Wall clock time and date at job start Tue Mar 31 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47083 * 270.00020 * 3 2 1 5 5 H 1.48501 * 109.46909 * 29.99777 * 3 2 1 6 6 H 1.48501 * 109.47326 * 149.99859 * 3 2 1 7 7 C 1.39931 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00164 * 168.99016 * 7 2 1 9 9 C 1.41407 * 119.99804 * 348.98984 * 7 2 1 10 10 C 1.40781 * 120.21243 * 331.79882 * 9 7 2 11 11 C 1.37643 * 119.88895 * 179.97438 * 10 9 7 12 12 C 1.38524 * 120.32741 * 0.02562 * 11 10 9 13 13 C 1.39273 * 120.42286 * 0.02562 * 12 11 10 14 14 N 1.39864 * 119.94628 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00283 * 146.35618 * 14 13 12 16 16 O 1.21568 * 119.99661 * 354.86303 * 15 14 13 17 17 C 1.47813 * 120.00389 * 174.86491 * 15 14 13 18 18 C 1.39567 * 120.54723 * 359.97271 * 17 15 14 19 19 N 1.31651 * 120.61956 * 180.02562 * 18 17 15 20 20 C 1.31945 * 121.91391 * 359.97438 * 19 18 17 21 21 C 1.38534 * 121.04231 * 0.02562 * 20 19 18 22 22 F 1.35099 * 120.37491 * 179.97438 * 21 20 19 23 23 C 1.38612 * 119.25639 * 359.97438 * 21 20 19 24 24 C 1.38292 * 120.10442 * 0.23500 * 13 12 11 25 25 H 0.97000 * 120.00165 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.04914 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.83385 * 179.97438 * 11 10 9 28 28 H 1.07995 * 119.78734 * 180.02562 * 12 11 10 29 29 H 0.97001 * 119.99690 * 326.35398 * 14 13 12 30 30 H 1.08006 * 119.69200 * 0.02712 * 18 17 15 31 31 H 1.07999 * 119.48155 * 180.02562 * 20 19 18 32 32 H 1.08007 * 120.87030 * 179.72673 * 23 21 20 33 33 H 1.07998 * 120.16250 * 179.74502 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0730 -1.2205 -0.1781 9 6 1.3204 -2.4251 0.2350 10 6 0.1511 -2.4366 1.0189 11 6 -0.5131 -3.6213 1.2424 12 6 -0.0365 -4.8035 0.7000 13 6 1.1196 -4.8076 -0.0766 14 7 1.5922 -6.0071 -0.6188 15 6 2.2055 -6.0087 -1.8189 16 8 2.2654 -4.9853 -2.4722 17 6 2.8053 -7.2548 -2.3407 18 6 2.7437 -8.4361 -1.6000 19 7 3.2779 -9.5467 -2.0632 20 6 3.8869 -9.5928 -3.2328 21 6 3.9910 -8.4639 -4.0290 22 9 4.6180 -8.5263 -5.2240 23 6 3.4446 -7.2696 -3.5858 24 6 1.8039 -3.6283 -0.3080 25 1 -0.4850 0.8400 0.0004 26 1 -0.2245 -1.5174 1.4434 27 1 -1.4099 -3.6292 1.8442 28 1 -0.5648 -5.7280 0.8806 29 1 1.4785 -6.8378 -0.1311 30 1 2.2531 -8.4393 -0.6378 31 1 4.3110 -10.5253 -3.5748 32 1 3.5145 -6.3727 -4.1835 33 1 2.7028 -3.6310 -0.9066 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313469375.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:51 Heat of formation + Delta-G solvation = -38.699053 kcal Electronic energy + Delta-G solvation = -20769.549779 eV Core-core repulsion = 17287.763921 eV Total energy + Delta-G solvation = -3481.785858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.12536 -41.92470 -40.54307 -38.93826 -36.33382 -34.95433 -33.77532 -32.35526 -31.75853 -29.88147 -27.28721 -26.10695 -24.80162 -23.35327 -22.74630 -21.52887 -19.84296 -19.25673 -18.43918 -18.04962 -17.56885 -17.09860 -17.01159 -16.82038 -16.48635 -16.15373 -15.52626 -15.01633 -14.99602 -14.65997 -14.46541 -14.37438 -13.99788 -13.62770 -13.47994 -13.13250 -12.84491 -12.61197 -12.22910 -12.07644 -11.62066 -11.51683 -11.19338 -11.13850 -10.86991 -10.63810 -10.22297 -9.37427 -8.76573 -8.58956 -6.39289 -0.71556 -0.23016 0.88372 0.99097 1.36236 1.46745 1.51099 1.73230 1.91958 2.21445 2.51794 2.75667 2.81473 3.10101 3.46530 3.53345 3.60529 3.72218 3.91345 4.32759 4.47221 4.60873 4.62256 4.72379 4.97610 5.09027 5.10677 5.18833 5.31142 5.32555 5.71126 5.82014 6.07100 6.09771 6.32655 6.45984 6.51995 6.67782 6.92900 6.98839 7.13636 8.36491 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.003706 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.282030 B = 7552.519066 C = 8505.752574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.066 0.934 9 C 0.087 3.913 10 C -0.190 4.190 11 C -0.093 4.093 12 C -0.241 4.241 13 C 0.153 3.847 14 N -0.643 5.643 15 C 0.551 3.449 16 O -0.556 6.556 17 C -0.160 4.160 18 C 0.139 3.861 19 N -0.465 5.465 20 C 0.113 3.887 21 C 0.043 3.957 22 F -0.126 7.126 23 C -0.062 4.062 24 C -0.233 4.233 25 H 0.287 0.713 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.423 0.577 30 H 0.197 0.803 31 H 0.210 0.790 32 H 0.148 0.852 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 -16.914 -2.471 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.533 4.533 8 H 0.084 0.916 9 C 0.084 3.916 10 C -0.210 4.210 11 C -0.112 4.112 12 C -0.261 4.261 13 C 0.060 3.940 14 N -0.289 5.289 15 C 0.339 3.661 16 O -0.435 6.435 17 C -0.166 4.166 18 C -0.019 4.019 19 N -0.172 5.172 20 C -0.045 4.045 21 C 0.021 3.979 22 F -0.104 7.104 23 C -0.089 4.089 24 C -0.254 4.254 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.263 0.737 30 H 0.214 0.786 31 H 0.226 0.774 32 H 0.166 0.834 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.218 -16.842 -2.482 17.539 hybrid contribution 0.413 1.651 -0.839 1.897 sum 4.631 -15.192 -3.321 16.226 Atomic orbital electron populations 1.69843 1.08690 1.30317 1.36933 1.26702 0.95689 1.04280 0.91336 0.85191 0.79091 0.76009 0.79302 1.19201 1.18436 1.18322 1.19769 0.95872 0.92072 1.45552 0.91623 1.17835 0.92537 0.92382 0.88810 1.21400 0.99344 0.97572 1.02702 1.20877 0.98898 0.92182 0.99232 1.20523 0.97879 0.98851 1.08889 1.17453 0.94368 0.85026 0.97169 1.43110 1.56993 1.09795 1.19045 1.18498 0.78307 0.88208 0.81047 1.90867 1.58692 1.35336 1.58557 1.20644 1.04056 0.94888 0.96993 1.23469 0.93230 0.85604 0.99590 1.67925 1.08713 1.27546 1.12999 1.23709 0.93727 0.98348 0.88695 1.18637 0.99315 0.95489 0.84421 1.91558 1.79698 1.96864 1.42325 1.21860 0.93188 0.98722 0.95144 1.20957 1.03356 0.93275 1.07853 0.90201 0.87594 0.85683 0.84437 0.73677 0.78641 0.77376 0.83376 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.01 10.81 21.82 0.24 -44.78 16 2 C 0.03 1.77 5.25 85.25 0.45 2.22 16 3 Si 0.98 40.21 29.57 68.60 2.03 42.23 16 4 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 7 C -0.50 -28.93 9.06 23.46 0.21 -28.72 16 8 H 0.07 3.73 7.87 -2.91 -0.02 3.71 16 9 C 0.09 4.94 5.55 -21.31 -0.12 4.82 16 10 C -0.19 -10.06 8.66 22.75 0.20 -9.86 16 11 C -0.09 -4.10 10.01 22.20 0.22 -3.88 16 12 C -0.24 -9.54 9.97 22.59 0.23 -9.31 16 13 C 0.15 6.55 6.26 38.12 0.24 6.79 16 14 N -0.64 -20.60 5.28 -306.27 -1.62 -22.21 16 15 C 0.55 19.01 7.51 86.78 0.65 19.66 16 16 O -0.56 -25.44 14.13 -3.93 -0.06 -25.50 16 17 C -0.16 -3.98 5.89 -20.00 -0.12 -4.10 16 18 C 0.14 2.51 10.71 85.04 0.91 3.42 16 19 N -0.46 -8.05 10.34 -194.59 -2.01 -10.06 16 20 C 0.11 1.69 11.16 84.75 0.95 2.64 16 21 C 0.04 0.82 7.33 22.43 0.16 0.98 16 22 F -0.13 -2.44 17.28 44.97 0.78 -1.66 16 23 C -0.06 -1.49 9.70 22.78 0.22 -1.27 16 24 C -0.23 -12.26 8.39 22.86 0.19 -12.07 16 25 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 26 H 0.11 5.85 6.18 -2.91 -0.02 5.83 16 27 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 29 H 0.42 8.96 6.90 -92.71 -0.64 8.32 16 30 H 0.20 2.26 6.43 -2.91 -0.02 2.24 16 31 H 0.21 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.15 3.92 7.74 -2.91 -0.02 3.90 16 33 H 0.09 4.77 6.44 -2.91 -0.02 4.75 16 Total: -1.00 -71.50 298.24 4.29 -67.21 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.54 Total: 23.46 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 4.39 Total: -28.68 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -3.39 Total: -77.06 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.06 Total: -25.50 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Total: -71.50 4.29 -67.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313469375.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.510 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds