Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86803 * 119.99668 * 2 1 4 4 H 1.48505 * 109.46888 * 269.99730 * 3 2 1 5 5 H 1.48504 * 109.47214 * 29.99717 * 3 2 1 6 6 H 1.48494 * 109.47215 * 149.99803 * 3 2 1 7 7 C 1.40220 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00074 * 191.08248 * 7 2 1 9 9 C 1.41088 * 120.00254 * 11.08267 * 7 2 1 10 10 C 1.40897 * 120.10534 * 208.90216 * 9 7 2 11 11 C 1.36310 * 119.89572 * 180.02562 * 10 9 7 12 12 C 1.40037 * 120.10259 * 0.27351 * 11 10 9 13 13 C 1.47596 * 119.89373 * 179.72341 * 12 11 10 14 14 O 1.21600 * 120.00155 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99429 * 179.97438 * 13 12 11 16 16 C 1.39833 * 119.99838 * 185.11559 * 15 13 12 17 17 C 1.38939 * 120.48076 * 212.77955 * 16 15 13 18 18 N 1.31782 * 120.70967 * 179.75246 * 17 16 15 19 19 C 1.31868 * 121.82392 * 0.54055 * 18 17 16 20 20 C 1.38482 * 120.89189 * 359.72334 * 19 18 17 21 21 F 1.35100 * 120.40413 * 179.97438 * 20 19 18 22 22 C 1.38735 * 119.18994 * 359.97438 * 20 19 18 23 23 C 1.40037 * 120.20328 * 359.44570 * 12 11 10 24 24 C 1.36301 * 120.10964 * 0.55418 * 23 12 11 25 25 H 0.97003 * 120.00601 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.05210 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.94531 * 179.97438 * 11 10 9 28 28 H 0.97004 * 120.00630 * 5.12377 * 15 13 12 29 29 H 1.07991 * 119.64366 * 0.02562 * 17 16 15 30 30 H 1.07999 * 119.55405 * 179.74832 * 19 18 17 31 31 H 1.07998 * 120.83041 * 180.02562 * 22 20 19 32 32 H 1.08007 * 119.94562 * 180.28001 * 23 12 11 33 33 H 1.08001 * 120.05460 * 179.69937 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4377 2.6528 0.7000 6 1 3.5378 1.4404 0.7000 7 6 2.0076 -1.2143 0.0005 8 1 3.0725 -1.2229 0.1803 9 6 1.3220 -2.4249 -0.2338 10 6 1.7961 -3.6261 0.3298 11 6 1.1307 -4.7934 0.1002 12 6 -0.0191 -4.8009 -0.6991 13 6 -0.7326 -6.0684 -0.9497 14 8 -0.3220 -7.1039 -0.4620 15 7 -1.8397 -6.0779 -1.7182 16 6 -2.5762 -7.2570 -1.8688 17 6 -3.2368 -7.5280 -3.0607 18 7 -3.9281 -8.6400 -3.2092 19 6 -4.0311 -9.5293 -2.2410 20 6 -3.4057 -9.3287 -1.0218 21 9 -3.5182 -10.2461 -0.0365 22 6 -2.6623 -8.1740 -0.8246 23 6 -0.4974 -3.6086 -1.2566 24 6 0.1613 -2.4365 -1.0325 25 1 -0.4851 0.8400 -0.0004 26 1 2.6858 -3.6221 0.9421 27 1 1.4936 -5.7147 0.5315 28 1 -2.1256 -5.2669 -2.1670 29 1 -3.1795 -6.8217 -3.8756 30 1 -4.6106 -10.4265 -2.4011 31 1 -2.1633 -7.9908 0.1155 32 1 -1.3872 -3.6185 -1.8687 33 1 -0.2056 -1.5183 -1.4669 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335002856.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -29.727715 kcal Electronic energy + Delta-G solvation = -20657.459710 eV Core-core repulsion = 17176.062879 eV Total energy + Delta-G solvation = -3481.396832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.99924 -40.63629 -39.00739 -37.33869 -34.84459 -34.01834 -31.86462 -30.76373 -29.64718 -29.47724 -26.17878 -24.19410 -23.37917 -21.95463 -21.10116 -19.98588 -18.34378 -17.65325 -17.40716 -17.04575 -16.44900 -15.85932 -15.74350 -15.46900 -14.42618 -14.31627 -14.14791 -13.93958 -13.46440 -13.34469 -13.15234 -12.89972 -12.41085 -12.22694 -12.04645 -11.63602 -11.39440 -11.07895 -10.91305 -10.73189 -10.20841 -10.00422 -9.70280 -9.56888 -9.47378 -9.11539 -8.31709 -7.89772 -7.67396 -7.12658 -4.77239 0.81846 1.06042 2.00194 2.82761 2.86874 2.88786 2.91488 3.20125 3.44625 3.65201 3.73233 4.03170 4.39172 4.42782 4.69462 4.82868 4.94418 5.37643 5.41186 5.61170 5.81451 5.86386 6.01513 6.13720 6.30865 6.61810 6.68739 6.74494 6.85963 6.95404 7.27046 7.39952 7.55977 7.70564 7.71425 7.81410 7.91886 8.25008 8.48003 8.57749 8.62940 9.78503 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.039151 B = 0.003145 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.005158 B = 8899.562013 C = 9310.148783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.437 4.437 8 H 0.086 0.914 9 C 0.131 3.869 10 C -0.234 4.234 11 C -0.019 4.019 12 C -0.287 4.287 13 C 0.570 3.430 14 O -0.552 6.552 15 N -0.676 5.676 16 C 0.152 3.848 17 C 0.053 3.947 18 N -0.437 5.437 19 C 0.038 3.962 20 C 0.072 3.928 21 F -0.130 7.130 22 C -0.124 4.124 23 C -0.064 4.064 24 C -0.170 4.170 25 H 0.288 0.712 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.415 0.585 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.090 0.910 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.898 -5.797 -3.935 9.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.127 3.873 10 C -0.254 4.254 11 C -0.038 4.038 12 C -0.292 4.292 13 C 0.368 3.632 14 O -0.432 6.432 15 N -0.322 5.322 16 C 0.053 3.947 17 C -0.108 4.108 18 N -0.144 5.144 19 C -0.121 4.121 20 C 0.050 3.950 21 F -0.109 7.109 22 C -0.153 4.153 23 C -0.083 4.083 24 C -0.189 4.189 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.253 0.747 29 H 0.182 0.818 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.108 0.892 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.182 -6.464 -4.297 9.923 hybrid contribution 0.543 1.212 0.861 1.583 sum -5.639 -5.252 -3.436 8.437 Atomic orbital electron populations 1.69696 1.07832 1.30188 1.32109 1.26119 0.94961 1.01975 0.91935 0.86122 0.80457 0.79541 0.79681 1.18888 1.19899 1.18241 1.19913 0.96578 0.90489 1.39530 0.89550 1.17848 0.90740 0.92225 0.86462 1.20779 1.03825 0.93176 1.07595 1.20370 0.92562 0.97060 0.93807 1.18720 1.03722 0.90678 1.16067 1.18853 0.78176 0.89999 0.76144 1.90675 1.66897 1.34433 1.51232 1.43671 1.26634 1.10455 1.51398 1.18691 0.93600 0.89076 0.93342 1.22680 0.97419 0.95611 0.95042 1.67629 1.15102 1.01464 1.30236 1.22709 1.01042 1.00114 0.88269 1.18647 1.00236 0.88673 0.87474 1.91515 1.94443 1.64436 1.60477 1.21726 0.98992 0.93478 1.01108 1.20480 0.97313 0.92757 0.97728 1.21040 0.99017 0.96721 1.02163 0.90086 0.88089 0.87895 0.74687 0.81815 0.81778 0.82306 0.89166 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.66 10.85 55.56 0.60 -17.05 16 2 C 0.07 1.57 5.24 -17.31 -0.09 1.48 16 3 Si 0.92 16.51 29.58 -169.99 -5.03 11.48 16 4 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 6 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 7 C -0.44 -10.31 9.05 -37.76 -0.34 -10.65 16 8 H 0.09 1.94 7.87 -52.48 -0.41 1.53 16 9 C 0.13 3.13 5.55 -106.80 -0.59 2.54 16 10 C -0.23 -5.32 9.73 -39.27 -0.38 -5.70 16 11 C -0.02 -0.41 9.52 -39.60 -0.38 -0.79 16 12 C -0.29 -6.03 5.89 -104.73 -0.62 -6.65 16 13 C 0.57 11.08 7.53 -12.44 -0.09 10.99 16 14 O -0.55 -12.00 14.02 5.28 0.07 -11.93 16 15 N -0.68 -10.38 5.29 -10.69 -0.06 -10.44 16 16 C 0.15 2.23 6.30 -83.58 -0.53 1.70 16 17 C 0.05 0.67 11.12 -17.31 -0.19 0.48 16 18 N -0.44 -5.70 10.35 -13.02 -0.13 -5.83 16 19 C 0.04 0.46 11.17 -17.45 -0.19 0.27 16 20 C 0.07 0.99 7.34 -39.31 -0.29 0.70 16 21 F -0.13 -1.78 17.28 2.25 0.04 -1.74 16 22 C -0.12 -1.92 8.75 -39.03 -0.34 -2.26 16 23 C -0.06 -1.29 9.47 -39.61 -0.37 -1.66 16 24 C -0.17 -3.89 8.60 -39.27 -0.34 -4.22 16 25 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 26 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 27 H 0.10 2.18 7.63 -52.48 -0.40 1.78 16 28 H 0.41 5.28 6.84 -40.82 -0.28 5.00 16 29 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.16 2.73 6.49 -52.49 -0.34 2.39 16 32 H 0.09 1.49 6.39 -52.48 -0.34 1.15 16 33 H 0.12 2.87 6.23 -52.49 -0.33 2.54 16 LS Contribution 297.87 15.07 4.49 4.49 Total: -1.00 -26.58 297.87 -7.26 -33.84 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -2.50 Total: 10.96 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -4.75 Total: -13.78 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.41 Total: -33.32 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.58 -7.26 -33.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335002856.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.115 kcal (2) G-P(sol) polarization free energy of solvation -26.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds