * 3 2 1 5 5 H 1.48501 * 109.46909 * 29.99777 * 3 2 1 6 6 H 1.48501 * 109.47326 * 149.99859 * 3 2 1 7 7 C 1.39931 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00164 * 168.99016 * 7 2 1 9 9 C 1.41407 * 119.99804 * 348.98984 * 7 2 1 10 10 C 1.40781 * 120.21243 * 331.79882 * 9 7 2 11 11 C 1.37643 * 119.88895 * 179.97438 * 10 9 7 12 12 C 1.38524 * 120.32741 * 0.02562 * 11 10 9 13 13 C 1.39273 * 120.42286 * 0.02562 * 12 11 10 14 14 N 1.39864 * 119.94628 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00283 * 146.35618 * 14 13 12 16 16 O 1.21568 * 119.99661 * 354.86303 * 15 14 13 17 17 C 1.47813 * 120.00389 * 174.86491 * 15 14 13 18 18 C 1.39567 * 120.54723 * 359.97271 * 17 15 14 19 19 N 1.31651 * 120.61956 * 180.02562 * 18 17 15 20 20 C 1.31945 * 121.91391 * 359.97438 * 19 18 17 21 21 C 1.38534 * 121.04231 * 0.02562 * 20 19 18 22 22 F 1.35099 * 120.37491 * 179.97438 * 21 20 19 23 23 C 1.38612 * 119.25639 * 359.97438 * 21 20 19 24 24 C 1.38292 * 120.10442 * 0.23500 * 13 12 11 25 25 H 0.97000 * 120.00165 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.04914 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.83385 * 179.97438 * 11 10 9 28 28 H 1.07995 * 119.78734 * 180.02562 * 12 11 10 29 29 H 0.97001 * 119.99690 * 326.35398 * 14 13 12 30 30 H 1.08006 * 119.69200 * 0.02712 * 18 17 15 31 31 H 1.07999 * 119.48155 * 180.02562 * 20 19 18 32 32 H 1.08007 * 120.87030 * 179.72673 * 23 21 20 33 33 H 1.07998 * 120.16250 * 179.74502 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0730 -1.2205 -0.1781 9 6 1.3204 -2.4251 0.2350 10 6 0.1511 -2.4366 1.0189 11 6 -0.5131 -3.6213 1.2424 12 6 -0.0365 -4.8035 0.7000 13 6 1.1196 -4.8076 -0.0766 14 7 1.5922 -6.0071 -0.6188 15 6 2.2055 -6.0087 -1.8189 16 8 2.2654 -4.9853 -2.4722 17 6 2.8053 -7.2548 -2.3407 18 6 2.7437 -8.4361 -1.6000 19 7 3.2779 -9.5467 -2.0632 20 6 3.8869 -9.5928 -3.2328 21 6 3.9910 -8.4639 -4.0290 22 9 4.6180 -8.5263 -5.2240 23 6 3.4446 -7.2696 -3.5858 24 6 1.8039 -3.6283 -0.3080 25 1 -0.4850 0.8400 0.0004 26 1 -0.2245 -1.5174 1.4434 27 1 -1.4099 -3.6292 1.8442 28 1 -0.5648 -5.7280 0.8806 29 1 1.4785 -6.8378 -0.1311 30 1 2.2531 -8.4393 -0.6378 31 1 4.3110 -10.5253 -3.5748 32 1 3.5145 -6.3727 -4.1835 33 1 2.7028 -3.6310 -0.9066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313469375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:51 Heat of formation + Delta-G solvation = -19.509462 kcal Electronic energy + Delta-G solvation = -20768.717655 eV Core-core repulsion = 17287.763921 eV Total energy + Delta-G solvation = -3480.953735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.28728 -40.78160 -39.26876 -37.20975 -34.65399 -33.21231 -32.77869 -31.36425 -29.86920 -28.23849 -25.39687 -24.95414 -23.91633 -21.82710 -20.96344 -20.00635 -18.47997 -17.82215 -17.36264 -17.19957 -16.20462 -16.15255 -15.51929 -15.18684 -14.82810 -14.56813 -14.19621 -14.05173 -13.63493 -13.49036 -13.08750 -12.92567 -12.67922 -12.18928 -11.77442 -11.36729 -11.12820 -10.78337 -10.55069 -10.44484 -10.20726 -10.08179 -9.83471 -9.58917 -9.37159 -9.22861 -8.97863 -7.47490 -6.98700 -6.70198 -4.38589 0.22058 0.66027 2.50908 2.79202 3.03109 3.08662 3.12859 3.18920 3.23609 3.61985 3.69268 3.94785 3.96013 4.36283 4.44167 4.55391 4.64274 4.83435 5.20971 5.45259 5.62311 5.66232 6.14013 6.18644 6.31777 6.59872 6.90644 6.97058 7.02747 7.22567 7.33271 7.45406 7.64405 7.89173 8.02909 8.05192 8.17769 8.47864 8.63836 8.90210 8.93150 10.23440 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.003706 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.282030 B = 7552.519066 C = 8505.752574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.077 0.923 9 C 0.119 3.881 10 C -0.165 4.165 11 C -0.094 4.094 12 C -0.256 4.256 13 C 0.146 3.854 14 N -0.656 5.656 15 C 0.549 3.451 16 O -0.501 6.501 17 C -0.144 4.144 18 C 0.121 3.879 19 N -0.459 5.459 20 C 0.091 3.909 21 C 0.044 3.956 22 F -0.126 7.126 23 C -0.053 4.053 24 C -0.207 4.207 25 H 0.280 0.720 26 H 0.122 0.878 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.398 0.602 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 -14.160 -2.969 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.095 0.905 9 C 0.116 3.884 10 C -0.184 4.184 11 C -0.113 4.113 12 C -0.277 4.277 13 C 0.054 3.946 14 N -0.300 5.300 15 C 0.334 3.666 16 O -0.375 6.375 17 C -0.150 4.150 18 C -0.037 4.037 19 N -0.166 5.166 20 C -0.068 4.068 21 C 0.023 3.977 22 F -0.104 7.104 23 C -0.081 4.081 24 C -0.228 4.228 25 H 0.091 0.909 26 H 0.140 0.860 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.233 0.767 30 H 0.186 0.814 31 H 0.189 0.811 32 H 0.180 0.820 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.420 -14.020 -3.001 15.004 hybrid contribution 0.354 1.050 -0.630 1.275 sum 4.774 -12.970 -3.631 14.289 Atomic orbital electron populations 1.69792 1.07440 1.29039 1.36312 1.25883 0.94834 1.01237 0.92346 0.86263 0.80427 0.80505 0.79224 1.19496 1.20134 1.18529 1.19552 0.96010 0.90419 1.42753 0.90509 1.17502 0.91440 0.91636 0.87847 1.21438 0.98779 0.96710 1.01506 1.20491 0.98387 0.92794 0.99597 1.20054 0.98879 0.97576 1.11199 1.17398 0.94768 0.84321 0.98079 1.43297 1.57446 1.10328 1.18965 1.17895 0.79552 0.87497 0.81642 1.90886 1.56772 1.32845 1.57026 1.21066 1.01911 0.95993 0.96019 1.23115 0.94552 0.86817 0.99266 1.67750 1.08207 1.28116 1.12515 1.23109 0.96048 0.97710 0.89891 1.18662 0.99152 0.95796 0.84140 1.91553 1.79710 1.96912 1.42271 1.21847 0.92840 0.98170 0.95194 1.20981 1.03033 0.91871 1.06959 0.90945 0.85979 0.88863 0.89100 0.76650 0.81438 0.81074 0.81983 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.88 10.81 55.55 0.60 -20.28 16 2 C 0.07 1.88 5.25 -17.35 -0.09 1.78 16 3 Si 0.91 18.98 29.57 -169.99 -5.03 13.96 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.37 9.06 -37.74 -0.34 -12.71 16 8 H 0.08 2.02 7.87 -52.49 -0.41 1.60 16 9 C 0.12 3.20 5.55 -106.85 -0.59 2.61 16 10 C -0.16 -4.23 8.66 -38.84 -0.34 -4.56 16 11 C -0.09 -2.12 10.01 -39.69 -0.40 -2.52 16 12 C -0.26 -5.40 9.97 -39.09 -0.39 -5.79 16 13 C 0.15 3.17 6.26 -83.79 -0.52 2.64 16 14 N -0.66 -11.00 5.28 -10.77 -0.06 -11.06 16 15 C 0.55 9.46 7.51 -12.35 -0.09 9.36 16 16 O -0.50 -10.92 14.13 5.31 0.07 -10.84 16 17 C -0.14 -1.88 5.89 -104.84 -0.62 -2.49 16 18 C 0.12 1.29 10.71 -17.13 -0.18 1.10 16 19 N -0.46 -4.86 10.34 -12.86 -0.13 -5.00 16 20 C 0.09 0.85 11.16 -17.39 -0.19 0.65 16 21 C 0.04 0.46 7.33 -39.33 -0.29 0.18 16 22 F -0.13 -1.33 17.28 2.25 0.04 -1.29 16 23 C -0.05 -0.65 9.70 -38.79 -0.38 -1.03 16 24 C -0.21 -5.22 8.39 -38.68 -0.32 -5.54 16 25 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 26 H 0.12 3.23 6.18 -52.49 -0.32 2.90 16 27 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.40 4.89 6.90 -40.82 -0.28 4.61 16 30 H 0.17 1.33 6.43 -52.48 -0.34 1.00 16 31 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.16 2.02 7.74 -52.48 -0.41 1.62 16 33 H 0.11 2.75 6.44 -52.49 -0.34 2.41 16 LS Contribution 298.24 15.07 4.49 4.49 Total: -1.00 -30.70 298.24 -7.26 -37.96 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -2.50 Total: 8.38 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -4.75 Total: -16.32 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.41 Total: -36.33 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.84 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.70 -7.26 -37.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313469375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.451 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds